LOC110536080 (LOC106575458)


Basic Information

Item Value
gene id LOC110536080
gene name LOC106575458
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16023748 ~ 16035989 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939344.1
ACAATCCCGGATGTCAACAAACGATATCACCAACAGGGAAGTGTCAAAGCTTCGTTGTTACAGATTTTCCAATGGATTAACTGAGATTTGATAATTAATGTTACAGTCACTCGTGTACATTCTGAAAGGAACAATGAGTGAGTTCTGTTGATTCTACGCTAGTTTAGCTTTTGACGAAGACTTTCAACATGAGGTCCGATTCTCCTCTCTCCAGCGTCAACGTAGTGCTTGTTATGGCCTACGGAAGTCTAGTGTTTGTGCTGCTGTTCATCTTTGTGAAGAGGCAGATCATGCGCTTCGCCATGAAGTCTCGTAGAGGACCACATGTACCCCTGGGCCACAACGCTCCaaagGAGCTGAGACAGGAGATAGACTGTGGTCTGTCCAAGGTTCAGGAGATCCGCTTTGAGCCACGCCTGCTGTCTGAACAGGACGACAGACTGCAGAGTGGCGgTTGCTATGACTACCTATACAGAATGAGGGCACTAGATGCCATAAGAGACTCTGATATTCCGTTCAGTGAGTTGGGAGGGACTCCCACAGCTGTGACAGGGAGGAGATTCCGCGCCTGGCTTCTAGATCTGAGGAGTTCCCATTCCCTGTTCTGCAGCAGCCGTAGTTCCCTCATAGACACACTGCTGGAGGGCTACCACAACGCTCGCCACGGCACCGGggTGTTTGGAGAAGCAGAGTTTGTCAAATACAAGGAAGCCCTGAACGAACTGGCCTCTGTTTATTCTTCTCTCCCCAGTGTGAAGAGCCACTCCAGTTCCACTAGTCTGGACCAGCATCACCAGTTAGCAGCTAAAGACTTGACCAGTACCCCAGagcccaccccctcctctcccccctcccaggTCACATACCTGCCGTCAGCTGGGCAACGCACCAAACGACCAAAACACTTCCTGGAACTCAAGAACTTTAAAGACAAGTACAACACCTTGGAAAGCACATTCTGAGAACTACAATCTCCTATGGCATAACACAAGAAACTACAATTCCCGACAACTTGCTGCCTCTGACAACTGCAACTCCCTACAACCCTGAGAACTTACAACTCCCTAGAAAACAACCTGAAAACTACAACAACTTCTCTGCTACTACTTTAAATCTGTTTTGTTGCGAGTACTGGACACTTTTCCTTCTCTATTTCCAAATTAGATAGCCTAGTGAAAagaacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggccgtcactgaaaataagaatttgttcttaactgacttgcctagttaaataaaggttcaataaaacggAAGTGAAGGTAGTGATAAGTAGAGCTCCTGGAGGTGACAGATACTGGGGTTTGTGGTAAAAGAAGAGGTTGGTGAGTTAGTTTAGTGAGAGACTTGTTAGTgccagcagagagagaagagacttgGTAGGGTTGGTACTTGGTACAGTTGGGAAGACTGGAGCACAGCAGGATTAACAGTAGCATAGCACAGCAGTATAGGAATGACAGTAACATTACGCTGCCCTACTAGTCCTGAGGAAAAACACTGCCTACTATCTATCATGCATCTCACATAATAAATAGTGCACTAGATTTAAGCTTATTTGACGTTAAACATCGTTGTGAACTTTTGCACAGACTTTGCAGGTAGATCATCATGTAGGGCTATGCAAAAGAGATGAGACCAGACAAGCTACATGCAGTTTCTATGCAGAATGCATTaatgcagtgtttcccaaacttggtcctggggacccGAAGTGGTGCACGTTTTgggttttgccctagcactacacaactgagtcaaataatcaactaatcatcaagctttgattatttgaatgagCTGTGTCGTCCTAGAGCAGAACCTGAAACGTACATctcttggggtccccaggactgagtttgggaaacgctgcattAATGCACAGTGTTAGAGTAAGACTTGTTTATAATGTGATCATCTGCTAACTAAGCTATTGATGGACTAACGTTATAGCAGACCAGCGTTCCTCACAATGGCcctggagagctacagtacaggctGGGCAGGCTTTTGTTCCCGCCTAGCACTAACACACCTCCAATCAGGCTGATTAGTAGAATCCGGTTAGTCACTGTTGAGCTGGAACAGTACAGAAGAACTATGGATTATTCCAGTATTACTGCTAGACATTTCCAGTATTATTGTCCTGTTGCCAGCACTTGTTTAGGGCAGAGCCATGTATTTACATATATATTGCTCTGGTTTAGGGCTAGTGTTACAAGGAAATGAACATGTTACCACATCTGATGGTTGTCTATTTGCTGCATAAAAATGATTATACTTTTTAGagtcaatgtttttttgttgttgctgaaatCTTTTTTTGTATTCCATTTTTAAAGATAATAATTTAGAATAAAGCGTTCATGTTAA
>XM_036939353.1
CAATCCCGGATGTCAACAAACGATATCACCAACAGGGAAGTGTCAAAGCTTCGTTGTTACAGATTTTCCAATGGATTAACTGAGATTTGATAATTAATGTTACAGTCACTCGTGTACATTCTGAAAGGAACAATGAGTGAGTTCTGTTGATTCTACGCTAGTTTAGCTTTTGACGAAGACTTTCAACATGAGGTCCGATTCTCCTCTCTCCAGCGTCAACGTAGTGCTTGTTATGGCCTACGGAAGTCTAGTGTTTGTGCTGCTGTTCATCTTTGTGAAGAGGCAGATCATGCGCTTCGCCATGAAGTCTCGTAGAGGACCACATGTACCCCTGGGCCACAACGCTCCaaagGAGCTGAGACAGGAGATAGACTGTGGTCTGTCCAAGGTTCAGGAGATCCGCTTTGAGCCACGCCTGCTGTCTGAACAGGACGACAGACTGCAGAGTGGCGgTTGCTATGACTACCTATACAGAATGAGGGCACTAGATGCCATAAGAGACTCTGATATTCCGTTCAGTGAGTTGGGAGGGACTCCCACAGCTGTGACAGGGAGGAGATTCCGCGCCTGGCTTCTAGATCTGAGGAGTTCCCATTCCCTGTTCTGCAGCAGCCGTAGTTCCCTCATAGACACACTGCTGGAGGGCTACCACAACGCTCGCCACGGCACCGGggTGTTTGGAGAAGCAGAGTTTGTCAAATACAAGGAAGCCCTGAACGAACTGGCCTCTGTTGTGAAGAGCCACTCCAGTTCCACTAGTCTGGACCAGCATCACCAGTTAGCAGCTAAAGACTTGACCAGTACCCCAGagcccaccccctcctctcccccctcccaggTCACATACCTGCCGTCAGCTGGGCAACGCACCAAACGACCAAAACACTTCCTGGAACTCAAGAACTTTAAAGACAAGTACAACACCTTGGAAAGCACATTCTGAGAACTACAATCTCCTATGGCATAACACAAGAAACTACAATTCCCGACAACTTGCTGCCTCTGACAACTGCAACTCCCTACAACCCTGAGAACTTACAACTCCCTAGAAAACAACCTGAAAACTACAACAACTTCTCTGCTACTACTTTAAATCTGTTTTGTTGCGAGTACTGGACACTTTTCCTTCTCTATTTCCAAATTAGATAGCCTAGTGAAAagaacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggccgtcactgaaaataagaatttgttcttaactgacttgcctagttaaataaaggttcaataaaacggAAGTGAAGGTAGTGATAAGTAGAGCTCCTGGAGGTGACAGATACTGGGGTTTGTGGTAAAAGAAGAGGTTGGTGAGTTAGTTTAGTGAGAGACTTGTTAGTgccagcagagagagaagagacttgGTAGGGTTGGTACTTGGTACAGTTGGGAAGACTGGAGCACAGCAGGATTAACAGTAGCATAGCACAGCAGTATAGGAATGACAGTAACATTACGCTGCCCTACTAGTCCTGAGGAAAAACACTGCCTACTATCTATCATGCATCTCACATAATAAATAGTGCACTAGATTTAAGCTTATTTGACGTTAAACATCGTTGTGAACTTTTGCACAGACTTTGCAGGTAGATCATCATGTAGGGCTATGCAAAAGAGATGAGACCAGACAAGCTACATGCAGTTTCTATGCAGAATGCATTaatgcagtgtttcccaaacttggtcctggggacccGAAGTGGTGCACGTTTTgggttttgccctagcactacacaactgagtcaaataatcaactaatcatcaagctttgattatttgaatgagCTGTGTCGTCCTAGAGCAGAACCTGAAACGTACATctcttggggtccccaggactgagtttgggaaacgctgcattAATGCACAGTGTTAGAGTAAGACTTGTTTATAATGTGATCATCTGCTAACTAAGCTATTGATGGACTAACGTTATAGCAGACCAGCGTTCCTCACAATGGCcctggagagctacagtacaggctGGGCAGGCTTTTGTTCCCGCCTAGCACTAACACACCTCCAATCAGGCTGATTAGTAGAATCCGGTTAGTCACTGTTGAGCTGGAACAGTACAGAAGAACTATGGATTATTCCAGTATTACTGCTAGACATTTCCAGTATTATTGTCCTGTTGCCAGCACTTGTTTAGGGCAGAGCCATGTATTTACATATATATTGCTCTGGTTTAGGGCTAGTGTTACAAGGAAATGAACATGTTACCACATCTGATGGTTGTCTATTTGCTGCATAAAAATGATTATACTTTTTAGagtcaatgtttttttgttgttgctgaaatCTTTTTTTGTATTCCATTTTTAAAGATAATAATTTAGAATAAAGCGTTCATGTTAA
>TU133916
caccacatcgattatatgcaacgcaggacaagctagataaactagtaatatcatcaaccatatgtagttaactagtgattatgttaagattgattgttttttataagataggtttaatgctagctagcaccttaccttggctccttgctgcactcgcataacaggtagtcagcctgccacccagtctcctcgtggagtgtaatgtaatcggccatgattaCCGATTtgttaccgattgttatgaaaacttgaaattggccctaattaatcgcccattccgattaattggtcgacctctagtctataGTGCGtaactcctgtctgtctctctgtgtctgaaggTGTTTGGAGAAGCAGAGTTTGTCAAATACAAGGAAGCCCTGAACGAACTGGCCTCTGTTGTGAAGAGCCACTCCAGTTCCACTAGTCTGGACCAGCATCACCAGTTAGCAGCTAAAGACTTGACCAGTACCCCAGagcccaccccctcctctcccccctcccaggTCACATACCTGCCGTCAGCTGGGCAACGCACCAAACGACCAAAACACTTCCTGGAACTCAAGAACTTTAAAGACAAGTACAACACCTTGGAAAGCACATTCTGAGAACTACAATCTCCTATGGCATAACACAAGAAACTACAATTCCCGACAACTTGCTGCCTCTGACAACTGCAACTCCCTACAACCCTGAGAACTTACAACTCCCTAGAAAACAACCTGAAAACTACAACAACTTCTCTGCTACTACTTTAAATCTGTTTTGTTGCGAGTACTGGACACTTTTCCTTCTCTATTTCCAAATTAGATAGCCTAGTGAAAagaacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggccgtcactgaaaataagaatttgttcttaactgacttgcctagttaaataaaggttcaataaaacggAAGTGAAGGTAGTGATAAGTAGAGCTCCTGGAGGTGACAGATACTGGGGTTTGTGGTAAAAGAAGAGGTTGGTGAGTTAGTTTAGTGAGAGACTTGTTAGTgccagcagagagagaagagacttgGTAGGGTTGGTACTTGGTACAGTTGGGAAGACTGGAGCACAGCAGGATTAACAGTAGCATAGCACAGCAGTATAGGAATGACAGTAACATTACGCTGCCCTACTAGTCCTGAGGAAAAACACTGCCTACTATCTATCATGCATCTCACATAATAAATAGTGCACTAGATTTAAGCTTATTTGACGTTAAACATCGTTGTGAACTTTTGCACAGACTTTGCAGGTAGATCATCATGTAGGGCTATGCAAAAGAGATGAGACCAGACAAGCTACATGCAGTTTCTATGCAGAATGCATTaatgcagtgtttcccaaacttggtcctggggacccGAAGTGGTGCACGTTTTgggttttgccctagcactacacaactgagtcaaataatcaactaatcatcaagctttgattatttgaatgagCTGTGTCGTCCTAGAGCAGAACCTGAAACGTACATctcttggggtccccaggactgagtttgggaaacgctgcattAATGCACAGTGTTAGAGTAAGACTTGTTTATAATGTGATCATCTGCTAACTAAGCTATTGATGGACTAACGTTATAGCAGACCAGCGTTCCTCACAATGGCcctggagagctacagtacaggctGGGCAGGCTTTTGTTCCCGCCTAGCACTAACACACCTCCAATCAGGCTGATTAGTAGAATCCGGTTAGTCACTGTTGAGCTGGAACAGTACAGAAGAACTATGGATTATTCCAGTATTACTGCTAGACATTTCCAGTATTATTGTCCTGTTGCCAGCACTTGTTTAGGGCAGAGCCATGTATTTACATATATATTGCTCTGGTTTAGGGCTAGTGTTACAAGGAAATGAACATGTTACCACATCTGATGGTTGTCTATTTGCTGCATAAAAATGATTATACTTTTTAGagtcaatgtttttttgttgttgctgaaatCTTTTTTTGTATTCCATTTTTAAAGATAATAATTTAGAATAAAGCGTTCA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939344.1 False 2418 mRNA 0.45 7 16023748 16035989
XM_036939353.1 False 2399 mRNA 0.45 7 16023749 16035989
TU133916 True 2061 lncRNA 0.45 2 16033826 16035983

Neighbor

gene id symbol gene type direction distance location
LOC118937786 NA coding upstream 197218 15820843 ~ 15826530 (+)
znf687a LOC106575274 coding upstream 221977 15787793 ~ 15801771 (+)
LOC110535991 LOC100194679 coding upstream 236329 15783609 ~ 15787419 (+)
LOC110535970 LOC106575371 coding upstream 240747 15759949 ~ 15783001 (+)
ecm1b ecm1 coding upstream 268453 15742330 ~ 15755295 (+)
LOC110536089 LOC106575512 coding downstream 72822 16108811 ~ 16117559 (+)
chrnb2 LOC106575520 coding downstream 97781 16133770 ~ 16173038 (+)
LOC110536177 LOC100286671 coding downstream 254156 16290145 ~ 16298549 (+)
LOC110512627 efna3 coding downstream 480092 16516081 ~ 16667428 (+)
LOC118936591 LOC106574320 coding downstream 697344 16733333 ~ 16747286 (+)
G116526 NA non-coding upstream 9821 16011994 ~ 16013927 (+)
G116514 NA non-coding upstream 36107 15987413 ~ 15987641 (+)
G116464 NA non-coding upstream 104660 15903649 ~ 15919088 (+)
G116454 il6ra non-coding upstream 105860 15879884 ~ 15917888 (+)
G116446 NA non-coding upstream 154911 15868638 ~ 15868837 (+)
G116536 NA non-coding downstream 25979 16061968 ~ 16062376 (+)
G116541 NA non-coding downstream 33319 16069308 ~ 16071179 (+)
G116542 NA non-coding downstream 37930 16073919 ~ 16075195 (+)
G116543 NA non-coding downstream 41045 16077034 ~ 16080072 (+)
G116545 LOC106575505 non-coding downstream 46027 16082016 ~ 16082650 (+)
LOC110535842 LOC106605985 other upstream 572060 15448845 ~ 15451856 (+)
LOC110535783 LOC106606004 other upstream 656959 15355848 ~ 15368210 (+)
G116224 NA other upstream 686046 15337430 ~ 15337702 (+)
LOC110535811 acbd7 other upstream 687390 15329572 ~ 15336358 (+)
G116207 NA other upstream 752139 15271202 ~ 15271609 (+)
G117048 NA other downstream 147697 16182890 ~ 16185784 (+)
LOC110536275 s10i other downstream 959721 16995630 ~ 16998361 (+)
G117704 NA other downstream 1014143 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 1037212 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 1364024 17395343 ~ 17421816 (+)

Expression


Co-expression Network