rundc3b (LOC106576055)


Basic Information

Item Value
gene id rundc3b
gene name LOC106576055
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 15437892 ~ 15448698 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621177.2
ACGTTGACTTTCAACAAACGAGCGAGCGTGCTGGAGTGACGCGGATAGAGCCCGCGGGCGGTGGCGTGCACTGTTGAACCCAACCTGCTGATTTAAAAGAAACAGGGACAGCAAATACTGCGCACCTACACTGGGGAGATACGACTAACTGTGGCGAGGATGGCGTCACGTAGCCTGGGGCTGCATGTAGCTCGCAAACAGGACGCTGCCAGAAGCGGAGCTGTGGAGAGGAGGAATCTACTGACTGTCTGCAGgttttCAGTGAAGACGTTGCTTGACCGCTCCTGTTTAGACACGATAGACGACTCCTCTCCGGAGTTCACCAACTTCGTCTCCATCCTGGAACAGATCCTCAGTCACAGACTCAAAGgtCAGACTACGTGGTTTGGTTATGAGACTCATCGTAGTTTCTGGGATTATGTGAAAGCAGCCTGCAGTAAAGTCTCTCCCAACTGCATCCACAGCATTGAGAGCATGGAGAATGTCCGCTCCTCCAGAGctaagGGTCGGGCGTGGATCAGGCTGGTGCTGATGGAGAAGAGGCTGTCTGAGTACATCTCCTCCGCCCTGAGGGACTTCAAAACCACCAGGAAATGGTATGAGGATGGGGCCATCATGCTAGGTGAGGAGGCGGGGCTGCTAGCAGATACACTCATTGGTCTCAACACCATTGACTTCAGCTTCTGTCTGAAAGGGGAGGGGCTGAATGGAAGCTGCCCAGCGGTGATTGACTATACGCCTTATCTGAAGTCGATTCAGAGAGAGAACAGCATCAGCAGTGATGAGGAGTTGAGGACCCTGGGGAGCAGCGGCAGCGAGAACACCACCCCTGAAAAGATGGCCGCCAGCACTGCGGAGGCCATCTTAACCGAGCAGAGCAGCTGGGTCTGCAGGTGTAAACGACTCGAGCAGAAATACCGCATGGCACTGGAACAGAAGtgttatcTGGAAGAGATGGTTCGTCTGAGAGAGGCCCAGCTGTCTCAAGTGATTCCTCAGAACAAAGCTCTTCAGCAGAGactaacagacacacacctctcacacacactggagaagGAACAACTGGAATACATCGTACTGGAGCTTCAGGACCAACTGAAGAATTTCCAGAGTCTAGAGCAGCTGTCCCAGACCTCTCTGGAGccctcacacacactcaacctGGACACTAGACCAGCCAGCTCACACTGGCAccaccatgGGAAGGAGGACACCCCCTCTCTGATAGGTCTGTGTGGGTCTCTGCAGTCAGTAGCCAGCAATAAGTCACTGGCCAGCCTGAAGTCCAGTGAGTGTCTAGCCAGCCCCACCACAGAGGTGACCAGTCCTGACCTCACCCATGTCCTAGAACCAGAGACCAAGAGACCCAGCACATGGTTTGGAGAAAGAGAGCCAGATTTGGACCCTGGAATTGGAACGCAGCCTTTTTGAATTGAAGAAAGAACTCATGGCTCAACGCATGGGAGCCGCAGTCAATCATTTGGAATTTACAACCCGGACTGACCCTGGAACCAGCGCTCCAGTAGTCAGTCCTTCAATGTAAGCGCAGAGCCGTTGGAAAAACCAGGACTGTATTGACCAGGAGCGGCCTCATGTTTATTTATTAGTTTGTTGTATATCTGCACTGATGGGAAAACAACTGCATAGTTGAAAGCCAGTTCCGGGTAGGTATGCTGTAGGTATACTGTTATAACCTATCTTATGTGTTCAGATCACTGCAGACCAAGGAGAACGTCACTTGACACTAGTGGGATGCAGACCTTTTGTGTCACTTAAAGGACTCCTCATGATGTAAACATGCTCCGCATCCCAGAGATTGACAACTTGAGGAATTGCTTTCTTTAGGATTTATTTGGGGATGGGTAAGGAGTGTTAGGGTTTGTTGTTTCCCAACAGTGTTAAAGCCTGTAGACTAGTGGTTCTGTTCATGCCTCATCAACTTGCAGGTGTTGTTGTCCTGTTACCTTGGCAACTTAAGTGAGCTCTACTATAGATGGCCATGGTGGGTCTGTCTCAGCGGCCAAAGAAATACACCTCAAAGAACGGACATATTTAGGTATTGTATTCCTGCCAGAGGACTGGACTATCCTCATTATTTAAGTCTTTGGTGTAATCATGCTTCCATGTTGGAAGGGCCTTAAAATATCTAGAGGAGAACAGTGTTGCTTTTATGTCTTCTGTTTCTACAGTCAATCCTCTGTGGTACCTGACTTGTAGCCATAATCATATTATTGAATGTATCttataaactatcaaaataaagtcgcacactccatatataaactcccagtaatttattggaagaaggcacagtgaagccGAAACATTGGTaaatacccaataaattactggagGTTTAAATATGGAGTGTGCGACTTTATTTTGATTATTTgccattagtcagcacctccacacacactTCTGGGTGTGCACCAGTgaatgcttttttttttattttattttttaattgagtATCATCCACAATCTGTTTTGGATTTAACCACAGTGTTATCTTTATGCGTCAAAGGGTTTGTGTTCTCAGGAAATGTTTCCTGTCCAACAGGGTTAGGTTGAACCGTTTGGTTAGGTTGAACATGATAGTCTGTATTGGGGTTGCATGTTCTGTCTGACTGCGTTGATTTATTTTGATCAGAGGCATGTGGGGAAAGTGTTCAGGGTGTGTTCTgtgtctgtcactctctcacacacacaaacacagttaatTGTATTGCGATATTGCACATTGATTTTATtactttgatttatttattttctcctgCTATTTTGAATAAACTACTGTACTAAACA
>TU133653
agtATCATCCACAATCTGTTTTGGATTTAACCACAGTGTTATCTTTATGCGTCAAAGGGTTTGTGTTCTCAGGAAATGTTTCCTGTCCAACAGGGTTAGGTTGAACCGTTTGGTTAGGTTGAACATGATAGTCTGTATTGGGGTTGCATGTTCTGTCTGACTGCGTTGATTTATTTTGATCAGAGGCATGTGGGGAAAGTGTTCAGGGTGTGTTCTgtgtctgtcactctctcacacacacaaacacagttaatTGTATTGCGATATTGCACATTGATTTTATtactttgatttatttattttctcctgCTATTTTGAATAAACTACTGTACTAAACATATTTAGTTTTGTTTGAATTATATTCTGTACCAATGTGTATGTTTAGTACAGTATGTTCATTCCCCATGTATACACATAGATCTTCATGTTTTACCCCTACCATACCCCTGGCGTTAGAGCGGGATGTAACGTTTAACCCAGCAGGCCCCGGTCCAAAATAAAG

Function

NR:

description
PREDICTED: RUN domain-containing protein 3B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621177.2 False 2808 mRNA 0.47 10 15437892 15448534
TU133653 True 502 lncRNA 0.42 1 15448197 15448698
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Neighbor

gene id symbol gene type direction distance location
LOC110534183 LOC106576069 coding upstream 37276 15374637 ~ 15400616 (+)
LOC110535783 LOC106606004 coding upstream 69682 15355848 ~ 15368210 (+)
LOC110535811 acbd7 coding upstream 101534 15329572 ~ 15336358 (+)
LOC110535774 LOC106576081 coding upstream 111892 15315600 ~ 15326000 (+)
LOC110535768 fam171a1 coding upstream 125975 15257269 ~ 15311917 (+)
LOC110535842 LOC106605985 coding downstream 311 15448845 ~ 15451856 (+)
LOC110535823 LOC106576036 coding downstream 18624 15467158 ~ 15477955 (+)
LOC110535866 gtpbp10 coding downstream 33857 15482391 ~ 15614954 (+)
osgin2 osgin2 coding downstream 175443 15623977 ~ 15633803 (+)
LOC110535935 LOC106575347 coding downstream 223452 15671986 ~ 15681594 (+)
G116252 NA non-coding upstream 24219 15410895 ~ 15413673 (+)
G116239 NA non-coding upstream 38976 15397846 ~ 15398916 (+)
G116190 NA non-coding upstream 124284 15312846 ~ 15313608 (+)
G116219 NA non-coding upstream 133024 15295142 ~ 15304868 (+)
G116269 NA non-coding downstream 30090 15478624 ~ 15479177 (+)
G116289 NA non-coding downstream 54748 15503282 ~ 15503845 (+)
G116323 NA non-coding downstream 118692 15567226 ~ 15575737 (+)
G116325 NA non-coding downstream 144661 15593195 ~ 15603938 (+)
G116224 NA other upstream 100190 15337430 ~ 15337702 (+)
G116207 NA other upstream 166283 15271202 ~ 15271609 (+)
LOC110508003 LOC106605954 other upstream 338641 15094896 ~ 15108480 (+)
G117048 NA other downstream 735152 16182890 ~ 16185784 (+)
LOC110536275 s10i other downstream 1547176 16995630 ~ 16998361 (+)
G117704 NA other downstream 1601598 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 1624667 17073201 ~ 17073701 (+)

Expression

rundc3b(LOC106576055) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 300.
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rundc3b(LOC106576055) Expression in each Bioproject

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rundc3b(LOC106576055) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4000.
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Co-expression Network