LOC110490457 (LOC106605965)


Basic Information

Item Value
gene id LOC110490457
gene name LOC106605965
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14339490 ~ 14343217 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962071.1
CTCCCTGACTTTCTTTCTCCTCAGTGCTAAAGGGATACATATATATTTGATTACCTTTAGGATGGTGCAGGCtcaactcttctctctcttctctgtcattaCAGGCACCTTCTCACAACCATGGTCCATGACAGTTCCCCCTGTAGTGAACAGCACCATAGGAGGAGATGTGGTCCTACCCTGCTCCTTCACCCACCCCAAGCAACAAGACTACTCCAAAGGCATCACAGTTCAGTGGATTACCAGACAATTCCATGATACGCCCTTCTTCCAATGCAAGGTGAAAAATGTTACTACGGGTGGAATGAATGAATGCTCAGTTCCAGAGTCATACCAACGCTTCTCAGTCAAAGGAGACCCTAAGCAGAgggatctctctctcctcatcagagATCTGGTGGTCACAGACAATGGAGTATACTTCTGCAGAGTAGAGCTGGACCCTTACTGGGGTGATGGGAAGTGGCAGACTGCCAGCGGCACACAGCTCAATATCATTGCTAAGGCCCAGATTCTCAGCCTGTCTTGGGTAGAGGCGTCCCTCGGACCAGGCAACGGGAGCCTCAGGTGTGTAGTTGAGGGGAACCCCCCATCCACCATCACCTGGTTCTCCTCCTCTAAGGGCAACATAGACCCAGGTGTCAGCACCATAGGAACCCACCCATTTCAGTGGATCAGTTCAATCCCCTACTTCACCCAGGAAGTGTACACCTGCAGGGCAGAGAACAGCCTGGGGAGGGCAGAGAGACTGTTCCCCCCTGGACCCACTGCGCTGACCGTAgccctctctgtgtgtggggtCCTGCTTCTGCTGCTGCTCCTTGGCGTGGCTTTATTTTACCTGAGAAAAAGAGGATACCTGAGATTCTGCAATTCAGAAAAGATTAAGCAGCAATCTGTGTTGTGCACAGATCCTGCTATAGCTATGGTCAGTGAATCCTCTATCTACGCCAATGTCTCAGAAATGGAAAGCCCACAGTCATTGTATAAACATAATTCACCAGAAGATGGCGACATGGAGCTAAATCTGGTATACTCAGACGTTCAACTGAACACCACCACTCAATCACCCCAAAGAAGCTCTCGTATCCCCATACCAGATGAAGGTGTCCACTATGCTATTGTGAAGCTAGGGTGAACTGCCGAGGCACAGCAGAGAGAATGTAACTCTGGAGGTCTGTCATAATGAAACTGACCTCCCTCATTCTGACAGACATTTTTCAAAAGTAATCAACGAGAGTTTAGCAGTCAATCTTATTGAAATTGTTCACAACATTGGGGCAACTTGGTAGATTCCGTTTTTATATTGTTATTCTTATGGAGGTGCAATTACATAATTGCCCTACAAGTGTTATTGTAACTGTAGTGTTATTGTAACTGTAGTGTTATTGTAACTGTAGTTTTATTGTAACTGTAGTGTTATTGTAACTGTAGTGTTATTGTAACTGTAGTTTTATTGTAACTGTAGTGTTATTGTAACTGTAGTGTTATTGTAACTGTAGTGTTATTGTAACTGTAGTGTTATTGTAACTATAGTGTTATTGTAACTGTAGTGTTATTGTAATTGTCAAAAATGTTACTCAATAACTATTGTTATTGTTCCTGAGCGCCATTACATCATTATACTTCTGGGTTTCCTTTCAAAGAAGTGAAGCGTTCCTTTTAAACACACGTCACATGAACCCAAAGAAGAATTCCAGCGCGGTCATTCGCCTCAACCACCACAGAACCAGCTGATGCTATCTGGGCAAAACTTCAGTGTATCTCTGGTTGAGTGTGGTCATCCACCAGCTCTGCAAGGAACTCTGTCAGCGAACTACTGAAGGGTTTTCTCATATTTGTAAGGGGTGTGTACtagcggcagagaagtcagacgcaggagagcaagaACTGTGTTTCCAAACGGcgcagttaaaaaaaaattaaacgacCGGAAAACAGAACAATCAAATAATGGGTACATAACCCGAATCACACCAGGACAgccgtgcacaagcacttacaatacacaatctgacaaggacatgagggggaacagagggttaaatacacaacatgta

Function

NR:

description
sialic acid-binding Ig-like lectin 15

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962071.1 True 2060 mRNA 0.45 8 14339490 14343217

Neighbor

gene id symbol gene type direction distance location
LOC110535510 slc4a7 coding upstream 23271 14240232 ~ 14316219 (+)
LOC110513267 LOC106606078 coding upstream 109288 14109544 ~ 14230202 (+)
LOC110535435 LOC106585480 coding upstream 204444 14087019 ~ 14135046 (+)
LOC110534090 LOC106574714 coding upstream 295847 14027966 ~ 14043643 (+)
LOC110535330 LOC106574784 coding upstream 362929 13961020 ~ 13976561 (+)
LOC118936243 cklf7 coding downstream 1674 14344891 ~ 14356726 (+)
trnat-ugu NA coding downstream 65449 14408666 ~ 14408738 (+)
galnt1 galnt1 coding downstream 87684 14430901 ~ 14497781 (+)
sec61b sc61b coding downstream 213180 14556397 ~ 14565113 (+)
nr4a3 nr4a3 coding downstream 366705 14709922 ~ 14744937 (+)
G115263 NA non-coding upstream 3535 14335711 ~ 14335955 (+)
G115262 NA non-coding upstream 4093 14335157 ~ 14335397 (+)
G115081 NA non-coding upstream 21480 14317548 ~ 14318010 (+)
G115252 NA non-coding upstream 42102 14292759 ~ 14297388 (+)
G115216 LOC106585480 non-coding upstream 136548 14199253 ~ 14202942 (+)
G115077 NA non-coding downstream 20005 14363222 ~ 14364303 (+)
G115083 NA non-coding downstream 21422 14364639 ~ 14366242 (+)
G115271 NA non-coding downstream 32404 14375621 ~ 14375857 (+)
G115274 NA non-coding downstream 38396 14381613 ~ 14381824 (+)
G115276 NA non-coding downstream 43893 14387110 ~ 14387543 (+)
G115189 NA other upstream 102636 14234514 ~ 14236854 (+)
G115190 NA other upstream 195223 14141882 ~ 14144267 (+)
LOC110520780 LOC106574729 other upstream 630116 13663839 ~ 13756558 (+)
LOC110520769 LOC106593286 other upstream 715525 13604304 ~ 13623972 (+)
G115289 NA other downstream 62827 14406044 ~ 14407912 (+)
stx17 stx17 other downstream 410406 14753455 ~ 14775822 (+)
si:ch211-197h24.6 LOC106574428 other downstream 517503 14860649 ~ 14867713 (+)
tmem67 LOC106606053 other downstream 534041 14870805 ~ 14882237 (+)

Expression


Co-expression Network