pabpc1a (LOC106593394)


Basic Information

Item Value
gene id pabpc1a
gene name LOC106593394
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12924472 ~ 12934534 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938238.1
GACCACATGTTCATTCCCTTCTGCGTAGCTACGCTAGAGTGTGTTCCGGAGCCTCGGCACACATTTTATtatcaaaaaaaaaacacaaaaaaaatatataaaataaataaacacaaggGAAGATTATTTTTTTgtaagaaaaagaaaaactcggTGAAGCAGGACTAACAAGTAACCCGTCGAAAATAGGACGAGATTTCGGAAGAGAAGGTCATTTTGTTCCATTTGATAACATTGTTGGAAAGGCGTTGGGTGATTTCATATCAATAGTTAACCGagacattttattattattttttattagctagaAGCTAACGTAGCAGGGTCTTTTTTTGTTGTCGATATCGCATCTGTTATTATTGTAACGTTAACTAGTCGTAGTTTAAGACATATTGTAGCTACTAGTAACTTTTGTTTTCTCCAGAAGGTAACGTTAGCTCGCTAGACACCAGGTAGCAGAATTAGCCAGCCGGCCCGCATTGCTTTTTTTGCGGCCTAAGTGCGAAGTAGTTAAcgtccaaaacattttttttattttattttttagcaaGCAACAAATCTTCGGTGTCACAAGACACCATTTCACAGACGTTAACCTGACAACGTAACGTGTTTATTACCCTCCCGTATTATTTAAAAAACCTAAAACCCCGATCCGGTAGACATGAATCCAAGCGCCCCCAGTTACCCGATGGCCTCCCTTTACGTGGGCGACCTGCACCAGGATATCACCGAGGCCATGCTGTACGAGAAGTTCAGCCCCGCCGGGCCTATCCTCTCCATTCGAGTCTGCAGGGACATGATCACTCGTCGATCCCTCGGATATGCCTACGTTAACTTCCAACAACCAGCCGATGCTGAACGTGCCCTGGACACCATGAACTTCGACGTCATCAAAGGGAGACCCCTGCGTATCATGTGGTCTCAGCGTGACCCATCCCTGAGGAAGAGTGGGGTGGGCAACATCTTCATCAAGAACCTGGACAAGTCCATTGACAACAAGGCCCTCTATGACACCTTCTCGGCGTTCGGAAACATCCTCTCTTGCAAGGTGGTTTGTGATGAGAATGGCTCAAAGGGATATGGCTTTGTGCATTTTGAGACCCAGGAGGCGGCTGAAAGAGCCATTGAGAAAATGAACGGCATGCTGCTCAATGACAGAAAAGTGTTCGTCGGACGCTTCAAATCCCGTAAAGAGCGCGAGGCTGAGCTCGGAGCCAGAGCCAGAGAGTTCACCAACGTGTACATCAAGAACTTCGGAGAGGACATGGACGACGAGAAGCTGAGGGAGCTGTTCGGGAAATATGTTCCAGGACCGGCCCTGAGCATCAGGGTGATGACGGACGACAGCGGGAAGTCCCGGGGGTTCGGCTTCGTCAGCTTTGAGAGGCACGAGGATGCTCAGAGGGCTGTAGACGAGATGAACGGGAAGGATTTTAACGGCCGTCAGGTCTACGTGGGCCGAGCCCAGAAGAAGGGAGAGCGCCAGACGGAGTTGAAACGCAAGTTCGAACAGATGAAGCAGGACCGCATGACCCGCTACCAGGGGGTCAACCTGTACGTCAAGAATCTGGACGATGGCCTCGACGACGAGCGTCTGAGGAAGGAGTTCTCTCCTTTCGGTACCATCACCAGCGCCAAGGTGATGATGGAAGGTGGTCGCAGCAAGGGCTTCGGCTTCGTGTGCTTCTCCTCCCCGGAGGAGGCCACCAAGGCCGTGACGGAGATGAACGGGCGCATCGTGGCCACCAAGCCGCTGTACGTGGCGCTGGCCCAGAGGAAAGAGGAGCGCCAGGCTCACCTCACCAACCAGTACATGCAGAGGATGGCCACCGTCCGGCCCGTACCCAACCCAGTCCTCAACCCCTACCAGCCTGCCCCTCCCTCCGGGTACTTCATGGCTGCCATCCCCCAGACTCAGAACCGCGCTGCCTACTACTCCACCAATCAGCTGGCTCAGCTGAGACCAGGCCCACGCTGGGCCACCCAGGGTGTCAGACCACAACACTTCCAGAACATGCCCAACGCCATGCGTCCGTCCGCCCCCAGGCCGCAGGCCTTCGGTGCCATGAGGCCCTCGTCCTCCCAGGTGCCACGTATGATGGCCGGCCAGAGAATGGccaCCCAGGCCCTGGGCCAGCGTCCTGCCGGTACGGCGGCTGCTGCAGCCCCGGTGAGGATGCCTCAGTACAAGTATGCAGCGGGCGTGAGGAACCCCCAGCAGCACATGGCCAGCCAGCCCCAGGTGCCCATGCAGCAGCCGGCTGTCCACGTCCAGGGACAGGAGCCTCTGACGGCCTCCATGCTGGCGGCTGCTCCTCCTCAGGAACAGAAGCAGATGTTGGGCGAGCGTCTGTTCCCTCTCATCCAAAACATGCACCCCAGCCTGGCTGGAAAGATCACCGGCATGCTGTTGGAGATAGACAACTCCGAGTTGCTCCACATGCTGGAGTCTCCCGAGTCTCTCCGCTCCAAGGTGGACGAGGCTGTTGCTGTGCTGCAGGCTCACCAGGCCAAGGAGTCCGCCCAGAAGCCCACCAACCCCGCCGGAGTCCCCAGCTAAGAACCGaGACGGTAATCCTTTTAACTTTGCTTCACCGAAGAAAATGGTAGAAAAAATTTAAACATGGAAAAAAACCCTGAAAACTCTGAAAACATTGCAAAAAATGAATAAAGTTATTTCTTTACAAAAAATGAATACAACATCATCTGCCGGGTCTAGAGAAGATTTAAGCTAGTCCTTGTTATTAAAAGTTACAAAAgtggacaaaaacaacaacaaaaaaatagcaAAAACGATCTTAATTATTGAAAAATGTTTGACAAAATGTGACCATAAAATAAAAGACATTCCATTGTTTTATTTCCTCTTCCAGTATCAGTCCTCAGAATATCAGCTGTTGTGTTCAGAGATCAGATAGCTGAGTGCTTTGTCATTTGGATTGAAAACTGCTAAATAAAGATATCAAACACTTTAAAA
>XM_036938245.1
GACCACATGTTCATTCCCTTCTGCGTAGCTACGCTAGAGTGTGTTCCGGAGCCTCGGCACACATTTTATtatcaaaaaaaaaacacaaaaaaaatatataaaataaataaacacaaggGAAGATTATTTTTTTgtaagaaaaagaaaaactcggTGAAGCAGGACTAACAAGTAACCCGTCGAAAATAGGACGAGATTTCGGAAGAGAAGGTCATTTTGTTCCATTTGATAACATTGTTGGAAAGGCGTTGGGTGATTTCATATCAATAGTTAACCGagacattttattattattttttattagctagaAGCTAACGTAGCAGGGTCTTTTTTTGTTGTCGATATCGCATCTGTTATTATTGTAACGTTAACTAGTCGTAGTTTAAGACATATTGTAGCTACTAGTAACTTTTGTTTTCTCCAGAAGGTAACGTTAGCTCGCTAGACACCAGGTAGCAGAATTAGCCAGCCGGCCCGCATTGCTTTTTTTGCGGCCTAAGTGCGAAGTAGTTAAcgtccaaaacattttttttattttattttttagcaaGCAACAAATCTTCGGTGTCACAAGACACCATTTCACAGACGTTAACCTGACAACGTAACGTGTTTATTACCCTCCCGTATTATTTAAAAAACCTAAAACCCCGATCCGGTAGACATGAATCCAAGCGCCCCCAGTTACCCGATGGCCTCCCTTTACGTGGGCGACCTGCACCAGGATATCACCGAGGCCATGCTGTACGAGAAGTTCAGCCCCGCCGGGCCTATCCTCTCCATTCGAGTCTGCAGGGACATGATCACTCGTCGATCCCTCGGATATGCCTACGTTAACTTCCAACAACCAGCCGATGCTGAACGTGCCCTGGACACCATGAACTTCGACGTCATCAAAGGGAGACCCCTGCGTATCATGTGGTCTCAGCGTGACCCATCCCTGAGGAAGAGTGGGGTGGGCAACATCTTCATCAAGAACCTGGACAAGTCCATTGACAACAAGGCCCTCTATGACACCTTCTCGGCGTTCGGAAACATCCTCTCTTGCAAGGTGGTTTGTGATGAGAATGGCTCAAAGGGATATGGCTTTGTGCATTTTGAGACCCAGGAGGCGGCTGAAAGAGCCATTGAGAAAATGAACGGCATGCTGCTCAATGACAGAAAAGTGTTCGTCGGACGCTTCAAATCCCGTAAAGAGCGCGAGGCTGAGCTCGGAGCCAGAGCCAGAGAGTTCACCAACGTGTACATCAAGAACTTCGGAGAGGACATGGACGACGAGAAGCTGAGGGAGCTGTTCGGGAAATATGGACCGGCCCTGAGCATCAGGGTGATGACGGACGACAGCGGGAAGTCCCGGGGGTTCGGCTTCGTCAGCTTTGAGAGGCACGAGGATGCTCAGAGGGCTGTAGACGAGATGAACGGGAAGGATTTTAACGGCCGTCAGGTCTACGTGGGCCGAGCCCAGAAGAAGGGAGAGCGCCAGACGGAGTTGAAACGCAAGTTCGAACAGATGAAGCAGGACCGCATGACCCGCTACCAGGGGGTCAACCTGTACGTCAAGAATCTGGACGATGGCCTCGACGACGAGCGTCTGAGGAAGGAGTTCTCTCCTTTCGGTACCATCACCAGCGCCAAGGTGATGATGGAAGGTGGTCGCAGCAAGGGCTTCGGCTTCGTGTGCTTCTCCTCCCCGGAGGAGGCCACCAAGGCCGTGACGGAGATGAACGGGCGCATCGTGGCCACCAAGCCGCTGTACGTGGCGCTGGCCCAGAGGAAAGAGGAGCGCCAGGCTCACCTCACCAACCAGTACATGCAGAGGATGGCCACCGTCCGGCCCGTACCCAACCCAGTCCTCAACCCCTACCAGCCTGCCCCTCCCTCCGGGTACTTCATGGCTGCCATCCCCCAGACTCAGAACCGCGCTGCCTACTACTCCACCAATCAGCTGGCTCAGCTGAGACCAGGCCCACGCTGGGCCACCCAGGGTGTCAGACCACAACACTTCCAGAACATGCCCAACGCCATGCGTCCGTCCGCCCCCAGGCCGCAGGCCTTCGGTGCCATGAGGCCCTCGTCCTCCCAGGTGCCACGTATGATGGCCGGCCAGAGAATGGccaCCCAGGCCCTGGGCCAGCGTCCTGCCGGTACGGCGGCTGCTGCAGCCCCGGTGAGGATGCCTCAGTACAAGTATGCAGCGGGCGTGAGGAACCCCCAGCAGCACATGGCCAGCCAGCCCCAGGTGCCCATGCAGCAGCCGGCTGTCCACGTCCAGGGACAGGAGCCTCTGACGGCCTCCATGCTGGCGGCTGCTCCTCCTCAGGAACAGAAGCAGATGTTGGGCGAGCGTCTGTTCCCTCTCATCCAAAACATGCACCCCAGCCTGGCTGGAAAGATCACCGGCATGCTGTTGGAGATAGACAACTCCGAGTTGCTCCACATGCTGGAGTCTCCCGAGTCTCTCCGCTCCAAGGTGGACGAGGCTGTTGCTGTGCTGCAGGCTCACCAGGCCAAGGAGTCCGCCCAGAAGCCCACCAACCCCGCCGGAGTCCCCAGCTAAGAACCGaGACGGTAATCCTTTTAACTTTGCTTCACCGAAGAAAATGGTAGAAAAAATTTAAACATGGAAAAAAACCCTGAAAACTCTGAAAACATTGCAAAAAATGAATAAAGTTATTTCTTTACAAAAAATGAATACAACATCATCTGCCGGGTCTAGAGAAGATTTAAGCTAGTCCTTGTTATTAAAAGTTACAAAAgtggacaaaaacaacaacaaaaaaatagcaAAAACGATCTTAATTATTGAAAAATGTTTGACAAAATGTGACCATAAAATAAAAGACATTCCATTGTTTTATTTCCTCTTCCAGTATCAGTCCTCAGAATATCAGCTGTTGTGTTCAGAGATCAGATAGCTGAGTGCTTTGTCATTTGGATTGAAAACTGCTAAATAAAGATATCAAACACTTTAAAA

Function

NR:

description
polyadenylate-binding protein 1

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13126 PABPC; polyadenylate-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938238.1 False 2980 mRNA 0.51 11 12924472 12934534
XM_036938245.1 True 2974 mRNA 0.51 11 12924472 12934534

Neighbor

gene id symbol gene type direction distance location
LOC110525147 LOC106570794 coding downstream 34076 12813650 ~ 12890396 (-)
LOC118937723 LOC106561136 coding downstream 208862 12683093 ~ 12715610 (-)
LOC118937724 NA coding downstream 240697 12683058 ~ 12683775 (-)
pop1 LOC106561139 coding downstream 250598 12639702 ~ 12673874 (-)
LOC118944197 NA coding downstream 306778 12617506 ~ 12617694 (-)
LOC110507522 LOC106606066 coding upstream 128556 13063090 ~ 13083743 (-)
LOC110507534 LOC106606051 coding upstream 151635 13086169 ~ 13094428 (-)
LOC118937728 NA coding upstream 163011 13097545 ~ 13127127 (-)
abhd5a LOC106573494 coding upstream 241631 13176165 ~ 13189012 (-)
LOC118937744 NA coding upstream 312422 13246956 ~ 13250244 (-)
G114497 NA non-coding downstream 5471 12918342 ~ 12919001 (-)
G114486 NA non-coding downstream 62285 12861467 ~ 12862187 (-)
G114478 NA non-coding downstream 101564 12818120 ~ 12822908 (-)
G114479 NA non-coding downstream 103390 12820171 ~ 12821082 (-)
G114502 NA non-coding upstream 3009 12937543 ~ 12937830 (-)
G114506 NA non-coding upstream 8951 12943485 ~ 12961942 (-)
G114510 NA non-coding upstream 53411 12987945 ~ 12988251 (-)
G114511 NA non-coding upstream 53886 12988420 ~ 12988629 (-)
G114513 NA non-coding upstream 57764 12992298 ~ 12992590 (-)
G114442 NA other downstream 185315 12735314 ~ 12739157 (-)
G114424 NA other downstream 215157 12707827 ~ 12709315 (-)
G114402 NA other downstream 310792 12610669 ~ 12613680 (-)
G114390 NA other downstream 339332 12584027 ~ 12585140 (-)
LOC110513475 LOC106592216 other downstream 1265804 11471939 ~ 12290710 (-)
LOC110513400 snrk other upstream 361299 13250306 ~ 13324680 (-)
G114812 NA other upstream 396214 13330748 ~ 13332506 (-)
LOC110534058 LOC106593045 other upstream 559914 13494448 ~ 13500298 (-)
G114928 LOC106574568 other upstream 640001 13574535 ~ 13582606 (-)

Expression


Co-expression Network