LOC110535768 (fam171a1)


Basic Information

Item Value
gene id LOC110535768
gene name fam171a1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 15257269 ~ 15311917 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938812.1
TTAACTTGCGGTGGTCAGACAACCACTTCAGTGAGTCGCCTGGAGATGGCGGTCAAACCCCACAAATGATTCTGCTAGGCGCCTGTTGGGGCAGCGTCTGGTGTCGGAATAGTTAACGTGGGGCCGCCCTGGCTTCAGtgactttctttattttttaagaaaaaataagAACCGACTGAGCAGCAGGAGGGGTGGGATGCAGAACTGAACAGGACATACTGAAGGAGAAAATAGAGGGAACGCTAATGCTACAAAATATGGAGTCTTGCCCGATGTACATGTGTGTGGTTTACAATACATTGATGTAGCCAGtcaatattttatatttatttgattttttttgtgtgtgtgtgacatctgcAATGACGAGGGTCGGGGTTTTGAGCAGGACCGCAGCGATTGTGCTCTGTCTTTTGGGATGCAATGTGTGGAAAGCGGTAACCAAAACCCTGCAAGATGACAACGCTCTAAAAGagGTGACTCTGAAGGTTCACCTGAGTGATGCCAGCACCCACCAGCCCCTGGGCGGAGCCACCATCGAGCTCTTCGCCAACCACACCCCTGTAACCACAGAGACCTCTGCTCTCGACGGCAATGCCTACCTGCGTTTTCCCTACCGCCTTGGAACCCTGCTAGTTGTCACAGCAACCAGACAGGGCTACGTGCCAAATTCCGCCCCCTGGAGACCCACCAGACTGCCCGtgtttTCCTCTCTCAGTCTGGAGCTGCTACCAGAGAGAGCTGCCACTCTGATGGTGTATGAAGACCTGATACACATTAACTCTGGATcccaaggATCGAGGGGTCAGTCCTGGGTTCAGTTCCAGCGTCGAGCCCTGAGCCTCCCTCCCAACTCGTCCTACAGCAATCTCACTGCCCTGCTGACTGTGGCCAATAACCCCAGCCACATCCAGCACTTCCCCTACCTACAGGGCCTGGGGGGCAACGGAACAGGAAGTGAGCGTAGGTTTGAGCTGACTCCAGtggcggccatctctgtccacCTATTGGCCAGCGAGGGGGTGGAGCTCCAGGTGAATGGTCCAATCagcatctccatctctctaccggCCAATAGCGGCCTGAAGGAGAACCAACACATCCCAGCCTGGAGGTTCGATCCCAGTCTAggGGCCTGGTTGAAGAGCAGTCTGGGCTATGTCCAGAGGGAGGGAGACCAGCTCAGCCTAACCTACATCGCCCCTCAGCTGGGATACTGGGTGGCTGCCATGTCCCCACTAGACACAGGTCCGGTGGTGGCAAAGGACATCAGTATGTACCACACATTCTTCCTATTGGCCATACTGGGAGGCATGGCTGTCATCCTCCTCTGCCTGCTCTgcctactactgtactactgcaggCGTGGTTGTGTGAAGCCTCGTCTGTCCCAGCGGAAGCTGACTCTGTCGTCTGGTCTGGAGGGCAGTAAGAGAGATCAGTCCACCTCCATGTCCCACCTCATCAGCAGCGAGGTTCATTTGGAGCTGGTCTCTACGACAGCAGAACCCGACATGACCACGCCCATGCTAAAACCCTCCTCCTATGATCGCCATGACCTGGTCTCCCATGGCAACCACAGTCGCATGTCGCTAGGAAACCACAGCCGAAGTCGTCATGGCTCGTCGCTAGGCAACCTGACGCCGCGCAGCAGAGACTACCGTCAGTCTGTGGAGACGTTCCCGTTTAAGTCAGCCCTCTCCGCCGGGACGGATGCCGGCTACCGCCAATCATACACCTCCATCTGCTCATCCATCAATCAGCTCCCAGATAGACTTTCCTCCTCAAATCAGGTGCATGCGTCAGCAAGTCAATTGAGTGGTGTTGGGGAGGGCGGGACTAGTGTGCGTGAGGCTACCTCGCCCTGCTCCCCACCTGTCTCCCCTATCAGAGGGGAGGGGTGTGAGCGCAGACCCCCAGACTACCTCCTGTCCCGGTCTGTGGACCACCTGggctccctgcccctctccctccccaggcCGGGCCAGCTGCTGTGTTGTGGCTCCGTGGACCTGCTGAGTGGAGGAGACGGTTACCCCAGGAGGATCCGGCCCACCCTGGTGATCCCAGCCCACTACATGCGCCTGCCGGGGGAGCACCCGCTGTGTGGCCAGGCCCTGTTCTTACAGACTGACCAGCAGAGTGACCTGGAGACCATCCAGGCTGAGCTCAACGCCTCACACCCCCAGCAGCCCCTGGGGCAAACACACGCCGATTATGCTATCGCCTCAGCCAACCAGGGACAAGGAGAGGGGCAAGGGGAGTGGAGCAGCCTATCAGAGTCCCTGTCTATCCCGACAGCACTTGGGGAGGCAGGTATTATGCAAATGAATGGCGAGGACACGCTATTGGCTGAGAGGAAACTGATGGAACTGCGGGGAGGGAAGCCCCTCACGCACCCGCGCGCCTGGTTCGTCTCATTGGACGGTCGGTCTAACGCCATCAGACACTCTTACATAGACTTGCAGCGGGCTGGGCAAGCCAAGGGGAATCCAGGTGGAGGAGGTAGCCATGGTAACAACAGTGGTGGTAGACATGTCAACGGAAACGACGCAAGTCTGGACTCCGGGGTGGACCTGAATGAGCCCAGAGCAGGgcggagggggagggaggtagagaggaaggtaggagagagggaaagagagaaagacagagagagggggaggacaaaGAGCGGCCCTCCTGCCATGGCCTACACCCAGCTGGTATATGTGGATGACCTGGAGGGGGAGACTCCTGAGTGTAGCCCCCAGGACAGCCCTTTAGGTCCAGGGTTGCAGAACACACAGGGACATCAAcaagtagaggaagaggaggaggacagaggagaggaagaggaacacagaggagaggggatgatacAGGAAGAGGctccttcacccctctcctccccctcctcctcctcctcctctccacccccacTCACAGAGACAAAAGGCGTTGTCTTCAGGACTGAGCATGACCAGACGGCCCTATTGTCTGTTGCCCCTGACGACCacggagaagaggagaagaagagccccTGGCAGAAGCGGGAGGAGCGCCCCCTACTGGCAGTCTTTAACCTCAAATGACCTTACTTCCCCACCCACCACCCCGCCCCAGAGTGACATGAAGAAGGAAGTACTTCTGCACTGGGAGCTAAATGGAACTGTCAGTGAATGGAAACGATTGGAACAGTTGGAACTCCATACATTCTAATGTCTAATCCTTCCTGTGTATCATCATAGCCCCACACTACATGGACAGGCCACTGACTAGACATGCCATAGAGACTTTGTCTGAGTGATACAGATGAACTCCTGAACTAAAAACAAACTTGACAACGCCAGAGAACATGTAATGCACAACTGCTATGCCTTTAGTAAATGAGCTGTGTCAGCAAAAAGGGGCTGTGGAATAAAGTAGAGACAGACAATGTGTGTTTCAATACTTAGCAGCAGCCTCCTTTCCTCAGTCTTATCTGCTTCAGTCCACTGATCTGAAAAGCATCGGACAAGTAAAAGCAATATGGCGGATGTCTACTGGCAGGTCTAGGTAGAAGGAGTAGTAGTGTTTTCAGATCAGTAACTAGGACAGGATATACATACAGCAGGAAAGGAAGCTACTCTAATGTATAATGCTGCACAGATCTACGATCAGTTTTCCCCCCACAGGTCTTAatctgggcggcaggtagcctagcaggtaGAGCGGTGGGCCAGTAACGCAAAGatcgctggttcgaatacccaagCCAAGAtgttgaaaaatctgtcgatgtgcccttgagcaaggcacttaaccctgatttgctccaggggcgccgtactactatggctgcaTCTATCCAGTGTGACACtaaaacatattttgttttgttatttttttaggTTTCCATTTTCCAACGTTAGGGTACCTtagattggtgtgtgtgtaacttCAGTTTCCCATCCACACGACTGGTGAATCAGATAATGGGATACAGCCCCCTCTGTTGGTGACTGTTGATATTGCAGCACTCTACCAGTGAGGTTTTATATGAAGGTTTTGTGTGTTGAACCACTGACTTCGGCTCTGAACGGCTGGCTATGCATCACTTTTATACAGTTGCTTGAGATGGCTTGTTTTGTAATTTTAAGTACTCTGTGATTTTAGTTGCCAAACTATTTTACTCAAATACGTTTATGCTATTTTCTACTCAGATATGTTTTATCGTTTTTTTTCCCTTACTGTAAGTACAGAGTTTTAACAGACACACACCCAAGCCTTTTCTCTGAAACCAAACCGCATCCTGACGTTTGGAAACCACTATAATCGACTTCCTCGTTTTccaagtgcctttgaacaagtTGACTCGTACACATTAGTTGATCAGTTCAGCTAGCTATttatttctcctctcccctgtttaGCTCTAACCCTccactacctcatctctctctcctccctctgtccctggcAGACCATGCAgcaaccccctctctcctctcctccctctgtccctggcAGACCATGC

Function

symbol description
fam171a1 Predicted to be involved in regulation of cell shape and stress fiber assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human FAM171A1 (family with sequence similarity 171 member A1).

NR:

description
protein FAM171A1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938812.1 True 4498 mRNA 0.53 9 15257269 15311917

Neighbor

gene id symbol gene type direction distance location
LOC110507970 LOC106606114 coding upstream 86836 15160172 ~ 15170433 (+)
LOC110508003 LOC106605954 coding upstream 148789 15094896 ~ 15108480 (+)
LOC110520775 LOC106605953 coding upstream 165916 15079627 ~ 15091353 (+)
LOC110533650 LOC106592818 coding upstream 180650 15068668 ~ 15076619 (+)
esrp1 LOC106605950 coding upstream 230674 15005556 ~ 15026595 (+)
LOC110535774 LOC106576081 coding downstream 3683 15315600 ~ 15326000 (+)
LOC110535811 acbd7 coding downstream 17655 15329572 ~ 15336358 (+)
LOC110535783 LOC106606004 coding downstream 43931 15355848 ~ 15368210 (+)
LOC110534183 LOC106576069 coding downstream 62720 15374637 ~ 15400616 (+)
rundc3b LOC106576055 coding downstream 125975 15437892 ~ 15448698 (+)
G115937 NA non-coding upstream 3066 15249817 ~ 15254203 (+)
G115924 NA non-coding upstream 3585 15205423 ~ 15253684 (+)
G115936 NA non-coding upstream 8131 15246638 ~ 15249138 (+)
G115934 NA non-coding upstream 29702 15225067 ~ 15227567 (+)
G115928 NA non-coding upstream 54403 15200355 ~ 15202866 (+)
G116190 NA non-coding downstream 929 15312846 ~ 15313608 (+)
G116239 NA non-coding downstream 85929 15397846 ~ 15398916 (+)
G116252 NA non-coding downstream 98978 15410895 ~ 15413673 (+)
G115854 NA other upstream 225824 15030439 ~ 15031445 (+)
tmem67 LOC106606053 other upstream 378594 14870805 ~ 14882237 (+)
si:ch211-197h24.6 LOC106574428 other upstream 391986 14860649 ~ 14867713 (+)
G116224 NA other downstream 25513 15337430 ~ 15337702 (+)
LOC110535842 LOC106605985 other downstream 138551 15448845 ~ 15451856 (+)
G117048 NA other downstream 871769 16182890 ~ 16185784 (+)

Expression


Co-expression Network