LOC110507970 (LOC106606114)


Basic Information

Item Value
gene id LOC110507970
gene name LOC106606114
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 15160172 ~ 15170433 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588400.2
GCTACTGCAGCTTGCGGACTGGAAACCCCCTGAAAGATCAGCGTTGAAAGAAACGAAAGTTGAGCCTAACTATTGATGCTGTTCAGAGTGGTGCGGAggaaaaaataaacacaaaagaACAGGAAAAGAATAAGACAAAGTGAGCCTGCTTTTCAAGACACTGGTCCTGCTTCAACAGTGATCCTGCGTCAAGTAAAGCTTAGCAGTGTTTAGCAGTCTTCAACTTGACCACAACGCTGAAGTGAGAGCAGAACATGGACGTGGTTGTGCGCCATAACCACAGAGGACACCAGGAGTTTGCTGTCCAGGCCGAGCACTTGAAACTGCCGTACCTAGGACTGAGACTGAAAGCTCAGGGCATTCACAACGAGTACCTCTTCAAAGACAACATCCCAAAATACCCAAGGCCAGAGTTCTGGGTTTCCCAGCTCAGACACGACACGAATGGTGGCGGGCTATTTGGCATAGCCGTCGAAAGCGAAGGGGGGTTCTGTGCTAGGGACCGAGAAGAGGGGCCAGAGGACCCAGAAGAGGGGCCAGAGGGTTTGGACCTGCTGTGGTGGAGCTTGTCTTTGGGAGCAGAGGAGATGGCCTCGGCTGAACAACGTCTGCTCCAGACCAGGTACCCTGACAGGACAGAGGAGCAGGCCAGGGAGCAGAAATCCTTCCTGCAGAGGTTCGCCACCTCACCTGCCTTCCTGGACACCTCTCGGCTGGGCTCCTACCGCTTCACCTACCCCCTGGAGGAGCTGCTTAAGAGATACCGGGAACAGCTATGCGTTGGACACGAGCCAATCCTGCGTGTGTATGAGACAGTCCTGTACAAACAGGAGGTGATGTACTCAGTGCTAGTCCACAGTCACTACAACAACGACCTCTTTGAGAAGTACCCTCTCCTCCAGGACAATGACGATGGAGTCTGCGCTTACAGAGATGGACAAATCATTTGGAGACCCGAGGCCATGTGTGAGACACACAGCTTCAAACTGGTGCCAAAGCCCTACCAGAACCAGGATGTAGCCCACCTGATCCCTGATCCACAGAAACACCAGTTCTACGTTTGGGACAACATTGCTGTAGCGTTCCACATGGACGGTTCACAGATGTTGAACTTCGATATGTACAATTTGAGAGGCCATCTGAGATTCTGTGAGCCAGGAACGCCACCAATTTCCCCCATCTGTGAGTTCACCACATACGAGGAGGCCAAAGACATGGTAGACTGCTATTGgccttactaccatacccccctGTTCTGATAAACTTACTACTACACCCCCCTGTTCTGATAAACTTACTACTACACCCCCCTGTTCTGATAAACTTACTACTACACCCCCCTGTTCTGATAAACTTACTACTACACCCCCCTGTTCTTATTTCTCCTATTTCTTGATTTGTTGTTTGGATTGTTTTCATGATTGTGTATTTGGATTGTATTTGCGAGAcgttctactgcactgttggagctagtaacacaatctTTTCCATGCACCTGCCATAacacctgcaaatctgtgtacgtgaccaataaactttgatttgatgatgaTTTTGAAGTTAGGTAAAGTTAAAATTATTATTCTTTTAACATGCTTCACTGGTTTAAACCCAGTAAGCTACATGTGTTTTTGTTAGTCAGCATTAGTACATTCTTTGTCAGGTTTGAGAACATATtgcttttgttatttttgtgcCTTTGCTCTACAAGGAGCTAAAAGGACTCAAGTATTTTTTGTTAAGTTAGAATTTTTAAGAAAATAAATCTTCTACATTGGGACTAAA

Function

NR:

description
uncharacterized protein LOC110507970

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588400.2 True 1785 mRNA 0.47 5 15160172 15170433

Neighbor

gene id symbol gene type direction distance location
LOC110508003 LOC106605954 coding upstream 51692 15094896 ~ 15108480 (+)
LOC110520775 LOC106605953 coding upstream 68819 15079627 ~ 15091353 (+)
LOC110533650 LOC106592818 coding upstream 83553 15068668 ~ 15076619 (+)
esrp1 LOC106605950 coding upstream 133577 15005556 ~ 15026595 (+)
rnf41l LOC106570746 coding upstream 179249 14974341 ~ 14981270 (+)
LOC110535768 fam171a1 coding downstream 86836 15257269 ~ 15311917 (+)
LOC110535774 LOC106576081 coding downstream 145167 15315600 ~ 15326000 (+)
LOC110535811 acbd7 coding downstream 159139 15329572 ~ 15336358 (+)
LOC110535783 LOC106606004 coding downstream 185415 15355848 ~ 15368210 (+)
LOC110534183 LOC106576069 coding downstream 204204 15374637 ~ 15400616 (+)
G115890 NA non-coding upstream 39018 15120928 ~ 15121154 (+)
G115888 NA non-coding upstream 41418 15118537 ~ 15118754 (+)
G115887 NA non-coding upstream 43069 15116901 ~ 15117103 (+)
G115886 NA non-coding upstream 44436 15115504 ~ 15115736 (+)
G115884 NA non-coding upstream 47164 15112799 ~ 15113008 (+)
G115928 NA non-coding downstream 29922 15200355 ~ 15202866 (+)
G115924 NA non-coding downstream 34990 15205423 ~ 15253684 (+)
G115934 NA non-coding downstream 54634 15225067 ~ 15227567 (+)
G115936 NA non-coding downstream 76205 15246638 ~ 15249138 (+)
G115937 NA non-coding downstream 79384 15249817 ~ 15254203 (+)
G115854 NA other upstream 128727 15030439 ~ 15031445 (+)
tmem67 LOC106606053 other upstream 281497 14870805 ~ 14882237 (+)
si:ch211-197h24.6 LOC106574428 other upstream 294889 14860649 ~ 14867713 (+)
G116207 NA other downstream 100769 15271202 ~ 15271609 (+)
G116224 NA other downstream 166997 15337430 ~ 15337702 (+)
LOC110535842 LOC106605985 other downstream 280035 15448845 ~ 15451856 (+)

Expression


Co-expression Network