LOC110535950 (LOC106575322)


Basic Information

Item Value
gene id LOC110535950
gene name LOC106575322
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 15701186 ~ 15734894 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939143.1
TCTGAGCGGAGCTCGGGACGACAGCCAGGGCGCAAAGAGCAAGCGGGTTGAAACCGGAGTAGCCTGAACTGCTTGTACAAGGAAGTTCGTTGCAAAAATGAAGTTGGCTGATATTATCCTCACGTGAAGACAATACGgaatatggagagagagtgacaacAGAAAATGACAAAGACGTTGTCAGAGTAAATGAGCGTACTGACTCTTAACAGAGATGGTAGTGCATGTTTTAAAGCGCATGCGCCGTCCCTGCCTCTAGAGCAGCAGGTAGTTCTATATATTTAGAATTAAAGATCCAAAGTTTTTGAAGTTATTTATGGTGCATTGCATACTAAGTGCACAGCAAAACGCGCGGTAGAATATACAATATAAAGGGGTGTGTAGACACGCTTGTCCCAGGAGTGTGAAGTGGCGTAGTGTGTGTCAGAGCCAGGTGCAAGCACACGCAGTTTGTTTTGACGGGGGGAGTTATGGAATATGAGGAGCCCGAATCACCCGAACACATCACTACAGAAGAGCCAATCAAAAGAGGAGACACTGTGTCCAAGAAGACTCATTTGActCAGATTGAGGTGATTCCCTGTAAGATCTGTGGTGATAAATCATCAGGAGTTCACTATGGAGTCATCACCTGCGAGGGCTGCAAGGGTTTTTTCCGGCGTAGCCAGCTGCCGTCCGTGTCCTACTCCTGTTCCAGACAGAGTAACTGTCCTATAGACAGAGCCAGCCGCAACCGTTGCCAGAGCTGCCGACTGCAGAAGTGTGTGACCCAGGGCATGAGCCGGGATGCGGTGAAGTTTGGTCGGATGTCGAAACGTCAGCGGGAGTCTCTGCGTGCCGAGGTGGAGAGACACCGTCAGCTGCAGCAGCAGCATCTCCAGGCAGAGGCCCAGCCCGCCCTGCCCTACCCCAGCAAGGCATACCGTTTCCGGACACCCCACCTGCTCCAGGCCCCGGCTCCGGCCTACTCCTTCCCTGGAGAGCCAGAGCTGCCACCCTGCCCGACAGATGTGCTCCCCTACCTGGTGTGCTCCCCAGGCGAGTCCCAGGCTCCAGGTCTGGCCTACCAGGGCTCCTGTGTGTCTCCTGGTAGTGGGCACTCAGACGAAAGAGGGTTCGACTCCCGTCAGCCGTCTCCTGACCAGACGATAGGGATGGGAATTAGACCGTTTGACCCAGAAGACCCCTACTGCCCTTACCGCCCCTCCCTGCTACACATAGAGGAGCTGTGTGACAGTGTCGTGCGGTCCCATAGGGACACCAGTCAGTTCAGACTAGAGGAACTACAGGCTCTGAGATGGAAGTTGTTCAGCAGAGAGGAGATCCATGCCTACCAGAGCAAGTCAGTAGATGAGATGTGGCAGCACTGTGCTGTGAGGCTGACTGAAGCGGTACAGTACGTGGTGGAGTTTGCCAAACGCATCCCAGGGTTCCGTGGGCTTGGACAGAACGACCAGATCACCCTGCTCAAGACTGgatcGATGGAGGTGGTTCTGGTTAGAATGAGCAGGTGTTTTAACACAGAGAACAGCACCGTCTTCTTCGATGGGAAGTTTGGCAGCACTGAACTTTTCAAGTCTCTGGGCTGTGGTGATCTGATGGTGGCGGTGTTTGACTTCGCTCACAGTGTGTGTGCCCTGAGACTGACTGAGCAGCAGATGGCTCTCTTCAGCTCACTGGTGCTCATTAACCCAGatcgcCCCTGTCTTGAGGATAGAGGCAGAGTACATAGAATGAGAAGAGACTTGGAGGTATGCCTCAGTCACATGCTACGCAGAGACAACCAGGAGAGTCTTCAGCACAAGCTCTACCAGAAGGTGTCAGTGTTGCGGTCTCTGTGCAGTCTTCATGTGGAGAAGCTGCACTGGTTCAGCCAGCGCTACCCGCTCACCGTCCACTCTGTCTTCCCTCCTCTATACAAGGAGCTGTTCACCTCTGACCTGCCTTCTGTGGACTCCCTGTGAACTCCCTCTGAACTGCACCGTACATGTTGACAGATAATTAGACAAAGAAACATGcatacagtagacagacagacacacacaaacacacacagacacacagagacacagacactcagagacacaaacacttacacagagacacagacactcagagac
>TU133783
gtagatcgcCCCTGTCTTGAGGATAGAGGCAGAGTACATAGAATGAGAAGAGACTTGGAGGTATGCCTCAGTCACATGCTACGCAGAGACAACCAGGAGAGTCTTCAGCACAAGCTCTACCAGAAGGTGTCAGTGTTGCGGTCTCTGTGCAGTCTTCATGTGGAGAAGCTGCACTGGTTCAGCCAGCGCTACCCGCTCACCGTCCACTCTGTCTTCCCTCCTCTATACAAGGAGCTGTTCACCTCTGACCTGCCTTCTGTGGACTCCCTGTGAACTCCCTCTGAACTGCACCGTACATGTTGACAGATAATTAGACAAAGAAACATGcatacagtagacagacagacacacacaaacacacacagacacacagagacacagacactcagagacacaaacacttacacagagacacagacactcagagacacaaacacttacacagagacacagacacacacagacacagagacacagacacacacagacacttagagacacacaaacactcagagacacatacacagagacacagacacacaaacttagacacacagagacacagacacatgagAATGCATTGATAACATGAGATGAAATGACTTTGAATGCTTCACTTgttgaataaatatatttttgttatttcagagagcaatgatttgatttgatggtaaTTTCAGTAGCCTATTAGTGATTGGACATTGAAGCGATTTTCATGCAAAACAATGTTTTAtacgttgttgttttgtttttccttTTTGAGAGTGTTATTCCGTCCTTGAGATGATGTTATTTTGACTCAGGGCGGCTGTTGTGACTGTATCCAGACCAGTTGCTAGCTGGTATAAATTACCATATTTAGATGATCACTATGAAATCTAATGGGTGTTTTCTGAGTTGTTTTTAAATGTGTGACTTTACAGAGTTGGCTAACCCATCAGACTGAGTACCTAAGTTATAGCCCATGGGCCCCACGGTTCAGGACCCAAACACACAGTCAAGTATATAGCTAGTCTTCTCAAAGAACTGTGTGTGGATCGAATTTGACCAACAATCCTATCTGTCTCTATCGAGCTTTAAAAGAGGCTGTGTGTTGCATTAAAACAGAGTCAGAAATCCTAGACAGGCAGAAATGTAAATATGAATAATCTAGAACATATAGAACGTAGATGCTGGGTAATATTGCTGTAGGACTACAGTATGTAGGTAGGCATTTGAATGACTAACTTTGAGCATGACTGTTATTGTAAACAGATTTCACAAACATTACCGGTGTGTTTCTTTAACATTCTCTCTCTGTTAGTTTGTCTCCTAAGTGTTACCATGGTGATTCCCATGGCTTCCAATAAACTGCTGA
>TU133784
TTTCTGAGTTGTTTTTAAATGTGTGACTTTACAGAGTTGGCTAACCCATCAGACTGAGTACCTAAGTTATAGCCCATGGGCCCCACGGTTCAGGACCCAAACACACAGTCAAGTATATAGCTAGTCTTCTCAAAGAACTGTGTGTGGATCGAATTTGACCAACAATCCTATCTGTCTCTATCGAGCTTTAAAAGAGGCTGTGTGTTGCATTAAAACAGAGTCAGAAATCCTAGACAGGCAGAAATGTAAATATGAATAATCTAGAACATATAGAACGTAGATGCTGGGTAATATTGCTGTAGGACTACAGTATGTAGGCATTTGAATGACTAACTTTGGGCATGACTGTTATTGTAAACGTGTCAGATTTGTTGCTTTAACATGCTCTCTGTTAGTTTGTCTCCTAAGTGTTACCATGGTGATTCCCATTGAAAAGGCTTCCAATAAACTGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939143.1 False 2120 mRNA 0.53 11 15701186 15729563
TU133783 False 1357 lncRNA 0.42 3 15727844 15730523
TU133784 True 454 lncRNA 0.39 2 15730056 15734894

Neighbor

gene id symbol gene type direction distance location
LOC110534191 LOC105029233 coding upstream 6743 15691132 ~ 15694443 (+)
LOC110535935 LOC106575347 coding upstream 19592 15671986 ~ 15681594 (+)
osgin2 osgin2 coding upstream 67383 15623977 ~ 15633803 (+)
LOC110535866 gtpbp10 coding upstream 86919 15482391 ~ 15614954 (+)
LOC110535823 LOC106576036 coding upstream 223231 15467158 ~ 15477955 (+)
ecm1b ecm1 coding downstream 12767 15742330 ~ 15755295 (+)
LOC110535970 LOC106575371 coding downstream 30386 15759949 ~ 15783001 (+)
LOC110535991 LOC100194679 coding downstream 54046 15783609 ~ 15787419 (+)
znf687a LOC106575274 coding downstream 58230 15787793 ~ 15801771 (+)
LOC118937786 NA coding downstream 91280 15820843 ~ 15826530 (+)
G116368 NA non-coding upstream 1525 15699413 ~ 15699661 (+)
G116340 LOC106575260 non-coding upstream 52071 15644897 ~ 15649115 (+)
G116325 NA non-coding upstream 97248 15593195 ~ 15603938 (+)
G116323 NA non-coding upstream 125449 15567226 ~ 15575737 (+)
G116416 NA non-coding downstream 86875 15816438 ~ 15816979 (+)
G116429 NA non-coding downstream 109063 15838626 ~ 15840462 (+)
G116442 NA non-coding downstream 136359 15865922 ~ 15866182 (+)
G116446 NA non-coding downstream 139075 15868638 ~ 15868837 (+)
G116454 il6ra non-coding downstream 150321 15879884 ~ 15917888 (+)
LOC110535842 LOC106605985 other upstream 249498 15448845 ~ 15451856 (+)
LOC110535783 LOC106606004 other upstream 334397 15355848 ~ 15368210 (+)
G116224 NA other upstream 363484 15337430 ~ 15337702 (+)
LOC110535811 acbd7 other upstream 364828 15329572 ~ 15336358 (+)
G116207 NA other upstream 429577 15271202 ~ 15271609 (+)
G117048 NA other downstream 454123 16182890 ~ 16185784 (+)
LOC110536275 s10i other downstream 1266147 16995630 ~ 16998361 (+)
G117704 NA other downstream 1320569 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 1343638 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 1670450 17395343 ~ 17421816 (+)

Expression


Co-expression Network