LOC118937744


Basic Information

Item Value
gene id LOC118937744
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13246956 ~ 13250244 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035136.1
ATACCAGTCACCATACAGCTGGGAGAGATAGGAGGACAGGACAAAGATACCAGTCACCATACAGCTGGGAGAGATAGGAGGACAGGACAAAGATACCAGTCACCATACAgctgggagagatgggaggacaggacagagataccatacagctgggagagataggaggacaggacagagatatCATACAGCTGGGAGAGataggaggacaggacagagataccagtcaccatacagctgggagaggtagaggagagcagGACAGAGATACCAGTCACCATACAgctgggagaggtagaggaggacaggacagagatactagtCACCATACAGCTGGGAGATGTAGACGAGAGCAGGACAGAGATACCAGTCACCATACAGCTGGGAGAGGTAGAagagaacaggacagagataccagtcaccatacagctgggagaggtagaggaggacaggacagagataccagtcaccatacagctgggagaggtagaggaggacaggacagagataccagtcaccatacagctgggagaggtagaggaggacaggacaggacaggacagagataccagtcaccatacagctgggagaggtagaggagagcagGACAGAGATACCAGTCACCATACAgctgggagaggtagaggaggacaggacaggacaggacagagataccagtcaccatacagctgggagaggtagaggaggacaggacaggacaggacagagataccagtcaccatacagctgggagaggtagaggaggacaggacaggacaggacagagataccAGTCACCATACATGGTCCTGGAGGAAGGGAAGTAACCTGTAACCTTCATGTTGATATAAGCTCCTGCCATGCAGTCACATGGCAACGACCAACTGAGACAGAAACTTGGTAACCTCTAGAGATGTTTTAATTTGATTCATTGATTAACCTCATTTTACAGTGACCTACTGTCTGAAACGTTATTTCACTTGGATATTGCACACAGACAATCTGTTTTATGTTTGTATTTGTTAAGTGTATGGAATTAGAGAGGCATTTTAGATGGCGATACAGCTCACTGAATTGATTTTGAAGGCAACATGAATGATTGTTTCCAAACCCCTGTTTAACAAGTGCTACTTCAACACATCTGGTTTACTGTGGTGTTCCTGAGAGCCAGGAACCTGGAAAATAAGGCTTCAGCTTCCTCTTTATTCCCATCTCAATGCACTCGTCTTCAGGCACAATACATTCACCTATTTGGGTCAAATACTACTATACTTACTATTGTATAGTGAATACAGGTAGGAGCTGCAATCTTTTAGACACTATTCTAACAGAAAGGGTCATTCATCTGTAATTAGAACTACTGCTATTCATTTGCAAATTGGGCAAAACTCCTGAAATGATTCAAAGTTCATGACAACGTGTCAAACTGAATGTAAAGTACACTGGTAGACGAGTCGTGTGTTTTTCTCCTGTGCTGGGCCTCAAGGTAGCAGGCAAGCAGACCCACACAGATTTGATGTGGTCCCGTTCACATGTTGGTCATGGCCTTGGTTGACCACCTGCCATGTTGACGTAACATCTTAGAAAATGCATTTTAAGATCAATAGAAGAGCATGAGAATTGAAAAGAAAAACGTACTAATGAATTGGAAACTGCATTGGGTCTCTGTATTCCAGTGGACCCACACACGTCTTTGCTTTGTTAGACTGTTTCACTTTCTGTTACTGTAACTGACTGGTCTTCTGACTGGCCTGGCAGGCTGGTCTTCTGACTGGCCTGGCATTCTGGTCTTCTGACTGGCCTGGCAGGCTGGTCTTCTGACTGGCCTGGCAGGCGGGTCTTCTGACTGCTCTGGCAGGCGGGTCTTCTGACTGCTCTGGCAGGCGGGTCTTCTGACTGCTCTGGCAGGCTGGTCTTCTGACTGGCCTGGCAGGATGGTCTTCTGACTGGCCTGGCAGGCTGGTCTTCTGACTGGCCTGGCAGGCTGGTCTTCTGACTGGCCTGGCAGGCTGGTCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGTCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCtggttggtttgtttgtttttaaaggGTATATGTTGAGTATGTATATATGttttaaaaagttatatttttgaaCGATCTGCTGTTTTAAAAATTATTCTGTGTTGAATTGGGCCCGTGAGTCTTTCGTTGGGGACTAACATCGCAGTGTgtgtcacacacacccacaccttaCTGGACACTGCAGGGTGAAGGTTTTACATTCAGGATTAGTGGTTCAGTAGAGCACATGCACCTTTCAGGAGAGATTCCTGTCTGTAAGCTTTAAAGGACTGGGCTTagtaaagaaggaaagaaatgggGTTGTAGGGAGATGTGGGGATATATTTTAAGGGCATTGGCAATAAGCTACATGTTGCAGCTATCTGTAAATCAacatatttttgttttatatttcaACCCTGTACAGCCTTAGATTGAAAGGCACCTCGGACTAAAAACGAACAGAGAAAGATATCTTGAGTATTTTTTTTCTTTTGAAACAAAATGTCTGTAAATAGAGATGTAAATATGGTGCTCTATATTTAGAGTCGGCAGAGTGAACCTCTTGGTGCAGAGCTGTAAGTATAGCCTTATTAGGAATGGGTGTCTCCAAGAAAAGAACATGACTTTATTCATGTCGGCCAGTCTGACCGTTGTCTTACCCAGATGTAAACAGCTGAATGACATGTGCATGTGTTATATGTTTAACATTATCCATCCAAGGACATCGAGAGAGGAAGAACCATCCACTGAATGTTACTGGACCAAACCATGTACTGGCTAAATGAAAATATGAAATGGCAGAATTATTCAATGTATTATTCTGTAGTTGATACCTGTTGTGAACAGTTACATATAGCTATGGTGATATCCTAAATAAAATGTTGTGGGAAATGACGTCTTA
>TU131753
GACTGGCCTGGCAGGCTGGTCTTCTGACTGGCCTGGCAGGCTGGTCTTCTGACTGGCCTGGCAGGCTGGTCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCTGATCTTCTGACTGGTCTGGCAGGCTGATCTTCTGACTGGCCTGGCAGGCtggttggtttgtttgtttttaaaggGTATATGTTGAGTATGTATATATGttttaaaaagttatatttttgaaCGATCTGCTGTTTTAAAAATTATTCTGTGTTGAATTGGGCCCGTGAGTCTTTCGTTGGGGACTAACATCGCAGTGTgtgtcacacacacccacaccttaCTGGACACTGCAGGGTGAAGGTTTTACATTCAGGATTAGTGGTTCAGTAGAGCACATGCACCTTTCAGGAGAGATTCCTGTCTGTAAGCTTTAAAGGACTGGGCTTagtaaagaaggaaagaaatgggGTTGTAGGGAGATGTGGGGATATATTTTAAGGGCATTGGCAATAAGCTACATGTTGCAGCTATCTGTAAATCAacatatttttgttttatatttcaACCCTGTACAGCCTTAGATTGAAAGGCACCTCGGACTAAAAACGAACAGAGAAAGATATCTTGAGTATTTTTTTTCTTTTGAAACAAAATGTCTGTAAATAGAGATGTAAATATGGTGCTCTATATTTAGAGTCGGCAGAGTGAACCTCTTGGTGCAGAGCTGTAAGTATAGCCTTATTAGGAATGGGTGTCTCCAAGAAAAGAACATGACTTTATTCATGTCGGCCAGTCTGACCGTTGTCTTACCCAGATGTAAACAGCTGAATGACATGTGCATGTGTTATATGTTTAACATTATCCATCCAAGGACATCGAGAGAGGAAGAACCATCCACTGAATGTTACTGGACCAAACCATGTACTGGCTAAATGAAAATATGAAATGGCAGAATTATTCAATGTATTATTCTGTAGTTGATACCTGTTGTGAACAGTTACATATAGCTATGGTGATATCCTAAATAAAATGTTGTGGGAAATGACG

Function

NR:

description
PREDICTED: ABC transporter F family member 4-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035136.1 False 3140 mRNA 0.46 2 13246956 13250244
TU131753 True 1194 lncRNA 0.44 1 13246961 13248154

Neighbor

gene id symbol gene type direction distance location
abhd5a LOC106573494 coding downstream 57944 13176165 ~ 13189012 (-)
LOC118937728 NA coding downstream 119829 13097545 ~ 13127127 (-)
LOC110507534 LOC106606051 coding downstream 152528 13086169 ~ 13094428 (-)
LOC110507522 LOC106606066 coding downstream 163213 13063090 ~ 13083743 (-)
pabpc1a LOC106593394 coding downstream 312422 12924472 ~ 12934534 (-)
LOC110513400 snrk coding upstream 62 13250306 ~ 13324680 (-)
LOC118937736 NA coding upstream 66515 13316759 ~ 13319153 (-)
LOC110507671 LOC106606048 coding upstream 89321 13339565 ~ 13353635 (-)
LOC118937745 LOC106606096 coding upstream 155638 13304688 ~ 13453664 (-)
LOC110534058 LOC106593045 coding upstream 246355 13494448 ~ 13500298 (-)
G114780 NA non-coding downstream 5122 13238974 ~ 13241834 (-)
G114763 NA non-coding downstream 41249 13205490 ~ 13205707 (-)
G114762 NA non-coding downstream 42399 13204145 ~ 13204557 (-)
G114759 NA non-coding downstream 45908 13200820 ~ 13201048 (-)
G114747 NA non-coding downstream 78760 13167741 ~ 13168196 (-)
G114790 NA non-coding upstream 10461 13260705 ~ 13261386 (-)
G114814 NA non-coding upstream 79291 13329535 ~ 13330477 (-)
G114865 NA non-coding upstream 230272 13480516 ~ 13480903 (-)
G114442 NA other downstream 507799 12735314 ~ 12739157 (-)
G114424 NA other downstream 537641 12707827 ~ 12709315 (-)
G114402 NA other downstream 633276 12610669 ~ 12613680 (-)
G114390 NA other downstream 661816 12584027 ~ 12585140 (-)
G114812 NA other upstream 80504 13330748 ~ 13332506 (-)
G114928 LOC106574568 other upstream 324291 13574535 ~ 13582606 (-)
LOC118937748 LOC106574107 other upstream 403658 13650726 ~ 13661631 (-)
LOC118944179 NA coding downstream 321522 12925357 ~ 12925439 (-)

Expression


Co-expression Network