LOC110535330 (LOC106574784)


Basic Information

Item Value
gene id LOC110535330
gene name LOC106574784
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13961020 ~ 13976561 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620271.2
GAGGCACAGAGTTTCAAAAACCAGAGACGCAACATTGCGAGACTTCGTGGAACGTTTACCTAAATTGCAACATTAAAACATCTAAACACATTCCCATGACTGTCATATAAGTTCAAATGAACTAGTCTATGCCTACTGTGACCAGAGACAATATGGGAGTGACTGAGATGAGGTATGGAAAGTGAAACTTAAGGAAAGGGATAGCCTCACTTAGCCAGTCCCATGACTGCTGAAACTCTTCACTAGGAAAGACATCACATCCTAGACAGAGCACAGCACACCATGGGTGTCCAGGGATTTCCCAGTGTTGCAGTGCTGCAGAACAGATGCAGCCAGACACTCTGGATCAGACCTGCATATCCTGCAGGCCCTGCTACTAGGTTTGGTGTACGGAGAGCTCTGCAGACAGAGGAAGAGCCAAAGAGAGTTCATGGAGGGACCAgtgttggagagggagagggacaagagAGGGACAAGGAGTCTCAACCTGTGTGTGGCCCACGCCTACAGCCAGTGGCAGTGCTACCTGAAAGAATGCCTTGACCTGAACCAACTGCTGTGCCTCCTGAGCCTCAGTGTGCCTGGTTTGGATCAGAGTCATGGAGGGGATTATGATGCTTTTGAGGACCAGGTCTGCAAGTTCTTTAAGGCTCTGAGAGACTGCGACATTGACCCCTTTGTGATTGTAGATGGGGGCTCCGACTACACCGACAAAAAGtttgaaacaaaaaaaaacagagctcTATCAAGGATCAACAGAGCGAAAAGCTTGTCCATGGGGCTTCAGGGGAGCGGTGGTATATTACCAACCCTCATCAAACATGTCTTCAAACAGGTCCTCATCAGCCTGAATGTGCCGTACGCACAGTGCATTTGTGAGGCAGACCAAGATATAGCCTCCCTGGCTCGAAGTTGGAACTGTCCAGTGCTGTCCAATGACAGTGACTTTTATATCTTTGACATCCAGGCAGGATTTCTGCCCACCTCCCATTTTCACTGGCAGAGAGTGTCTATGCAACGCGGGAGCTCTATAAGATACATTCCCTGCAAGCAGTACACCACAACAAGCTTCTGCAGACACTTCAACATCAACAGACAGGTTCTCCCAGTCTTCGCTGCCATGTTAGGAAACGACTACGTCAAGTTGCATAACATGGGTGTTTCCCTCAGGTGGGAAGAATACACGTCAATGGAAGGAAGGTTTGCCCGCTTCGACGGCTTGCTGAATTGGCTGGCCCGCTTCCATGGGCAGAAGGATGCCTTGGACTCCGTGCTCAGGCTCATCAGTCATTGTAACAACAGACAGAAAACAGGTGCTGTCCTCCATGGCCTCTCCCTGGGCATAGAAGAGTACCATCTTCCCCCTAGTTGCCTGGAGCGGTTCTTCAACGATGGAGTGGGACCAGGGCCCGGCCGTCTCCCAGAGCCTCTGAGGGTCCTTCCAGACTGGACCCTGCTGCCATTGATGGAAGGTAGACTTCCCTCCTGCATGGTAGACGTGCTGCTGCTGGGAAGGATGATGCAGGGTGCCCAGGTGGAAGATCCCAGCTTGCCATGTGGGAACAACACCTCTCGGTCCATACGACAGGTACTCTACGGGCTGCTGCTGGGTGGGAGGAGGGCAGACCACAGCCGTCAGAGACCCCCAGTGGATGAAGTGGAGGAGTATTACAGGGAAGGCAAGAGCCTGACCAGCAGCATGGTTGAAGCCATCCTTCCCAGTGCTGCAGAACATATACAGCTAGACACTCTGCATCAGGCTCCAAGGTTAGTGCAGCTTAAGGTGTTTTTGGAGACACTTGGTGTGTCCCAGTCCACTTTGAGCGGTGTCCCGCCTCATCTGCGTCTTCCTGTGGCTGTCACCTGCTACTGGCTGAGGCACGCCCATTCCCCTCCAGAACTCCCTGTCCTGCAGGCCCTGCTACTAGGATTGGTGTATGGAGAGCTctgtagaaagagaaagagccaAAGAGGGTTTATGGAGGGACCAGTGTTGGAGAGGCTGAGAGGGCTGATTCAGAGAGGTAGAAGGAGCCTAGACCTGGGTGTGGCCCACGCCTACAGCCAGTGGCAGTGCTGCCTGAAAGAAAGCCTTCACCTCAACCAACTGCTGTGCTTCCCTCTAGACGAGCCTCAGTGTGCCTGGCTGTACAAGGGCACTCTGGTGCACCAGCTTGTGACCAAACTGAGAGGGGGGTTAACCCCGGATTCTCTCCTGATGGGAGACCTTGGCTCTGgacagctgtatagggccatgCTGGGAGCCATACTCAACTCCCATGATTCTCATGAGGCAGCTGTCATCCCATTTGTGTCTGGGCTGCAGAGGGCCACACCTCCATCCTTGACACAGCCACTGGACGATCTGACGGCCCATCTACACATTCTGGCTCTggaatatgatgatgatgatggtgctgGAGGTGGGAGCAAGGCCAAGTCAGAGGACGATCTGGGTTGGACTTTGGTCTCAGTGCGGACCCGGCACAAGAGCAAGGACAGATTCAACCGAGCTAGGAATCCAGAATTCTCCCGGAAGCAGGGGCGGATCGGCTGGGAATAGGGAGGGACCATTATATAACGGTTTAGATATATAGACGTTCTGCTCAACTCTTCAATGTTTTTATTGTTCTTGTGTGTACCTATTATGACttaatttacattttattagCATGAACTATAATAGAAGTTATGATAAGTTTGACTTTATTTaatatgtttttatttctttGCTCTCTACTGTAAAAACTTATTTTGGTCTTTGAAAATAGCTCTATAAATCCCATTTATTGTTACGATTAtattactgctgctcttgaaaTATTTTATCATCAAAatgaaaaataacatttaaaccAGCTATTCTTGAGAATGATTGGCTATACACACTAAAGTATATCTCTGCTTTGACAGTATATTTTAAATTAAATTCTTATTC
>XM_036961964.1
GAGGCACAGAGTTTCAAAAACCAGAGACGCAACATTGCGAGACTTCGTGGAACGTTTACCTAAATTGCAACATTAAAACATCTAAACACATTCCCATGACTGTCATATAAGTTCAAATGAACTAGTCTATGCCTACTGTGACCAGAGACAATATGGGAGTGACTGAGATGAGGTATGGAAAGTGAAACTTAAGGAAAGGGATAGCCTCACTTAGCCAGTCCCATGACTGCTGAAACTCTTCACTAGGAAAGACATCACATCCTAGACAGAGCACAGCACACCATGGGTGTCCAGGGATTTCCCAGTGTTGCAGTGCTGCAGAACAGATGCAGCCAGACACTCTGGATCAGCCGCCAGGgtgcccggcatcagaacattccaggcattcccgtgattggcagatagcaggttgattgaCATGTCAGACACCgcgaacactgggtactgGCTCCAAGGTCAGTGCAGCTTAAGGTGTTTTTGGAGACCTTGGGTGTGCCCAGTCCACTTTGAGCGGTGTCTCACCTCATCTGTGTCTTCCTGTGGCTGTCACCTGCTACTGGCTGAGGCATGCCCCTCCCCCACCAGACCTGCATATCCTGCAGGCCCTGCTACTAGGTTTGGTGTACGGAGAGCTCTGCAGACAGAGGAAGAGCCAAAGAGAGTTCATGGAGGGACCAgtgttggagagggagagggacaagagAGGGACAAGGAGTCTCAACCTGTGTGTGGCCCACGCCTACAGCCAGTGGCAGTGCTACCTGAAAGAATGCCTTGACCTGAACCAACTGCTGTGCCTCCTGAGCCTCAGTGTGCCTGGTTTGGATCAGAGTCATGGAGGGGATTATGATGCTTTTGAGGACCAGGTCTGCAAGTTCTTTAAGGCTCTGAGAGACTGCGACATTGACCCCTTTGTGATTGTAGATGGGGGCTCCGACTACACCGACAAAAAGtttgaaacaaaaaaaaacagagctcTATCAAGGATCAACAGAGCGAAAAGCTTGTCCATGGGGCTTCAGGGGAGCGGTGGTATATTACCAACCCTCATCAAACATGTCTTCAAACAGGTCCTCATCAGCCTGAATGTGCCGTACGCACAGTGCATTTGTGAGGCAGACCAAGATATAGCCTCCCTGGCTCGAAGTTGGAACTGTCCAGTGCTGTCCAATGACAGTGACTTTTATATCTTTGACATCCAGGCAGGATTTCTGCCCACCTCCCATTTTCACTGGCAGAGAGTGTCTATGCAACGCGGGAGCTCTATAAGATACATTCCCTGCAAGCAGTACACCACAACAAGCTTCTGCAGACACTTCAACATCAACAGACAGGTTCTCCCAGTCTTCGCTGCCATGTTAGGAAACGACTACGTCAAGTTGCATAACATGGGTGTTTCCCTCAGGTGGGAAGAATACACGTCAATGGAAGGAAGGTTTGCCCGCTTCGACGGCTTGCTGAATTGGCTGGCCCGCTTCCATGGGCAGAAGGATGCCTTGGACTCCGTGCTCAGGCTCATCAGTCATTGTAACAACAGACAGAAAACAGGTGCTGTCCTCCATGGCCTCTCCCTGGGCATAGAAGAGTACCATCTTCCCCCTAGTTGCCTGGAGCGGTTCTTCAACGATGGAGTGGGACCAGGGCCCGGCCGTCTCCCAGAGCCTCTGAGGGTCCTTCCAGACTGGACCCTGCTGCCATTGATGGAAGGTAGACTTCCCTCCTGCATGGTAGACGTGCTGCTGCTGGGAAGGATGATGCAGGGTGCCCAGGTGGAAGATCCCAGCTTGCCATGTGGGAACAACACCTCTCGGTCCATACGACAGGTACTCTACGGGCTGCTGCTGGGTGGGAGGAGGGCAGACCACAGCCGTCAGAGACCCCCAGTGGATGAAGTGGAGGAGTATTACAGGGAAGGCAAGAGCCTGACCAGCAGCATGGTTGAAGCCATCCTTCCCAGTGCTGCAGAACATATACAGCTAGACACTCTGCATCAGGCTCCAAGGTTAGTGCAGCTTAAGGTGTTTTTGGAGACACTTGGTGTGTCCCAGTCCACTTTGAGCGGTGTCCCGCCTCATCTGCGTCTTCCTGTGGCTGTCACCTGCTACTGGCTGAGGCACGCCCATTCCCCTCCAGAACTCCCTGTCCTGCAGGCCCTGCTACTAGGATTGGTGTATGGAGAGCTctgtagaaagagaaagagccaAAGAGGGTTTATGGAGGGACCAGTGTTGGAGAGGCTGAGAGGGCTGATTCAGAGAGGTAGAAGGAGCCTAGACCTGGGTGTGGCCCACGCCTACAGCCAGTGGCAGTGCTGCCTGAAAGAAAGCCTTCACCTCAACCAACTGCTGTGCTTCCCTCTAGACGAGCCTCAGTGTGCCTGGCTGTACAAGGGCACTCTGGTGCACCAGCTTGTGACCAAACTGAGAGGGGGGTTAACCCCGGATTCTCTCCTGATGGGAGACCTTGGCTCTGgacagctgtatagggccatgCTGGGAGCCATACTCAACTCCCATGATTCTCATGAGGCAGCTGTCATCCCATTTGTGTCTGGGCTGCAGAGGGCCACACCTCCATCCTTGACACAGCCACTGGACGATCTGACGGCCCATCTACACATTCTGGCTCTggaatatgatgatgatgatggtgctgGAGGTGGGAGCAAGGCCAAGTCAGAGGACGATCTGGGTTGGACTTTGGTCTCAGTGCGGACCCGGCACAAGAGCAAGGACAGATTCAACCGAGCTAGGAATCCAGAATTCTCCCGGAAGCAGGGGCGGATCGGCTGGGAATAGGGAGGGACCATTATATAACGGTTTAGATATATAGACGTTCTGCTCAACTCTTCAATGTTTTTATTGTTCTTGTGTGTACCTATTATGACttaatttacattttattagCATGAACTATAATAGAAGTTATGATAAGTTTGACTTTATTTaatatgtttttatttctttGCTCTCTACTGTAAAAACTTATTTTGGTCTTTGAAAATAGCTCTATAAATCCCATTTATTGTTACGATTAtattactgctgctcttgaaaTATTTTATCATCAAAatgaaaaataacatttaaaccAGCTATTCTTGAGAATGATTGGCTATACACACTAAAGTATATCTCTGCTTTGACAGTATATTTTAAATTAAATTCTTATTC
>TU132139
ACTAGGAAAGACATCACATCCTAGACAGAGCACAGCACACCATGGGTGTCCAGGGATTTCCCAGTGTTGCAGTGCTGCAGAACAGATGCAGCCAGACACTCTGGATCAGCCGCCAGGgtgcccggcatcagaacattccaggcattcccgtgattggcagatagcaggttgattgaCATGTCAGACACCgcgaacactgggtactgGCTCCAAGGTCAGTGCAGCTTAAGGTGTTTTTGGAGACCTTGGGTGTGCCCAGTCCACTTTGAGCGGTGTCTCACCTCATCTGTGTCTTCCTGTGGCTGTCACCTGCTACTGGCTGAGGCATGCCCCTCCCCCACCAGACCTGCATATCCTGCAGGCCCTGCTACTAGGTTTGGTGTACGGAGAGCTCTGCAGACAGAGGAAGAGCCAAAGAGAGTTCATGGAGGGACCAgtgttggagagggagagggacaagagAGGGACAAGGAGTCTCAACCTGTGTGTGGCCCACGCCTACAGCCAGTGGCAGTGCTACCTGAAAGAATGCCTTGACCTGAACCAACTGCTGTGCCTCCTGAGCCTCAGTGTGCCTGGTAAGGTGTCCCTTCCTAAATCAACCATAACCTCTAGACCAGTGTTGCTGTCATCCCCTTGGTGTCTGGGCCGCAGAGGGCCACACCTCCATCCTTGACACAGCCACTGGACGATCTGACGGCCCATCTACACATTCTGGCTCTggaatatgatgatgatgatggtgctgGAGGTGGGAGTAAGGCCAAGCCAGAGGACGATCTGGGTTGGACTTTGGTCTCAGTGCTGACCCGGCACAAGAGCAAGGACAGATTCAACCGAGCTCGGAATCCAGAATTCTCCCGGAAGCAGGGGCGGATCGGCTGGGAATAGGGATGGACCGTTATATAACGGTTTAGATATAGAGTCATTCTGCTCAACTCTAACCTTTTTATTGTTCTTATTTGTACTTATTATGACttcatttacatttgtttttagaATTAACTAGCATTAACTATAAAATAGTTTACGAAAGATACAGTCgggc

Function

NR:

description
protein asteroid homolog 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620271.2 False 2938 mRNA 0.50 7 13961020 13976561
XM_036961964.1 False 3173 mRNA 0.50 8 13961020 13976561
TU132139 True 1048 TUCP 0.52 4 13961261 13962812

Neighbor

gene id symbol gene type direction distance location
LOC110535355 LOC106574818 coding upstream 35130 13921452 ~ 13927188 (+)
LOC118944102 LOC106574856 coding upstream 40479 13915738 ~ 13920541 (+)
LOC110520780 LOC106574729 coding upstream 204990 13663839 ~ 13756558 (+)
LOC110520770 LOC106606072 coding upstream 317125 13632935 ~ 13643895 (+)
LOC110513073 prune1 coding upstream 330441 13624633 ~ 13630579 (+)
LOC110534090 LOC106574714 coding downstream 51405 14027966 ~ 14043643 (+)
LOC110535435 LOC106585480 coding downstream 110458 14087019 ~ 14135046 (+)
LOC110513267 LOC106606078 coding downstream 132983 14109544 ~ 14230202 (+)
LOC110535510 slc4a7 coding downstream 263671 14240232 ~ 14316219 (+)
LOC110490457 LOC106605965 coding downstream 362929 14339490 ~ 14343217 (+)
G115129 NA non-coding upstream 14232 13943302 ~ 13946788 (+)
G115075 LOC106574723 non-coding upstream 28575 13905332 ~ 13932445 (+)
G115044 NA non-coding upstream 153055 13807766 ~ 13807965 (+)
G115042 NA non-coding upstream 154279 13806404 ~ 13806741 (+)
G115153 NA non-coding downstream 60679 14037240 ~ 14037747 (+)
G115155 NA non-coding downstream 75095 14051656 ~ 14161240 (+)
G115162 LOC106585541 non-coding downstream 84774 14061335 ~ 14171570 (+)
G115170 LOC106585541 non-coding downstream 89463 14066024 ~ 14175893 (+)
G115086 LOC106585480 non-coding downstream 131740 14108301 ~ 14119096 (+)
LOC110520769 LOC106593286 other upstream 337055 13604304 ~ 13623972 (+)
G114323 NA other upstream 996090 12949360 ~ 12964930 (+)
G114263 NA other upstream 1198193 12762232 ~ 12762827 (+)
G114244 NA other upstream 1239705 12720730 ~ 12721315 (+)
G115190 NA other downstream 165321 14141882 ~ 14144267 (+)
G115189 NA other downstream 257953 14234514 ~ 14236854 (+)
G115289 NA other downstream 429483 14406044 ~ 14407912 (+)
sec61b sc61b other downstream 579894 14556397 ~ 14565113 (+)
stx17 stx17 other downstream 777062 14753455 ~ 14775822 (+)

Expression


Co-expression Network