LOC110520770 (LOC106606072)


Basic Information

Item Value
gene id LOC110520770
gene name LOC106606072
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13632935 ~ 13643895 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938534.1
GAAATGCAGAAAAACCTGTAGGGACAGGAAGAGGGTGAATTCACTGACAtagacacacatccacacaaacacacccacccacatcaACAGACTTCCTCATGAGAAAGGCAGATGAGCCAGCAGGCTGTCTTGTTTTGCAAGAAACACTAGTTCCTGGAGGTACCCATTCAGTGCTGAAATAATCATCTGATCTCACTCACAGGGTGGATGATATGGGGACCTATACAGAGCAGGGGGACCAGTACATGCTAAATGGGAGTCCAGAGGGGGTGAAGGCTGCTTCCTACATCCAGGACATGGAGCTGAGGGAGGAATGGCAGGATGAGGAGTTCCCCAGACCTCTTCCTGAAGATTCACATAGTCCTGAGACCCAAGGAGAACATGCAGAGAGACCAGCTCCACCCACAAGCCTGGCCCTGTCAGAAAAACCCATAAGGAAGAAGCGTCTGGTGGCGCCCACCCTCAGCCTGACCCTGTCCCGTACCGACTCAGCGGACCGCAGTGTGAAGTCAGGGGACACCGGCTACTCTGCCGCCGCCCTCTCACCCGACGAAGATGACACGGAGCTGGACATCAACCTGGAGGCCCTGGAGACGCCCTCGGACAGCGAGTCCTGCAACTTCCCTGACAGCATGCACGAACTGGagtgggaggATGACCTGCCACGGCTGGGCCGGGGGGAGGATGGTGTCTCAGGCACCACGGTGATGGAGCAGGCAGAGATGGGCTCGATGGAGCTAGACCAGGTGGACAACAGGGGGAGCCGCTGGAGAAGGTTCTGCGTCGCAGGACAGGAGTACCACGTCAACATGAGTGTCCTGGAGCCATACCTCCAGGTGCTCTCTCACGGAGGTTATTACGGGGAGGCTATGAACGCCATCATCACGTTCTCCTCCTGTTACCTACCAGAGAACACGGTGGAGAACTATGAGTACGTCATGGACAATCTCTTCAGGTACATAGTGGGGACGCTGGACCTGATGGTGTCAGAAGGCTATGTCATGGTGTACCTGTGCAGCATGGCTCCCAGGAATAAGATGCCCGCCATCAAATGGCTGCGACAGTGTTACACCTCCATTGACAGAAGGTTGAGGAAGGATCTGAAGGGGCTCTTTGTGGTCCACCCTGCCTGGTACATCAAAGCACTCATCACTGTCGTCAAGCCTTTCATCAGTGAGAAGTTCAGCCGGAAGATCCGCTTCATTCACAGCCTGCAGGAGCTGTCTGAGTACATCCCCATGGAACGCCTGCAGATTCCCGACAGCATCCGAGAGTATGATGCGAAGATGAACGGGTGAGGGACATATCGCGGGAAGCAAAAGAGCAGACATTGAGAGTGGATAGGCGAAGGAGGGGAAGACAGCAGACAACCAGAAACTATGGGCTGAATTACCATGAAAGTTCAAAAGTTAACTAGTCCAAATGTCACCCTGCAGGTATGCTTAGACGTGCAGCACTTTTGTTGTACAGAAATGAAAGACTTTGTGTCTACAGACACACCTTTAATTTATTCATCGTTGAATGTAATGTCACTAAAGAAGTTCACTTCCCCAAGCCACTGGCTTTGCAACAGTTTCATAACTGCCCCTATTTTGTGGTACTTGAATGCAACCCTATCATATGTATTGATGCCAGAGTGATTTGTGGGACCTGTCGTCAAGGAGCGACCTACAGTCAGTTTGAACACAACATAACACTTAGATGAAAGGTCCAGATGGTTTTCTGTTACAGTTACCTTCACTGGAGCTCACATTGACTGCTGCTTTATCTGTTAGGGCTTACTGCACTCTAGTGCCAAGTACAACACTTTTGACTGTCAGGTTGTCAGGGAGATGGGATGTCACCTTTTAATGTTTACTAAAATGTGATTGATGCACAACAAATACTTTAGGTTAAGATGGAGACAAAGTCTATTTTTATAAAATAAATCAGAATTTACATCATGACATAAATTCTGACGTATTTTACTGTATTATTCTGACCTTGTAAACCTAAGGCTTTTTATAGCCTACCCTCAGAGCAAATATTTATGTAAGAAAACTCTTGAACAACCTGTACTTTTATAATTGTCATTTTCTAACCATGCTTTCTATAGCTGAATGATCTTCTCACTTTAAGACATTTGTTTTAGAGCACTGCTTACCACGTGTAAGGGCTTTTACACTATTTTAAAGGAAGGGGTGTCACCATGGAAACGCTGCAGGCATTCAGGAAATGGCAGCCACAGGAAGTGAGGAAGAAGAATACTGCTGCCTACATTTACTGTAACTCGTACACAGGAAACAGTGACATGTCCATTAATTAGGGATGATGAAGAATATTCATCTGAAAATGAAAAACATTTTTCTGAAAAAGGGGAGCTATTGAATGTATTGTTCTGTTATAGTCCTTTATGCTGactaaaaaacatgagctggcgcacacccagaaaaaAATGTCTGTGTGGAGGTGCAGACTAACAACGAAAAAATTATAAGCTATCAAAATAAAGTCACatactccatatataaa
>XM_036938540.1
GTTATTGTTGCCGAAATGTGTTTCCTTTCAGTGTGGAGTCCAGAGGGGGTGAAGGCTGCTTCCTACATCCAGGACATGGAGCTGAGGGAGGAATGGCAGGATGAGGAGTTCCCCAGACCTCTTCCTGAAGATTCACATAGTCCTGAGACCCAAGGAGAACATGCAGAGAGACCAGCTCCACCCACAAGCCTGGCCCTGTCAGAAAAACCCATAAGGAAGAAGCGTCTGGTGGCGCCCACCCTCAGCCTGACCCTGTCCCGTACCGACTCAGCGGACCGCAGTGTGAAGTCAGGGGACACCGGCTACTCTGCCGCCGCCCTCTCACCCGACGAAGATGACACGGAGCTGGACATCAACCTGGAGGCCCTGGAGACGCCCTCGGACAGCGAGTCCTGCAACTTCCCTGACAGCATGCACGAACTGGagtgggaggATGACCTGCCACGGCTGGGCCGGGGGGAGGATGGTGTCTCAGGCACCACGGTGATGGAGCAGGCAGAGATGGGCTCGATGGAGCTAGACCAGGTGGACAACAGGGGGAGCCGCTGGAGAAGGTTCTGCGTCGCAGGACAGGAGTACCACGTCAACATGAGTGTCCTGGAGCCATACCTCCAGGTGCTCTCTCACGGAGGTTATTACGGGGAGGCTATGAACGCCATCATCACGTTCTCCTCCTGTTACCTACCAGAGAACACGGTGGAGAACTATGAGTACGTCATGGACAATCTCTTCAGGTACATAGTGGGGACGCTGGACCTGATGGTGTCAGAAGGCTATGTCATGGTGTACCTGTGCAGCATGGCTCCCAGGAATAAGATGCCCGCCATCAAATGGCTGCGACAGTGTTACACCTCCATTGACAGAAGGTTGAGGAAGGATCTGAAGGGGCTCTTTGTGGTCCACCCTGCCTGGTACATCAAAGCACTCATCACTGTCGTCAAGCCTTTCATCAGTGAGAAGTTCAGCCGGAAGATCCGCTTCATTCACAGCCTGCAGGAGCTGTCTGAGTACATCCCCATGGAACGCCTGCAGATTCCCGACAGCATCCGAGAGTATGATGCGAAGATGAACGGGTGAGGGACATATCGCGGGAAGCAAAAGAGCAGACATTGAGAGTGGATAGGCGAAGGAGGGGAAGACAGCAGACAACCAGAAACTATGGGCTGAATTACCATGAAAGTTCAAAAGTTAACTAGTCCAAATGTCACCCTGCAGGTATGCTTAGACGTGCAGCACTTTTGTTGTACAGAAATGAAAGACTTTGTGTCTACAGACACACCTTTAATTTATTCATCGTTGAATGTAATGTCACTAAAGAAGTTCACTTCCCCAAGCCACTGGCTTTGCAACAGTTTCATAACTGCCCCTATTTTGTGGTACTTGAATGCAACCCTATCATATGTATTGATGCCAGAGTGATTTGTGGGACCTGTCGTCAAGGAGCGACCTACAGTCAGTTTGAACACAACATAACACTTAGATGAAAGGTCCAGATGGTTTTCTGTTACAGTTACCTTCACTGGAGCTCACATTGACTGCTGCTTTATCTGTTAGGGCTTACTGCACTCTAGTGCCAAGTACAACACTTTTGACTGTCAGGTTGTCAGGGAGATGGGATGTCACCTTTTAATGTTTACTAAAATGTGATTGATGCACAACAAATACTTTAGGTTAAGATGGAGACAAAGTCTATTTTTATAAAATAAATCAGAATTTACATCATGACATAAATTCTGACGTATTTTACTGTATTATTCTGACCTTGTAAACCTAAGGCTTTTTATAGCCTACCCTCAGAGCAAATATTTATGTAAGAAAACTCTTGAACAACCTGTACTTTTATAATTGTCATTTTCTAACCATGCTTTCTATAGCTGAATGATCTTCTCACTTTAAGACATTTGTTTTAGAGCACTGCTTACCACGTGTAAGGGCTTTTACACTATTTTAAAGGAAGGGGTGTCACCATGGAAACGCTGCAGGCATTCAGGAAATGGCAGCCACAGGAAGTGAGGAAGAAGAATACTGCTGCCTACATTTACTGTAACTCGTACACAGGAAACAGTGACATGTCCATTAATTAGGGATGATGAAGAATATTCATCTGAAAATGAAAAACATTTTTCTGAAAAAGGGGAGCTATTGAATGTATTGTTCTGTTATAGTCCTTTATGCTGactaaaaaacatgagctggcgcacacccagaaaaaAATGTCTGTGTGGAGGTGCAGACTAACAACGAAAAAATTATAAGCTATCAAAATAAAGTCACatactccatatataaa
>XM_036938538.1
CAGCCGAGCACGTACAAAGCCCCCTGATTGGCTAAGCTAATGTATTGTTTGCTGTGTGGTTGGGTCGTCAGAACACTGCACTTGTGCGAACGTCGGAGTGTTTACAATTGACGACTTTTAAATGACTTATCTTCttgataaacatttttttttactcatctttTAATCATGATGTCTGCATGAGTGCGCGTTTATACAGAGGAAAGGGTGAAAGGAGTCCAGAGGGGGTGAAGGCTGCTTCCTACATCCAGGACATGGAGCTGAGGGAGGAATGGCAGGATGAGGAGTTCCCCAGACCTCTTCCTGAAGATTCACATAGTCCTGAGACCCAAGGAGAACATGCAGAGAGACCAGCTCCACCCACAAGCCTGGCCCTGTCAGAAAAACCCATAAGGAAGAAGCGTCTGGTGGCGCCCACCCTCAGCCTGACCCTGTCCCGTACCGACTCAGCGGACCGCAGTGTGAAGTCAGGGGACACCGGCTACTCTGCCGCCGCCCTCTCACCCGACGAAGATGACACGGAGCTGGACATCAACCTGGAGGCCCTGGAGACGCCCTCGGACAGCGAGTCCTGCAACTTCCCTGACAGCATGCACGAACTGGagtgggaggATGACCTGCCACGGCTGGGCCGGGGGGAGGATGGTGTCTCAGGCACCACGGTGATGGAGCAGGCAGAGATGGGCTCGATGGAGCTAGACCAGGTGGACAACAGGGGGAGCCGCTGGAGAAGGTTCTGCGTCGCAGGACAGGAGTACCACGTCAACATGAGTGTCCTGGAGCCATACCTCCAGGTGCTCTCTCACGGAGGTTATTACGGGGAGGCTATGAACGCCATCATCACGTTCTCCTCCTGTTACCTACCAGAGAACACGGTGGAGAACTATGAGTACGTCATGGACAATCTCTTCAGGTACATAGTGGGGACGCTGGACCTGATGGTGTCAGAAGGCTATGTCATGGTGTACCTGTGCAGCATGGCTCCCAGGAATAAGATGCCCGCCATCAAATGGCTGCGACAGTGTTACACCTCCATTGACAGAAGGTTGAGGAAGGATCTGAAGGGGCTCTTTGTGGTCCACCCTGCCTGGTACATCAAAGCACTCATCACTGTCGTCAAGCCTTTCATCAGTGAGAAGTTCAGCCGGAAGATCCGCTTCATTCACAGCCTGCAGGAGCTGTCTGAGTACATCCCCATGGAACGCCTGCAGATTCCCGACAGCATCCGAGAGTATGATGCGAAGATGAACGGGTGAGGGACATATCGCGGGAAGCAAAAGAGCAGACATTGAGAGTGGATAGGCGAAGGAGGGGAAGACAGCAGACAACCAGAAACTATGGGCTGAATTACCATGAAAGTTCAAAAGTTAACTAGTCCAAATGTCACCCTGCAGGTATGCTTAGACGTGCAGCACTTTTGTTGTACAGAAATGAAAGACTTTGTGTCTACAGACACACCTTTAATTTATTCATCGTTGAATGTAATGTCACTAAAGAAGTTCACTTCCCCAAGCCACTGGCTTTGCAACAGTTTCATAACTGCCCCTATTTTGTGGTACTTGAATGCAACCCTATCATATGTATTGATGCCAGAGTGATTTGTGGGACCTGTCGTCAAGGAGCGACCTACAGTCAGTTTGAACACAACATAACACTTAGATGAAAGGTCCAGATGGTTTTCTGTTACAGTTACCTTCACTGGAGCTCACATTGACTGCTGCTTTATCTGTTAGGGCTTACTGCACTCTAGTGCCAAGTACAACACTTTTGACTGTCAGGTTGTCAGGGAGATGGGATGTCACCTTTTAATGTTTACTAAAATGTGATTGATGCACAACAAATACTTTAGGTTAAGATGGAGACAAAGTCTATTTTTATAAAATAAATCAGAATTTACATCATGACATAAATTCTGACGTATTTTACTGTATTATTCTGACCTTGTAAACCTAAGGCTTTTTATAGCCTACCCTCAGAGCAAATATTTATGTAAGAAAACTCTTGAACAACCTGTACTTTTATAATTGTCATTTTCTAACCATGCTTTCTATAGCTGAATGATCTTCTCACTTTAAGACATTTGTTTTAGAGCACTGCTTACCACGTGTAAGGGCTTTTACACTATTTTAAAGGAAGGGGTGTCACCATGGAAACGCTGCAGGCATTCAGGAAATGGCAGCCACAGGAAGTGAGGAAGAAGAATACTGCTGCCTACATTTACTGTAACTCGTACACAGGAAACAGTGACATGTCCATTAATTAGGGATGATGAAGAATATTCATCTGAAAATGAAAAACATTTTTCTGAAAAAGGGGAGCTATTGAATGTATTGTTCTGTTATAGTCCTTTATGCTGactaaaaaacatgagctggcgcacacccagaaaaaAATGTCTGTGTGGAGGTGCAGACTAACAACGAAAAAATTATAAGCTATCAAAATAAAGTCACatactccatatataaa
>XM_036938543.1
CCGAGCACGTACAAAGCCCCCTGATTGGCTAAGCTAATGTATTGTTTGCTGTGTGGTTGGGTCGTCAGAACACTGCACTTGTGCGAACGTCGGAGTGTTTACAATTGACGACTTTTAAATGACTTATCTTCttgataaacatttttttttactcatctttTAATCATGATGTCTGCATGAGTGCGCGTTTATACAGAGGAAAGGGTGAAAGTGTGATGCTATATGAACGTCATTACTTTAAAAGCCCAATTTCCTTTTACGGTGCGTAAAGTCTAATTCATATGACAGGAGTCCAGAGGGGGTGAAGGCTGCTTCCTACATCCAGGACATGGAGCTGAGGGAGGAATGGCAGGATGAGGAGTTCCCCAGACCTCTTCCTGAAGATTCACATAGTCCTGAGACCCAAGGAGAACATGCAGAGAGACCAGCTCCACCCACAAGCCTGGCCCTGTCAGAAAAACCCATAAGGAAGAAGCGTCTGGTGGCGCCCACCCTCAGCCTGACCCTGTCCCGTACCGACTCAGCGGACCGCAGTGTGAAGTCAGGGGACACCGGCTACTCTGCCGCCGCCCTCTCACCCGACGAAGATGACACGGAGCTGGACATCAACCTGGAGGCCCTGGAGACGCCCTCGGACAGCGAGTCCTGCAACTTCCCTGACAGCATGCACGAACTGGagtgggaggATGACCTGCCACGGCTGGGCCGGGGGGAGGATGGTGTCTCAGGCACCACGGTGATGGAGCAGGCAGAGATGGGCTCGATGGAGCTAGACCAGGTGGACAACAGGGGGAGCCGCTGGAGAAGGTTCTGCGTCGCAGGACAGGAGTACCACGTCAACATGAGTGTCCTGGAGCCATACCTCCAGGTGCTCTCTCACGGAGGTTATTACGGGGAGGCTATGAACGCCATCATCACGTTCTCCTCCTGTTACCTACCAGAGAACACGGTGGAGAACTATGAGTACGTCATGGACAATCTCTTCAGGTACATAGTGGGGACGCTGGACCTGATGGTGTCAGAAGGCTATGTCATGGTGTACCTGTGCAGCATGGCTCCCAGGAATAAGATGCCCGCCATCAAATGGCTGCGACAGTGTTACACCTCCATTGACAGAAGGTTGAGGAAGGATCTGAAGGGGCTCTTTGTGGTCCACCCTGCCTGGTACATCAAAGCACTCATCACTGTCGTCAAGCCTTTCATCAGTGAGAAGTTCAGCCGGAAGATCCGCTTCATTCACAGCCTGCAGGAGCTGTCTGAGTACATCCCCATGGAACGCCTGCAGATTCCCGACAGCATCCGAGAGTATGATGCGAAGATGAACGGGTGAGGGACATATCGCGGGAAGCAAAAGAGCAGACATTGAGAGTGGATAGGCGAAGGAGGGGAAGACAGCAGACAACCAGAAACTATGGGCTGAATTACCATGAAAGTTCAAAAGTTAACTAGTCCAAATGTCACCCTGCAGGTATGCTTAGACGTGCAGCACTTTTGTTGTACAGAAATGAAAGACTTTGTGTCTACAGACACACCTTTAATTTATTCATCGTTGAATGTAATGTCACTAAAGAAGTTCACTTCCCCAAGCCACTGGCTTTGCAACAGTTTCATAACTGCCCCTATTTTGTGGTACTTGAATGCAACCCTATCATATGTATTGATGCCAGAGTGATTTGTGGGACCTGTCGTCAAGGAGCGACCTACAGTCAGTTTGAACACAACATAACACTTAGATGAAAGGTCCAGATGGTTTTCTGTTACAGTTACCTTCACTGGAGCTCACATTGACTGCTGCTTTATCTGTTAGGGCTTACTGCACTCTAGTGCCAAGTACAACACTTTTGACTGTCAGGTTGTCAGGGAGATGGGATGTCACCTTTTAATGTTTACTAAAATGTGATTGATGCACAACAAATACTTTAGGTTAAGATGGAGACAAAGTCTATTTTTATAAAATAAATCAGAATTTACATCATGACATAAATTCTGACGTATTTTACTGTATTATTCTGACCTTGTAAACCTAAGGCTTTTTATAGCCTACCCTCAGAGCAAATATTTATGTAAGAAAACTCTTGAACAACCTGTACTTTTATAATTGTCATTTTCTAACCATGCTTTCTATAGCTGAATGATCTTCTCACTTTAAGACATTTGTTTTAGAGCACTGCTTACCACGTGTAAGGGCTTTTACACTATTTTAAAGGAAGGGGTGTCACCATGGAAACGCTGCAGGCATTCAGGAAATGGCAGCCACAGGAAGTGAGGAAGAAGAATACTGCTGCCTACATTTACTGTAACTCGTACACAGGAAACAGTGACATGTCCATTAATTAGGGATGATGAAGAATATTCATCTGAAAATGAAAAACATTTTTCTGAAAAAGGGGAGCTATTGAATGTATTGTTCTGTTATAGTCCTTTATGCTGactaaaaaacatgagctggcgcacacccagaaaaaAATGTCTGTGTGGAGGTGCAGACTAACAACGAAAAAATTATAAGCTATCAAAATAAAGTCACatactccatatataaa

Function

NR:

description
bcl-2/adenovirus E1B 19 kDa-interacting protein 2-like protein

GO: NA

KEGG:

id description
K18448 BNIP2; BCL2/adenovirus E1B 19 kDa protein-interacting protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938534.1 False 2511 mRNA 0.47 10 13632935 13643895
XM_036938540.1 False 2290 mRNA 0.47 10 13634922 13643895
XM_036938538.1 False 2469 mRNA 0.47 10 13635093 13643895
XM_036938543.1 True 2543 mRNA 0.46 11 13635096 13643895

Neighbor

gene id symbol gene type direction distance location
LOC110513073 prune1 coding upstream 2356 13624633 ~ 13630579 (+)
LOC110520769 LOC106593286 coding upstream 8963 13604304 ~ 13623972 (+)
LOC110507693 LOC106574548 coding upstream 28787 13584124 ~ 13604148 (+)
LOC110517609 sbp1 coding upstream 50330 13574497 ~ 13582605 (+)
LOC110507631 LOC106574283 coding upstream 245014 13383188 ~ 13387921 (+)
LOC110520780 LOC106574729 coding downstream 19944 13663839 ~ 13756558 (+)
LOC118944102 LOC106574856 coding downstream 271843 13915738 ~ 13920541 (+)
LOC110535355 LOC106574818 coding downstream 277557 13921452 ~ 13927188 (+)
LOC110535330 LOC106574784 coding downstream 317125 13961020 ~ 13976561 (+)
LOC110534090 LOC106574714 coding downstream 384071 14027966 ~ 14043643 (+)
G114717 NA non-coding upstream 159188 13441854 ~ 13473747 (+)
G114712 NA non-coding upstream 201229 13429701 ~ 13431706 (+)
G114689 LOC106606048 non-coding upstream 288752 13338964 ~ 13344183 (+)
G114687 NA non-coding upstream 300482 13330758 ~ 13332453 (+)
LOC110507612 NA non-coding upstream 303063 13324937 ~ 13330676 (+)
G114897 NA non-coding downstream 39801 13683696 ~ 13684785 (+)
G114904 NA non-coding downstream 74337 13718232 ~ 13718727 (+)
G114990 NA non-coding downstream 90833 13734728 ~ 13734956 (+)
G115009 NA non-coding downstream 117928 13761823 ~ 13762180 (+)
G114323 NA other upstream 668005 12949360 ~ 12964930 (+)
G114263 NA other upstream 870108 12762232 ~ 12762827 (+)
G114244 NA other upstream 911620 12720730 ~ 12721315 (+)
G114243 NA other upstream 912242 12720408 ~ 12720693 (+)
G115190 NA other downstream 497987 14141882 ~ 14144267 (+)
G115189 NA other downstream 590619 14234514 ~ 14236854 (+)
G115289 NA other downstream 762149 14406044 ~ 14407912 (+)

Expression


Co-expression Network