sec61b (sc61b)


Basic Information

Item Value
gene id sec61b
gene name sc61b
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14556397 ~ 14565113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962200.1
TAGGGCACCTAAAATGGTCCTTCGTTCTGTAATCGTGTCCTTTTTAGACAAGCGTCATCTTTCTTGGATTCCTTCTGAATTTGCAGCGATTTGTGTACAGCACTGCTGCCCTTTTGACGTGGACTTCAGTTCGAAGAACAGTTGAAGTTTTCTTCTTTAGTTGAAATCCAAAGTACAACTTAAAATGCCTGGACCAGCATCAAGTGCAACTAATGTCGGTGCAGGGAGCCGATCCCCCAGCAAGACAGTGGCCCCCCGCGCAGCAGGATCCACAGTCCGACAGAGGAAAGCAACGAGCAGTGGCACACGCAGTGCAGGCAGGACCACAGCGTCAGCGGGCGGCACAGGGGGCATGTGGCGCTTCTACACTGAGGACTCACCAGGACTCAAAGTAGGTCCAGTACCAGTGCTGGTGATGAGTTTGCTGTTCATCGCGTCGGTCTTCATGCTGCACATCTGGGGGAAGTACACCCGCTCCTAAACCCCGCCCCATGACCCTTCACCCTCAATCCCTGACCCTGCGGCGCAGCTTCTTAACACATCAGACCTGGACCAAACAACCAACCAACCTGAATCCCCAAACAACACTGCTCGCCTGTCCTGGCGGGCGGTACAGACCCAATCTGTCTGGTGTTCTCTTAGAGCAGCAGTCTAGTGTCCAACTCAAACTGAACTGCAGACCACCAGTGTGTTGCCCTTGAACACAGATCATCTAGGACTGAATCCTGACATGAGACTCATCTCCTACTGGCTGTTGTAGGTTCTGTTGATGACAATGGGTGATTCCTCTCCAGTAAGGATCAGGCACCTAGTCCCCTCATCAGGACGTCAGTAAGCATCTATATATTTCAGCCTGAATTGGAACCTGTAGATGTTTTGTTAACATCATTTGGACAACATTTTTATTGTGATATTGTACAATAAATGGACTCAAACAGAA
>TU132480
CTTTCTTGGATTCCTTCTGAATTTGCAGCGATTTGTGTACAGCACTGCTGCCCTTTTGACGTGGACTTCAGTTCGAAGAACAGTTGAAGTTTTCTTCTTTAGTTGAAATCCAAAGTACAACTTAAAATGCCTGGACCAGCATCAAGTGCAACTAATGTCGGTGCAGGGAGCCGATCCCCCAGCAAGACAGTGGCCCCCCGCGCAGCAGGATCCACAGTCCGACAGAGGAAAGCAACGAGCAGTGGCACACGCAGTGCAGGCAGGACCACAGCGTCAGCGGGCGGCACAGGGGGCATGTGGCGCTTCTACACTGAGGACTCACCAGGACTCAAAGTAGGTCCAGTACCAGTGCTGGTGATGAGTTTGCTGTTCATCGCGTCGGTCTTCATGCTGCACATCTGGGGGAAGTACACCCGCTCCTAAACCCCGCCCCATGACCCTTCACCCTCAATCCCTGACCCTGCGGCGCAGCTTCTTAACACATCAGACCTGGACCAAACAACCAACCAACCTGAATCCCCAAACAACACTGCTCGCCTGTCCTGGCGGGCGGTACAGACCCAATCTGTCTGGTGTTCTCTTAGAGCAGCAGTCTAGTGTCCAACTCAAACTGAACTGCAGACCACCAGTGTGTTGCCCTTGAACACAGATCATCTAGGACTGAATCCTGACATGAGACTCATCTCCTACTGGCTGTTGTAGGTTCTGTTGATGACAATGGGTGATTCCTCTCCAGTAAGGATCAGGCACCTAGTCCCCTCATCAGGACGTCAGTAAGCATCTATATATTTCAGCCTGAATTGGAACCTGTAGATGTTTTGTTAACATCATTTGGACAACATTTTTATTGTGATATTGTACAATAAATGGACTCAAACAGAA

Function

NR:

description
transport protein Sec61 subunit beta

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962200.1 False 940 mRNA 0.50 4 14556397 14565113
TU132480 True 882 TUCP 0.50 4 14556455 14565113

Neighbor

gene id symbol gene type direction distance location
galnt1 galnt1 coding upstream 58616 14430901 ~ 14497781 (+)
trnat-ugu NA coding upstream 147659 14408666 ~ 14408738 (+)
LOC118936243 cklf7 coding upstream 199671 14344891 ~ 14356726 (+)
LOC110490457 LOC106605965 coding upstream 213180 14339490 ~ 14343217 (+)
LOC110535510 slc4a7 coding upstream 240178 14240232 ~ 14316219 (+)
nr4a3 nr4a3 coding downstream 144809 14709922 ~ 14744937 (+)
stx17 stx17 coding downstream 188342 14753455 ~ 14775822 (+)
LOC110535632 invs coding downstream 229089 14794202 ~ 14837595 (+)
si:ch211-197h24.6 LOC106574428 coding downstream 295536 14860649 ~ 14867713 (+)
tmem67 LOC106606053 coding downstream 305692 14870805 ~ 14882237 (+)
G115344 NA non-coding upstream 22763 14533357 ~ 14533634 (+)
G115343 NA non-coding upstream 29204 14526823 ~ 14527193 (+)
G115342 LOC106595499 non-coding upstream 29882 14526037 ~ 14526515 (+)
G115331 LOC106573619 non-coding upstream 48897 14506661 ~ 14507500 (+)
G115330 NA non-coding upstream 50859 14504666 ~ 14505538 (+)
G115361 NA non-coding downstream 12795 14577908 ~ 14578156 (+)
G115363 NA non-coding downstream 19336 14584449 ~ 14610652 (+)
G115362 NA non-coding downstream 19644 14584757 ~ 14585497 (+)
G115365 NA non-coding downstream 38133 14603246 ~ 14617366 (+)
G115371 NA non-coding downstream 74131 14639244 ~ 14639618 (+)
G115289 NA other upstream 148485 14406044 ~ 14407912 (+)
G115189 NA other upstream 319543 14234514 ~ 14236854 (+)
G115190 NA other upstream 412130 14141882 ~ 14144267 (+)
LOC110535330 LOC106574784 other upstream 593585 13961020 ~ 13976561 (+)
LOC110520780 LOC106574729 other upstream 847023 13663839 ~ 13756558 (+)
esrp1 LOC106605950 other downstream 440480 15005556 ~ 15026595 (+)
G115854 NA other downstream 465326 15030439 ~ 15031445 (+)

Expression


Co-expression Network