LOC110535823 (LOC106576036)


Basic Information

Item Value
gene id LOC110535823
gene name LOC106576036
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 15467158 ~ 15477955 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621155.2
GAAAGTAATGATAACTTTCAGCAACAACACCCCCTTTTTGGAATGACGGGATTTTTCGAAGCGGGAAAGAACATCTATGGCACAACAAAATATTATGGCAACAAAATAATCTTAGCGGAATCAAAACAATTTAAAGATACTACTGAACTTTCGTGAAATCGGTTGTAACAAATGTCAATTTAGGGAAATATATTGTTTTACAAGACCACAGGCTCTCACGAGGAGAATACAAGGATATTCTATTCTCCTCTCAAATTATATTGAATAAGATGAAATCTAGACGCACCCAAAAGTCTACAAAACCCCGTTTACAAGACCCCAAACTCGCTGATAAGGGGCACAAGTCAGCCTCGAAGAGCCATGCCAAACCACCATGTGAATCTTATCCTGCCCAAAAAAAGCCTTTCACTGGGAAACTATTCTACTTAGATTTGCCATCAAACAGAAGAGCAGAGACATTAGAGAACGATATCAAAAGGTTTGGAGGGaCGGTGGAGAAGTTCTTCAGCAAGGAGATCAAGTACCTGGTGTCTAATAAGAGAGAGGCCAGGTATGTGCAGTGTCATGGCCGCGACTCACTTGTCCCAAGCCCTGACTCTGGGCACagctctccccaccccctcccccgTCCCGGCAGCCACAGAGACAGCCTCAAAGGAAGCTCCCAGGGCCAGGCAGACTTGGTGGTCATAAGCAGGGGCAAGTCTTTTGTGAAGAGAGTTGTAAAAGAGCAGGTGAGAATACAGGTCAACGAGATCCTGTCCAATGCTCTGGAGTGGGGAGTGAAAATCCTGTACATTGAAGATGTAATGGCTTATATGGAAAAGAAGAAAAGTAATGTTAAGTATACTGCTGAAAAGCCAACCGCAACCACAGCTGCTGTCAAGAAAAGTGCCAAAAGAGAACCTACAGGAAAACCAGCCTTCCAGAAGTATAAGGGTGGAAGGATCCGTAAACCCTTTGTAAAGGTAGTGGACTCCAGTAGACATTACCGTCCAATTTATCTGGCCATGCCGAACATGCCAGAGTTTAACCTAACGTCAGCTCCCCCCTGCAGTCCATTCTATGTAGAGGACCAGGAATACTCTGGGAAGAGACCTAAAGTGCACGGGTGTCTCAGGAACCGAGGGGCGAGAGTGTCAGCCAGTGAGGCGAGGGGGCAGGACCGGGCCAGGAGGAACAGGGAGAAGAAACGTGGAGGCTACTGCGAGTGCTGCACGCTCAAATACAACAACATCAAAGCTCACCTGCGGAGTAAGCAGCACAAGGCCTTCTCCAGAAGTGATGAGTACCTGGTGGTGGACAGGCTCATCACCACACTGCCCTTCAACTTCAGTCACGTCAAAACAACACAAACTCCAACCACAAGGTCAAAGTACAGCATAACCTCCCTGATGTGTGTTCCTGGACCCAGTATACAGATGGAAACCAAAGAGCTGAAGGGGGGATTAATGTCCCTCTGGTCTACTACAGTGGAGCCCACTCTCTCTCCGAGTGTGGAAAACCCCTTGGAACAGCCTCGGAAGCGCAGCCGAGGAGCCCCTGTTCCCCACAGCACCAGCGAGGGTGAGAAGAGGTGCTCTTACGTCCCAGACAGACCCCAGCCCAAGCACAGATCCCTGTCCTGCAAACAATGCTGCCGACAGGGATACCCGCGCAAGCACCCCCAGAGGGCTGGGCTGAGTCAGACACCTGTGTCTAATGCAGAAATAGACCCTTCTACCCATGACTCTGTCGCCAGCCCCAGACTTTCCCATCAGGGCCAGAGAACTCACACAGGCAAAGATGGCCGCTCTTCATTTAGTCACACAGAGGATTTACAATGTGGCGATCCAGCTAGACGTGTGAAGGTCCCTTCCAGTCAGTACGAGGTGGCAGGGCCTTCAGAACACCACAAGCTCAGAGCTTTAGAGGAGAGTGAACTGAGTCATGATACGTTGGCTGGGGATACTCTTCCCAGGAATACTGGGGGTGTTCCGGAGCTCGAGGCAGGTGACACGGagacacacacccctcctcctgcCAGGACGTTACAGAGGAGGGTCAGGGATTACAGACGGAAGAGAAGGAAAGTTGAGAAGCAGCGGACTGCTCAGGAGCAGGAAAAACCGAGCAATGTTCCCAGCAGCTCTCTGCTGAACCTCTGGCAGCTGTTCCACTCCAGTGAGGACATGGAGTGTGAGTTCAGAGGCTTTCCCAGCTGTTCCACTCCAGTGAGGACATGGAGTGTGAGTTCAGAGGCTTTCCCAGCTGTTCCACTCCAGTgaggacagggggggttagggtgaCCCAGAATCTTCCCAATATGAGCGCTAACTTGTTACGGACTCACCATATGAACTTATTGTATGACAGTTTCATTAAGTGACATAGCAGATCTATATGGGAACCCATTGACTGTGGCTCTTTAAACCTATGACTTCTATAAAGGGAAGTCAGTAGTTCCCTTCAGGTTGGGAGGGTGGTGGCGCAACACTGTTGTGTTGATTTAACCATGGCAGCTTTTAGTCTACCTGGCTTTTTTACCATGACTGGTTTTATCTGGAGAACAGGCTGGAGCACTATCCTCGGTTCTGTACAACGCCTGCATGTGTTCTGGTGTCCAGAGGAACTGCATGGTTGTGTTTTTAGTATGTggtattgtatatatttttttaatttaaaaaataaaaagggatACAACCGAA

Function

NR:

description
protein DBF4 homolog A-like isoform X3

GO: NA

KEGG:

id description
K06629 ASK, DBF4; activator of S phase kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621155.2 True 2687 mRNA 0.49 13 15467158 15477955
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110535842 LOC106605985 coding upstream 15302 15448845 ~ 15451856 (+)
rundc3b LOC106576055 coding upstream 18624 15437892 ~ 15448698 (+)
LOC110534183 LOC106576069 coding upstream 66542 15374637 ~ 15400616 (+)
LOC110535783 LOC106606004 coding upstream 98948 15355848 ~ 15368210 (+)
LOC110535811 acbd7 coding upstream 130800 15329572 ~ 15336358 (+)
LOC110535866 gtpbp10 coding downstream 4436 15482391 ~ 15614954 (+)
osgin2 osgin2 coding downstream 146022 15623977 ~ 15633803 (+)
LOC110535935 LOC106575347 coding downstream 194031 15671986 ~ 15681594 (+)
LOC110534191 LOC105029233 coding downstream 213177 15691132 ~ 15694443 (+)
LOC110535950 LOC106575322 coding downstream 223231 15701186 ~ 15734894 (+)
G116252 NA non-coding upstream 53485 15410895 ~ 15413673 (+)
G116239 NA non-coding upstream 68242 15397846 ~ 15398916 (+)
G116190 NA non-coding upstream 153550 15312846 ~ 15313608 (+)
G116269 NA non-coding downstream 669 15478624 ~ 15479177 (+)
G116289 NA non-coding downstream 25327 15503282 ~ 15503845 (+)
G116323 NA non-coding downstream 89271 15567226 ~ 15575737 (+)
G116325 NA non-coding downstream 115240 15593195 ~ 15603938 (+)
G116224 NA other upstream 129456 15337430 ~ 15337702 (+)
G116207 NA other upstream 195549 15271202 ~ 15271609 (+)
G117048 NA other downstream 705731 16182890 ~ 16185784 (+)
LOC110536275 s10i other downstream 1517755 16995630 ~ 16998361 (+)
G117704 NA other downstream 1572177 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 1595246 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 1922058 17395343 ~ 17421816 (+)

Expression

LOC110535823(LOC106576036) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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LOC110535823(LOC106576036) Expression in each Bioproject

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LOC110535823(LOC106576036) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network