LOC110535842 (LOC106605985)


Basic Information

Item Value
gene id LOC110535842
gene name LOC106605985
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 15448845 ~ 15451856 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938948.1
GAGCAAGACTGATATAAACAGCTGAGAAAACTAGactaatattttatttttagaaaATGGCTTATAgatctccccccactctctctccttaagGAGTTGTCATGTCTTGAGTGCTGTCTCACAGATCAGTTTACATGGCAATGCACACATTTTACTGGCTTCACACACAGATCTCCCAGATCTTCTATGTGTAAGACAGAAGACGCAACACAGGACTCAAACTAACTACAACTGCAAAACTATTCAACACTGTGGTAAGAAAGCTGCTGACTAAACCAGGGTGAGTTTTGAAATTGAAAGTAACCTCACTCCAAATGCCATTAGTGAGTGAGAAAATGGCCTCCCAGGCATCTGTCCCAGAGAAGGATCTCTCCTGTCCTGTGTGCTCTGAAACCCTCAAGGAACCTGTTCTCCTGTCCTGTGGCCATAGCTGCTGTATAGCCTGTCTGGAGTCCTACTGGAAACGGATGGAATCATGGGAATGTCCAGTGTGCAGCATAAAATGCTATAAGGATTCGATGGCTCTTGCTCTGAAGAACCTGTGTATGCCGGGTGAGAACGGTTCAGCTAAACATGTCTGCAGTCTGCATAGCAAGCAACTCACACTGTTCTGTCTGGAGCATGAAGAGCCTATCTGTTCGGTGTGTGAGGGTTCAAGTAAACATAACACACATGAATGTATCCCAGTAGATGAGGCAGCTCTGGATCGCAAGAGGCAGGCCCGGAAGACAGAAAATCAGATTCAGGAGGACTTCGAGAAACTTCACCAGTTTCTACGATATGAAGAGGCAGCCAGGATGGCTGtcctgagggaggaagaggaggagaagagtcgGAGAATGAAGAAGATGATTGATGATATGAACAGAGAGATAGCAGCCATTTTAGACACAACGAGAGCCATAAAGAAGGACCTGGTATCTGATGACATCTCATTCCTGCAGAACTACAAGGACACGTTAAAAAGAGCCCAGTGCACAATCCCAGATCCAGAGCTTGTTTCTGGAGCGCTGATCAATGTGGCAAAGCACCTGGGCAACCTGCAGGTCAGAGTTTTGGAGAAGATGCTGAAGTCTGTTCAATACACGCCTGTGATTCTGGACCCCAACACTGCCCATCCATGTCTCACCCTGTCTGATGATCTGACCAGTATGAGATTCAGTGATGGGATACAGCTGCTTCCTGACAACCCAGAGAGGTTTGATAACTATCGGATGGTCCTGGGCTCTGAGGGCTTTGACTCTGGGACACACAGTTGGGATACAGACGTCGGGGACAATACAGTATGGTTTGTAGGTGTAGTCTATAAGTCTGTCCAGAGGAAGGGAGTGGTACAGACTGGACTCTGGCGTGTAGGCTATTATAATGATAAATACTGGGCACGTTGTCCAAAAGGGCCACAGACTGTCCTGACACTGGAAAATAAACCCCATCGGATCAGAGCGCAGCTGGACTGGAACAGAGATACACTGTCCTTTTACGACCTTgataataacacacacatacacacgttcacacacacttttacagagAGATTGTTTCCATACATCAACATTGGCAGTAATCTCTACGCTGCTAGGATCTTACCAGGGAAAGCCTCTGTAACAGTGGAACAGCACATTATACCTCCCCATGCTAGCCCTTCTTCCTTTTAACTTGATCAGTTGTTGTGGTACGCTGACGCAACGGAAGGCACCACTACCTCCGTGATTTAGATTTGTTTGACAGGATTCAATTATGAATTGTATTATCATATGAATTATTACATGTTAACAACAGAAACTACTGGATTGAACCAAATCACACATT
>XM_021621164.2
GAGCAAGACTGATATAAACAGCTGAGAAAACTAGactaatattttatttttagaaaATGGCTTATAgatctccccccactctctctccttaagGAGTTGTCATGTCTTGAGTGCTGTCTCACAGATCAGTTTACATGGCAATGCACACATTTTACTGGCTTCACACACAGATCTCCCAGATCTTCTATGTGTAAGACAGAAGACGCAACACAGGACTCAAACTAACTACAACTGCAAAACTATTCAACACTGTGGTAAGAAAGCTGCTGACTAAACCAGGGTGAGTTTTGAAATTGAAAGTAACCTCACTCCAAATGCCATTAGTGAGTGAGAAAATGGCCTCCCAGGCATCTGTCCCAGAGAAGGATCTCTCCTGTCCTGTGTGCTCTGAAACCCTCAAGGAACCTGTTCTCCTGTCCTGTGGCCATAGCTGCTGTATAGCCTGTCTGGAGTCCTACTGGAAACGGATGGAATCATGGGAATGTCCAGTGTGCAGCATAAAATGCTATAAGGATTCGATGGCTCTTGCTCTGAAGAACCTGTGTATGCCGGGTGAGAACGGTTCAGCTAAACATGTCTGCAGTCTGCATAGCAAGCAACTCACACTGTTCTGTCTGGAGCATGAAGAGCCTATCTGTTCGGTGTGTGAGGGTTCAAGTAAACATAACACACATGAATGTATCCCAGTAGATGAGGCAGCTCTGGATCGCAAGGAAGAGCTCTTAGAGACAGGCCTGAAGCCCTTAGAGGAGCAGCTGGAGGGATTCAAACAATTCAAACAAAGCTTTGAAGAAACAGCAGAGCTTATTAAGAGGCAGGCCCGGAAGACAGAAAATCAGATTCAGGAGGACTTCGAGAAACTTCACCAGTTTCTACGATATGAAGAGGCAGCCAGGATGGCTGtcctgagggaggaagaggaggagaagagtcgGAGAATGAAGAAGATGATTGATGATATGAACAGAGAGATAGCAGCCATTTTAGACACAACGAGAGCCATAAAGAAGGACCTGGTATCTGATGACATCTCATTCCTGCAGAACTACAAGGACACGTTAAAAAGAGCCCAGTGCACAATCCCAGATCCAGAGCTTGTTTCTGGAGCGCTGATCAATGTGGCAAAGCACCTGGGCAACCTGCAGGTCAGAGTTTTGGAGAAGATGCTGAAGTCTGTTCAATACACGCCTGTGATTCTGGACCCCAACACTGCCCATCCATGTCTCACCCTGTCTGATGATCTGACCAGTATGAGATTCAGTGATGGGATACAGCTGCTTCCTGACAACCCAGAGAGGTTTGATAACTATCGGATGGTCCTGGGCTCTGAGGGCTTTGACTCTGGGACACACAGTTGGGATACAGACGTCGGGGACAATACAGTATGGTTTGTAGGTGTAGTCTATAAGTCTGTCCAGAGGAAGGGAGTGGTACAGACTGGACTCTGGCGTGTAGGCTATTATAATGATAAATACTGGGCACGTTGTCCAAAAGGGCCACAGACTGTCCTGACACTGGAAAATAAACCCCATCGGATCAGAGCGCAGCTGGACTGGAACAGAGATACACTGTCCTTTTACGACCTTgataataacacacacatacacacgttcacacacacttttacagagAGATTGTTTCCATACATCAACATTGGCAGTAATCTCTACGCTGCTAGGATCTTACCAGGGAAAGCCTCTGTAACAGTGGAACAGCACATTATACCTCCCCATGCTAGCCCTTCTTCCTTTTAACTTGATCAGTTGTTGTGGTACGCTGACGCAACGGAAGGCACCACTACCTCCGTGATTTAGATTTGTTTGACAGGATTCAATTATGAATTGTATTATCATATGAATTATTACATGTTAACAACAGAAACTACTGGATTGAACCAAATCACACATTT
>TU133662
AGCAGCCATTTTAGACACAACGAGAGCCATAAAGAAGGACCTGGTATCTGATGACATCTCATTCCTGCAGAACTACAAGGACACGTTAAAAAGAGCCCAGTGCACAATCCCAGATCCAGAGCTTGTTTCTGGAGCGCTGATCAATGTGGCAAAGCACCTGGGCAACCTGCAGGTCAGAGTTTTGGAGAAGATGCTGAAGTCTGTTCAATACACGCCTGTGATTCTGGACCCCAACACTGCCCATCCATGTCTCACCCTGTCTGATGATCTGACCAGTATGAGATTCAGTGATGGGATACAGCTGCTTCCTGACAACCCAGAGAGGTTTGATAACTATCGGATGGTCCTGGGCTCTGAGGGCTTTGACTCTGGGACACACAGTTGGGATACAGACGTCGGGGACAATACAGTATGGTTTGTAGGTGTAGTCTATAAGTCTGTCCAGAGGAAGGGAGTGGTACAGACTGGACTCTGGCGTGTAGGCTATTATAATGATAAATACTGGGCACGTTGTCCAAAAGGGCCACAGACTGTCCTGACACTGGAAAATAAACCCCATCGGATCAGAGCGCAGCTGGACTGGAACAGAGATACACTGTCCTTTTACGACCTTgataataacacacacatacacacgttcacacacacttttacagagAGATTGTTTCCATACATCAACATTGGCAGTAATCTCTACGCTGCTAGGATCTTACCAGGGAAAGCCTCTGTAACAGTGGAACAGCACATTATACCTCCCCATGCTAGCCC

Function

NR:

description
E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938948.1 False 1809 mRNA 0.46 5 15448845 15451855
XM_021621164.2 False 1909 mRNA 0.46 6 15448845 15451856
TU133662 True 768 TUCP 0.40 4 15450468 15451688

Neighbor

gene id symbol gene type direction distance location
rundc3b LOC106576055 coding upstream 311 15437892 ~ 15448698 (+)
LOC110534183 LOC106576069 coding upstream 48229 15374637 ~ 15400616 (+)
LOC110535783 LOC106606004 coding upstream 80635 15355848 ~ 15368210 (+)
LOC110535811 acbd7 coding upstream 112487 15329572 ~ 15336358 (+)
LOC110535774 LOC106576081 coding upstream 122845 15315600 ~ 15326000 (+)
LOC110535823 LOC106576036 coding downstream 15302 15467158 ~ 15477955 (+)
LOC110535866 gtpbp10 coding downstream 30535 15482391 ~ 15614954 (+)
osgin2 osgin2 coding downstream 172121 15623977 ~ 15633803 (+)
LOC110535935 LOC106575347 coding downstream 220130 15671986 ~ 15681594 (+)
LOC110534191 LOC105029233 coding downstream 239276 15691132 ~ 15694443 (+)
G116252 NA non-coding upstream 35172 15410895 ~ 15413673 (+)
G116239 NA non-coding upstream 49929 15397846 ~ 15398916 (+)
G116190 NA non-coding upstream 135237 15312846 ~ 15313608 (+)
G116269 NA non-coding downstream 26768 15478624 ~ 15479177 (+)
G116289 NA non-coding downstream 51426 15503282 ~ 15503845 (+)
G116323 NA non-coding downstream 115370 15567226 ~ 15575737 (+)
G116325 NA non-coding downstream 141339 15593195 ~ 15603938 (+)
G116224 NA other upstream 111143 15337430 ~ 15337702 (+)
G116207 NA other upstream 177236 15271202 ~ 15271609 (+)
LOC110508003 LOC106605954 other upstream 349594 15094896 ~ 15108480 (+)
G117048 NA other downstream 731830 16182890 ~ 16185784 (+)
LOC110536275 s10i other downstream 1543854 16995630 ~ 16998361 (+)
G117704 NA other downstream 1598276 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 1621345 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 1948157 17395343 ~ 17421816 (+)

Expression


Co-expression Network