LOC110520780 (LOC106574729)


Basic Information

Item Value
gene id LOC110520780
gene name LOC106574729
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13663839 ~ 13756558 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938564.1
AGTAAACACGGAAGTTAATACAGTAGGCTATGGATGTTTTAAACTGGTGGAAATAGCCAACACCTATCTGCAAACAGTTAATTCTCCTGTAAGAATCCCGAAACAAGATGCCCAAGTTTGAGGAGCTAGAAGCCCATTCATCCTGCCATGTCCACTGCCCCTCCACTCTTATAACTCCTGTCCCCGGCGACCTGATTGCCAAAAGATACAGCATCCTACAGAGATTGGGCAGAGGGAGTTTTAGCACTGTTTACCTCGTTCAAGACACTAGAGCAAGGGATGGGGAGAAACTTAAGGTGCTGAAGGAGATCCCTCTGGGGGACCTGCGTCCTAACGAGACAGTCCAGGCATCCCAGGAGGCTCAGCTCCTGTCCCAGCTCCACCACCCAGCAATCATCACTTTCTACAGCAGCTTTCTGCATAGAGACTCCTTCTGCATCATCACTGAGTACTGTGAGGACAGGGACTTGGACTGTCATCTGGAGGAAGTGAGAGAAGCAGGGCAGAGCTTGCCTGAGACCCAGGTCACTGATTGGCTGATCCAGCTGCTGCTTGGACTCCACTACATGCATAACAGGCGCATCCTCCACAGAGATCTGAAGGCCAAAAATATCTTCCTGAAAAGGAACATAGTTAAAATCGGTGATTTTGGGGTGTCCTGTCTGCTGATGGGGTCATGTGACCTGGCCACCACCTTCACGGGCACGCCTTACTACATGAGCCCTGAAGTCCTGAACCACCACGGTTACGACTCCAAGTCTGATATCTGggccaTAGGCTGTATCCTGTATGAGATGTGTTGCCTGTCACACGCCTTTGAAGGACACAACTTCTTGTCAGTTGTGATGAAGATAGTGGAGGGAGAAACCCCCAGACTGACAGGCAGATACTCTCTGGAGCTCAACACACTCATGCAAAGGATGCTGGAGAAAACCCCGTCATCCAGGCTCTCTGCTGCAGAAGCTCTGAAGACAAAATTCATTGAGGACAGTATGCAGATCTTAAAACACAAGTTCTGTAGTCTGACACTGAGAGACAAGACATCGGTGGGAGAAAGAGACGCAGCACAGATATTGAAAGCGGTGCAGAGAAAGGTGCACCTTCAGACACTGAGGGAGAAGTCAGAGCTAGACAGAATGACCCCCAGGGAGAGAATGAGGCTGAGGAAGCTGCAGGCTGCTGACGACAAGGCCAGGAGGCTTAGGAGACTTGCTGAGGAGAAATACCAGGAAAACCACTTCCGAATGCAGGAGCTGAGGAGCCGCCATTTTGAGAAAGTCAGTTTGGACGTCTTGAATGAGAGTGCAGGAGATGCAGTCCACCAGACTGCACCAATCACAGCTGAGGACTACCGGTCGCTGGGTTGCTCACAACCAATGGGAAGGCAGCAGCAGGACAAGATGCGAATGTCTGAGCCAGTAGGGTGTGagatCCCAGAGGACCCTCAGACTGCAGAGGTGTATTATTACATGGATGGATTTGAGTCCTGcactgatgaagaggaggaggaaagagaggaaggggacacCGTGACCTCAGAAACCCTCTGTCATACCTATGGacagGACAGCGACCTGGAGGCCATGATGAGACACATGGAGCAGGTTCTGGAAGGAGAGCTCAGCGTGGCTGAAGCAGTGCCAGAAGAGGGCCAGTGGGTCCCCATGGGGCCTCCAGTCATCAACAGCACCATGGCTGAGACAAGGATTCAGCGCATGACTGAGTCAGTGTCCCGTCGGCTGGGTCTAACCGTCTTCCAGAGGGTGTATACCTACCTGAAGGGAGCCAGGGAGAGGCAGGAGGATGAGGGGAGCATCAGACAGGCCCTCAGCAGCCTGGTGGAGAGGCCCAGTGATGGCTTTGAAGTGGACCAACTGCTGTACTACGAAGAGCAGCTCCAGGGAGCcagagagggagccagagagggaGCCGGAGAGGGAGCCGGAGAGGGAGCCGGAGAGGGAGCCGGAGAGGGAGCCGGAGAGGGAGCCCGGTGAAAAACATGTCTGACACTGACTAACCTGCGATCATGTTGCCTATCCAAGCATTTCAGAAAGAGCACATCTTGttgctctccaggaccagggttggtgacctaGTAGATCAACAGAGATGACAGACAGTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGAGAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGAGAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGACAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGAGAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGAGAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGAGAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGACAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGACAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGACAGACATTTACTTCATGATAGACCAGGGTAGGTGACCTAGTAGATCAACAGAGATGAGAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGACAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGACAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGACAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGAGAGACAGTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGACAGACATTTACTTCATGATAGACCAGGGTTGATGACCTAGTAGATCAACAGAGATAAGACATTTACTTCATGATAGACCAGGGTTGATGACCTAGTAGATCAACAGAGATAAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGAGAGACATTTACTTCATGatagaccagggttggtgacctaGTAGAT
>TU131892
CTGGAGCTCAACACACTCATGCAAAGGATGCTGGAGAAAACCCCGTCATCCAGGCTCTCTGCTGCAGAAGCTCTGAAGACAAAATTCATTGAGGACAGTATGCAGATCTTAAAACACAAGTTCTGTAGTCTGACACTGAGAGACAAGACATCGGTGGGAGAAAGAGACGCAGCACAGATATTGAAAGCGGTGCAGAGAAAGGTGCACCTTCAGACACTGAGGGAGAAGTCAGAGCTAGACAGAATGACCCCCAGGGAGAGAATGAGGCTGAGGAAGCTGCAGGCTGCTGACGACAAGGCCAGGAGGCTTAGGTAGGACACCCTTACAT
>TU132038
TGatagaccagggttggtgacctaGTAGATCAACAGAGATGAGAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGAGAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGACAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGAGAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGAGAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGAGAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGACAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGACAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGACAGACATTTACTTCATGATAGACCAGGGTAGGTGACCTAGTAGATCAACAGAGATGAGAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGACAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGACAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGACAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGAGAGACAGTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGACAGACATTTACTTCATGATAGACCAGGGTTGATGACctaGTAGATCAACAGAGATGAGACATTTACTTCATGatagaccagggttggtgacctaGTAGATCAACAGAGATGACAGACATTTACTTCATGATAGTTATTTTCTTTTTGTTCTTCCTGTCATTTCCATCTAGAAGAACAAGCAATTCAATTAAATCAATATTGAATATTAGTGCATAGATTTTGGGCTAgtttctatcagaataacataGTGGTTGTTTTTGTGGTGTTAAAGGGggaactgcgttagagctgtcaaaaATCCACAAGCGGCTCATTTCGTTAGCTTGAGATGACAATTTATTGCAACAAAAGTACCTGACTTTATAAACTAACAAATCCCATGCAGCAACGTTATAAGTTCATGCAGCAACGTTCAAACATTCAAATGCGTGATGTTCAGTTGTGTACACCTCGATTGGACAGATAGGCTATTATATAACCCCATCCAAATGAACATGAAaactatcaggtatgaaggtaagactcaggcaaaagacaggtcaaggcaggcaggggtcagtaaaccagaggtgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938564.1 False 3238 mRNA 0.49 16 13663839 13756030
TU131892 False 328 TUCP 0.31 4 13701610 13709374
TU132038 True 1468 lncRNA 0.41 2 13754924 13756558

Neighbor

gene id symbol gene type direction distance location
LOC110520770 LOC106606072 coding upstream 19944 13632935 ~ 13643895 (+)
LOC110513073 prune1 coding upstream 33260 13624633 ~ 13630579 (+)
LOC110520769 LOC106593286 coding upstream 39867 13604304 ~ 13623972 (+)
LOC110507693 LOC106574548 coding upstream 59691 13584124 ~ 13604148 (+)
LOC110517609 sbp1 coding upstream 81234 13574497 ~ 13582605 (+)
LOC118944102 LOC106574856 coding downstream 159708 13915738 ~ 13920541 (+)
LOC110535355 LOC106574818 coding downstream 165422 13921452 ~ 13927188 (+)
LOC110535330 LOC106574784 coding downstream 204990 13961020 ~ 13976561 (+)
LOC110534090 LOC106574714 coding downstream 271936 14027966 ~ 14043643 (+)
LOC110535435 LOC106585480 coding downstream 330989 14087019 ~ 14135046 (+)
G114717 NA non-coding upstream 190092 13441854 ~ 13473747 (+)
G114712 NA non-coding upstream 232133 13429701 ~ 13431706 (+)
G114689 LOC106606048 non-coding upstream 319656 13338964 ~ 13344183 (+)
G114687 NA non-coding upstream 331386 13330758 ~ 13332453 (+)
LOC110507612 NA non-coding upstream 333967 13324937 ~ 13330676 (+)
G115009 NA non-coding downstream 5793 13761823 ~ 13762180 (+)
G115018 NA non-coding downstream 24895 13780925 ~ 13781127 (+)
G115036 NA non-coding downstream 44875 13800905 ~ 13801181 (+)
G115042 NA non-coding downstream 50374 13806404 ~ 13806741 (+)
G115044 NA non-coding downstream 51736 13807766 ~ 13807965 (+)
G114323 NA other upstream 698909 12949360 ~ 12964930 (+)
G114263 NA other upstream 901012 12762232 ~ 12762827 (+)
G114244 NA other upstream 942524 12720730 ~ 12721315 (+)
G114243 NA other upstream 943146 12720408 ~ 12720693 (+)
G115190 NA other downstream 385852 14141882 ~ 14144267 (+)
G115189 NA other downstream 478484 14234514 ~ 14236854 (+)
G115289 NA other downstream 650014 14406044 ~ 14407912 (+)
sec61b sc61b other downstream 800425 14556397 ~ 14565113 (+)
G114990 NA non-coding upstream 19968 13734728 ~ 13734956 (+)
G114904 NA non-coding upstream 36197 13718232 ~ 13718727 (+)
G114897 NA non-coding upstream 70139 13683696 ~ 13684785 (+)
LOC110520780 LOC106574729 other upstream 45550 13663839 ~ 13756558 (+)

Expression


Co-expression Network