LOC110513073 (prune1)


Basic Information

Item Value
gene id LOC110513073
gene name prune1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13624633 ~ 13630579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938524.1
tagaAAAATCTTTGCTACAACCAGTCTCTTTGAAACTACCAGTTTGTAAACCAATATTTGATACTACACTACCCATAATACTACGTCCCGTCTTTGAACGTCACGTCAGCCCAAGACGAGTCACGCACGACTCTTGGGCATTAACATTTCAAACTTACAGTGCAGTCTTTTTATTCCTGAGACGTGCAGATACAGTTAACGTTACCTATATGCAACAAAGACAACTAGAACACTCTAATTTCAAACTGTCTTTACGTAGTGCATCCGATAACCATGgatatatttttaaaaagctgTCGCAATGAACTGAAGGGGAACGCAGAGGGCAGCCCAGGGTTCCATGTGGTCCTGGGGAATGAGGCCTGTGACCTGGACTCCATGGTGTCAGCTCTGGCCTACGCATACTTCCTGTCCAAGacACTTGATTCTGGGAAAGTTCCTCTTCCCGTTCTGAACATTCCCCGGCAAGAGTTCCCGCTGCGCACGGACAATGCCttcctgctgagagagagtggccTCTCCCAGGATGACCTGGTGTTCCGGGACGAGGTGGACCTGGGGAGTCTACACCGGGCTGGCCGGCTGGACCTCACACTGGTGGACCACAACGTGCTGCCCAGCTCTGACTGTGATCTAGAAgaggtggtgttggaggtgatCGACCATCACCTCCTGGAGAGGAagccctctccctcctgtcccgtTACCGTGGAGACGGTGGGCTCCTGCTCCACCCTGGTGGCAGAACGGATCATCCAGAAAGCCCCTGAAGTCCTCGACCAACAGGTGGCCCAGCTCTTATATGGCACCATAGTGTTAGACTGTGTGAACATGGCCCCAGAGGCAGGGAAAGTCACCCCTAAAGACAGCCAGTACGCTGGCCTCCTGGAGACGCACTTCCCCAACCTGCCACCAAGGGGCGTCCTCTTCCAGTCCTTGCAGAATGCTAAATTTGACGTGTCAGGTCTTACCACAGAACAGATGCTTCTGAAAGACATGAAGGTGGCATCGGAAGGAGATTTAAAACTGGCAGTCAGTGTGATATATATGACACTGGAGGCTTTTCTACAGAGACAAAGCTTACAGCAAGAGCTCTGTGAGTTCTGCCACAAGCACAGCTACAACCTGGTGGTGGCCATGACGATCTCCTTCAACGATAACAAGGAGCCCTTCAGGCAGCTGGCCGTCTACAGCTCCAGCACCCTCTACAGGGGGGAGATGAGCCAAGCCTTGGAGCAAGCCCGGAGCCCCAGTCTGAGCCTGAGTCCAATGAGCAGCCCTTACTCGGACATCAGGGCTTACCTCCAGGGCAACACGTTGGCCTCCAGGAAGAAGGTGCTGCCCATCATCAAGGACTTCCTGAGGGACAGGGAGCGAAGAGAGGTGCATTGTGGGACCCTAGAGGAGAGTTACGAGGTACCACAGCAACGAACGTGCACTGAGGACGCTGGGATAGAGGAGGACTCCTACTTCCCCCCCACCCCTATGAACAGTCTGGTGGAGGGCTGTCCCCTTGACAACGGACTGCCCAAGATCAGCGCTGAAGCTCTGACGGAGAAGTTCAGCAAGATGGCCAGCGAAGAGGAGAACGCAGGGGACTCTGATGTCACTCACACTCCTGGTGGTCAGCGGAGCACCCAAGCTCACTAACCTGTATAACAGCTGGATGGCCAGAGTTCTCGCAACAGGATTCAGACCAGTCAGTACAGATTGTTTGTGACTGTGCAGGGTGTTGAGCTCGGCACAACATTGATCCGCTGGGACGAGGACTGGGAGGCACACTGTTCCCAATCCAGAGGAGTAAACAATCCACTGGCAATCATATTGGAGATGATGGAAATGCATTGAAAATATTAGTGACACCCGTGCTTTACGTTGGTGACACCCGTGCTTTACGTTAGTGACACCCGTGCTTTACGTTAGTGACACCCGTGCTTTACGTTAGTGACACCCATGCTTTACGTTAGTGACACCCGTGCTTT
>XM_036938529.1
TGCCACACTTACAGTTAGTTACACGATGGCTTTAATTTCAGGGTCTTGATGTCATGCTCTTGACCTTAAGTGAAAAGAGCACTGTTTGGGTTCAAAACAAGCCCTATCAAGATTAGTGAGATCAGATGGTGTTTATAGCGCCTCAGAGCGTCACACCTTATTTACTCGGTGTTCAGTGAGGGGGAAGAGAAGTCAGCACCAACACAGATGTACTATCCAGTGTGTACATGGGGAGGCTGGGTTGAGAGAGAAGTCTAATGGGAACTGAAAGACAGGGGAACGCAGAGGGCAGCCCAGGGTTCCATGTGGTCCTGGGGAATGAGGCCTGTGACCTGGACTCCATGGTGTCAGCTCTGGCCTACGCATACTTCCTGTCCAAGacACTTGATTCTGGGAAAGTTCCTCTTCCCGTTCTGAACATTCCCCGGCAAGAGTTCCCGCTGCGCACGGACAATGCCttcctgctgagagagagtggccTCTCCCAGGATGACCTGGTGTTCCGGGACGAGGTGGACCTGGGGAGTCTACACCGGGCTGGCCGGCTGGACCTCACACTGGTGGACCACAACGTGCTGCCCAGCTCTGACTGTGATCTAGAAgaggtggtgttggaggtgatCGACCATCACCTCCTGGAGAGGAagccctctccctcctgtcccgtTACCGTGGAGACGGTGGGCTCCTGCTCCACCCTGGTGGCAGAACGGATCATCCAGAAAGCCCCTGAAGTCCTCGACCAACAGGTGGCCCAGCTCTTATATGGCACCATAGTGTTAGACTGTGTGAACATGGCCCCAGAGGCAGGGAAAGTCACCCCTAAAGACAGCCAGTACGCTGGCCTCCTGGAGACGCACTTCCCCAACCTGCCACCAAGGGGCGTCCTCTTCCAGTCCTTGCAGAATGCTAAATTTGACGTGTCAGGTCTTACCACAGAACAGATGCTTCTGAAAGACATGAAGGTGGCATCGGAAGGAGATTTAAAACTGGCAGTCAGTGTGATATATATGACACTGGAGGCTTTTCTACAGAGACAAAGCTTACAGCAAGAGCTCTGTGAGTTCTGCCACAAGCACAGCTACAACCTGGTGGTGGCCATGACGATCTCCTTCAACGATAACAAGGAGCCCTTCAGGCAGCTGGCCGTCTACAGCTCCAGCACCCTCTACAGGGGGGAGATGAGCCAAGCCTTGGAGCAAGCCCGGAGCCCCAGTCTGAGCCTGAGTCCAATGAGCAGCCCTTACTCGGACATCAGGGCTTACCTCCAGGGCAACACGTTGGCCTCCAGGAAGAAGGTGCTGCCCATCATCAAGGACTTCCTGAGGGACAGGGAGCGAAGAGAGGTGCATTGTGGGACCCTAGAGGAGAGTTACGAGGTACCACAGCAACGAACGTGCACTGAGGACGCTGGGATAGAGGAGGACTCCTACTTCCCCCCCACCCCTATGAACAGTCTGGTGGAGGGCTGTCCCCTTGACAACGGACTGCCCAAGATCAGCGCTGAAGCTCTGACGGAGAAGTTCAGCAAGATGGCCAGCGAAGAGGAGAACGCAGGGGACTCTGATGTCACTCACACTCCTGGTGGTCAGCGGAGCACCCAAGCTCACTAACCTGTATAACAGCTGGATGGCCAGAGTTCTCGCAACAGGATTCAGACCAGTCAGTACAGATTGTTTGTGACTGTGCAGGGTGTTGAGCTCGGCACAACATTGATCCGCTGGGACGAGGACTGGGAGGCACACTGTTCCCAATCCAGAGGAGTAAACAATCCACTGGCAATCATATTGGAGATGATGGAAATGCATTGAAAATATTAGTGACACCCGTGCTTTACGTTGGTGACACCCGTGCTTTACGTTAGTGACACCCGTGCTTTACGTTAGTGACACCCGTGCTTTACGTTAGTGACACCCATGCTTTACGTTAGTGACACCCGTGCTTT

Function

symbol description
prune1 Enables phosphatase activity and tubulin binding activity. Involved in regulation of microtubule polymerization and regulation of neurogenesis. Located in cytosol.

NR:

description
protein prune homolog

GO: NA

KEGG:

id description
K01514 PRUNE, PPX1; exopolyphosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938524.1 False 1982 mRNA 0.53 8 13624633 13630579
XM_036938529.1 True 1945 mRNA 0.54 8 13625566 13630579

Neighbor

gene id symbol gene type direction distance location
LOC110520769 LOC106593286 coding upstream 661 13604304 ~ 13623972 (+)
LOC110507693 LOC106574548 coding upstream 20485 13584124 ~ 13604148 (+)
LOC110517609 sbp1 coding upstream 42028 13574497 ~ 13582605 (+)
LOC110507631 LOC106574283 coding upstream 236712 13383188 ~ 13387921 (+)
LOC110507612 NA coding upstream 293957 13324937 ~ 13330676 (+)
LOC110520770 LOC106606072 coding downstream 2356 13632935 ~ 13643895 (+)
LOC110520780 LOC106574729 coding downstream 33260 13663839 ~ 13756558 (+)
LOC118944102 LOC106574856 coding downstream 285159 13915738 ~ 13920541 (+)
LOC110535355 LOC106574818 coding downstream 290873 13921452 ~ 13927188 (+)
LOC110535330 LOC106574784 coding downstream 330441 13961020 ~ 13976561 (+)
G114717 NA non-coding upstream 150886 13441854 ~ 13473747 (+)
G114712 NA non-coding upstream 192927 13429701 ~ 13431706 (+)
G114689 LOC106606048 non-coding upstream 280450 13338964 ~ 13344183 (+)
G114687 NA non-coding upstream 292180 13330758 ~ 13332453 (+)
G114897 NA non-coding downstream 53117 13683696 ~ 13684785 (+)
G114904 NA non-coding downstream 87653 13718232 ~ 13718727 (+)
G114990 NA non-coding downstream 104149 13734728 ~ 13734956 (+)
G115009 NA non-coding downstream 131244 13761823 ~ 13762180 (+)
G114323 NA other upstream 659703 12949360 ~ 12964930 (+)
G114263 NA other upstream 861806 12762232 ~ 12762827 (+)
G114244 NA other upstream 903318 12720730 ~ 12721315 (+)
G114243 NA other upstream 903940 12720408 ~ 12720693 (+)
G115190 NA other downstream 511303 14141882 ~ 14144267 (+)
G115189 NA other downstream 603935 14234514 ~ 14236854 (+)
G115289 NA other downstream 775465 14406044 ~ 14407912 (+)

Expression


Co-expression Network