LOC118937728


Basic Information

Item Value
gene id LOC118937728
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13097545 ~ 13127127 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938313.1
CCAGGCTGGAGAGAGTGATCTGATTCTTCTGAAGCGCatgtcagagaggaggaggaggagggagggaatgaaccaggaagagagagagagagagagagagaaggcagccTCCGGTTGACAGTCCATGGAGGTCTGCAGGATCTCCAGGACCAGGAACCATCCCTGGCTGCTGCGCCTGGTGTGTGTTTCGCCTGCTGCTATCACAAGGGGCTGCAGGGCTTTCATCACCACTGAATGGTGTgctgtcctgatgtctctctcAAAGCCAGGAGGACTGACGTCAGAGACTTTCTCTGGATCAGCCCCTGAGAGCTGTAGGATCCACCCAGGAGGATGCAGGGCCTCAGGAGGAACAGCTCTAGCCAGCTCTGACTTCTGGTGGGGCGGGACAGCTGGTGTTGTGAATCAGGCCGCTATAGTGCCAGACACGGCTTCTTCCCAACACCAGGGTCACACCCCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACAGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACAGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAGCAGATCACAGCAGGACAGATCAAAATGCATGCCGAGACTAGTGGAGGATGTGTCTTTCAAAAACAGACTAGTCGAAGTTCATTAAAATGGGGCATAAGAGGAGCATTTGAGCATGGGCCCAAAGCACAACCACCATTGTTTAATTCTCAATTGTTATTAAAGTAGAGTTGTATTGTATTGACTTGCCCTATGACAGCTTCTGTGTGTCTGCACACTAGGACTAGGATTCAACATCAGTGAACTATCAGAGCGTAGTACAACTAGAGAGAGGACAGTGCTGATGGGAATAGCATGAAATGAATAATCAATCAAAATGAAATGTGTTCCGGTTTATGTAAAAGCATGACAAATGAAAGGCTGGGTGTATTCCTTTGTCTGGGATTAAATACAAAATGGATTTTGATGTTAGTCTCAGTCTTAGTATCAGTACGCTTTGTTGGCATCCCTCGGTGCTgcttttatttcactttatattaTATACTTTTATTAAACTCATCAAAGGACTCTTTATTTGTTATTCGTTACTTAACAAATTGTATGTTTTCATTGTGTGGTGGTAGTTTGTGAGTGAAAGTGTTTTTGCATCATTATTCCAATAATAAAGTAGGATACATGTGAACAACTACAGTTATGTATCTTGTC
>XM_036938316.1
cagagagagacagagatagagagagagccagagcaagctgtgtgtgtgggagaacAATGATGGGTTCTCTCTCGTCTGCCTGTTCATATAGTGTGTGTCTACTCTCATGTTCTGGTAAAGGAAGGCTGCAGGGCTTTCATCACCACTGAATGGTGTgctgtcctgatgtctctctcAAAGCCAGGAGGACTGACGTCAGAGACTTTCTCTGGATCAGCCCCTGAGAGCTGTAGGATCCACCCAGGAGGATGCAGGGCCTCAGGAGGAACAGCTCTAGCCAGCTCTGACTTCTGGTGGGGCGGGACAGCTGGTGTTGTGAATCAGGCCGCTATAGTGCCAGACACGGCTTCTTCCCAACACCAGGGTCACACCCCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACAGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACAGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAGCAGATCACAGCAGGACAGATCAAAATGCATGCCGAGACTAGTGGAGGATGTGTCTTTCAAAAACAGACTAGTCGAAGTTCATTAAAATGGGGCATAAGAGGAGCATTTGAGCATGGGCCCAAAGCACAACCACCATTGTTTAATTCTCAATTGTTATTAAAGTAGAGTTGTATTGTATTGACTTGCCCTATGACAGCTTCTGTGTGTCTGCACACTAGGACTAGGATTCAACATCAGTGAACTATCAGAGCGTAGTACAACTAGAGAGAGGACAGTGCTGATGGGAATAGCATGAAATGAATAATCAATCAAAATGAAATGTGTTCCGGTTTATGTAAAAGCATGACAAATGAAAGGCTGGGTGTATTCCTTTGTCTGGGATTAAATACAAAATGGATTTTGATGTTAGTCTCAGTCTTAGTATCAGTACGCTTTGTTGGCATCCCTCGGTGCTgcttttatttcactttatattaTATACTTTTATTAAACTCATCAAAGGACTCTTTATTTGTTATTCGTTACTTAACAAATTGTATGTTTTCATTGTGTGGTGGTAGTTTGTGAGTGAAAGTGTTTTTGCATCATTATTCCAATAATAAAGTAGGATACATGTGAACAACTACAGTTATGTATCTTGT
>XM_036938308.1
AGGCTGGAGAGAGTGATCTGATTCTTCTGAAGCGCatgtcagagaggaggaggaggagggagggaatgaaccaggaagagagagagagagagagagagaaggcagccTCCGGTTGACAGTCCATGGAGGTCTGCAGGATCTCCAGGACCAGGAACCATCCCTGGCTGCTGCGCCTGGTGTGTGTTTCGCCTGCTGCTATCACAAGGGGCTGCAGGGCTTTCATCACCACTGAATGGTGTgctgtcctgatgtctctctcAAAGCCAGGAGGACTGACGTCAGAGACTTTCTCTGGATCAGCCCCTGAGAGCTGTAGGATCCACCCAGGAGGATGCAGGGCCTCAGGAGGAACAGCTCTAGCCAGCTCTGACTTCTGGTGGGGCGGGACAGCTGGTGTTGTGAATCAGGCCGCTATAGTGCCAGACACGGCTTCTTCCCAACACCAGGGTCACACCCCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACAGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACAGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAACAGCACTGTCCGCAGCACCGAAGCCCCGGAGCCCAGCCCTCTCCCTCACCGGCAGCAAGGCACAGCAGCAGATCACAGCAGGACAGATCAAAATGCATGCCGAGACTAGTGGAGGATGTGTCTTTCAAAAACAGACTAGTCGAAGTTCATTAAAATGGGGCATAAGAGGAGCATTTGAGCATGGGCCCAAAGCACAACCACCATTGTTTAATTCTCAATTGTTATTAAAGTAGAGTTGTATTGTATTGACTTGCCCTATGACAGCTTCTGTGTGTCTGCACACTAGGACTAGGATTCAACATCAGTGAACTATCAGAGCGTAGTACAACTAGAGAGAGGACAGTGCTGATGGGAATAGCATGAAATGAATAATCAATCAAAATGAAATGTGTTCCGGTTTATGTAAAAGCATGACAAATGAAAGGCTGGGTGTATTCCTTTGTCTGGGATTAAATACAAAATGGATTTTGATGTTAGTCTCAGTCTTAGTATCAGTACGCTTTGTTGGCATCCCTCGGTGCTgcttttatttcactttatattaTATACTTTTATTAAACTCATCAAAGGACTCTTTATTTGTTATTCGTTACTTAACAAATTGTATGTTTTCATTGTGTGGTGGTAGTTTGTGAGTGAAAGTGTTTTTGCATCATTATTCCAATAATAAAGTAGGATACATGTGAACAACTACAGTTATGTATCTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938313.1 False 1641 mRNA 0.53 4 13097545 13127127
XM_036938316.1 False 1623 mRNA 0.53 3 13097546 13120479
XM_036938308.1 True 1706 mRNA 0.54 3 13097546 13127125

Neighbor

gene id symbol gene type direction distance location
LOC110507534 LOC106606051 coding downstream 3117 13086169 ~ 13094428 (-)
LOC110507522 LOC106606066 coding downstream 13802 13063090 ~ 13083743 (-)
pabpc1a LOC106593394 coding downstream 163011 12924472 ~ 12934534 (-)
LOC118944179 NA coding downstream 172106 12925357 ~ 12925439 (-)
LOC110525147 LOC106570794 coding downstream 207149 12813650 ~ 12890396 (-)
abhd5a LOC106573494 coding upstream 49038 13176165 ~ 13189012 (-)
LOC118937744 NA coding upstream 119829 13246956 ~ 13250244 (-)
LOC110513400 snrk coding upstream 123179 13250306 ~ 13324680 (-)
LOC118937736 NA coding upstream 189632 13316759 ~ 13319153 (-)
LOC110507671 LOC106606048 coding upstream 212438 13339565 ~ 13353635 (-)
G114514 NA non-coding downstream 103298 12993931 ~ 12994247 (-)
G114513 NA non-coding downstream 104955 12992298 ~ 12992590 (-)
G114511 NA non-coding downstream 108916 12988420 ~ 12988629 (-)
G114510 NA non-coding downstream 109294 12987945 ~ 12988251 (-)
G114506 NA non-coding downstream 135603 12943485 ~ 12961942 (-)
G114739 NA non-coding upstream 13820 13140947 ~ 13141231 (-)
G114741 NA non-coding upstream 24065 13151192 ~ 13153857 (-)
G114743 NA non-coding upstream 31464 13158591 ~ 13159374 (-)
G114747 NA non-coding upstream 40614 13167741 ~ 13168196 (-)
G114759 NA non-coding upstream 73693 13200820 ~ 13201048 (-)
G114442 NA other downstream 358388 12735314 ~ 12739157 (-)
G114424 NA other downstream 388230 12707827 ~ 12709315 (-)
G114402 NA other downstream 483865 12610669 ~ 12613680 (-)
G114390 NA other downstream 512405 12584027 ~ 12585140 (-)
G114812 NA other upstream 203621 13330748 ~ 13332506 (-)
LOC110534058 LOC106593045 other upstream 367321 13494448 ~ 13500298 (-)
G114928 LOC106574568 other upstream 447408 13574535 ~ 13582606 (-)
LOC118937748 LOC106574107 other upstream 526775 13650726 ~ 13661631 (-)

Expression


Co-expression Network