LOC110536110 (LOC106573847)


Basic Information

Item Value
gene id LOC110536110
gene name LOC106573847
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16199987 ~ 16201548 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939499.1
TCAACACACTCAACACCTCAGCTACCGGCAGCAGTGTCCAGTATTTTATCTACGTATTTATGATTTTTCAGTTCAATAacctctcctctgtgtctgtaTTGTATTCTGTTTAGTCCCATTAGAACACTACCTCTTCtccattcttcctctctctctgtcagtgatGGAGTCAGCCATTGGTGTACTCGTGTCCCAGTTCAAGGCGTTTGCTGGAAGTGATGGATCCTCAGACACACTGAGCAGAGATGAGTTCCAGAACCTGGTCAAAACACAACTCCCCAACTTCGTTAAGAACGCTGATGACCCAGCTGTCATCGACCGACTCATGGACTCAATTGACGAGAACAATGACGGAGAGCTCAACTTCCTGGAGTTCTGGCAGCTGATTGGACGACTAGCAAATCAACACGGCGGCTTTATCCAATAGGATGTCTCCATGTCTTGTTCTGTTACTACCATATGATTACAATGATAGGTTATTCTAGTGGTATGGTTATCCCCATGTTGTGTTTCTAAATGGTCAAGTGTTTGCTAAAGCTATGGAGGATTGGTCCAGCAAAATAAAACATGGATGAATCATACAACTATAGTATCTATGACTACCTGaccttagtctctctctctctctccctccctctctaaagcTATGGAGGATTGGTCCAGCAAAATAAAACATACAACTATAGTATCTATGACTACCTGaccttagtctctctctctctccctccctctctaaagcTATGGAGGATTGGTCCAGCAAAATAAAACATGGATGAATCATA
>XM_036939492.1
gagaaacttatCTTCACACGTACCACCTCAACACACTCAACACCTCAGCTACCGGCAGCAGTGTCCAGtgatGGAGTCAGCCATTGGTGTACTCGTGTCCCAGTTCAAGGCGTTTGCTGGAAGTGATGGATCCTCAGACACACTGAGCAGAGATGAGTTCCAGAACCTGGTCAAAACACAACTCCCCAACTTCGTTAAGAACGCTGATGACCCAGCTGTCATCGACCGACTCATGGACTCAATTGACGAGAACAATGACGGAGAGCTCAACTTCCTGGAGTTCTGGCAGCTGATTGGACGACTAGCAAATCAACACGGCGGCTTTATCCAATAGGATGTCTCCATGTCTTGTTCTGTTACTACCATATGATTACAATGATAGGTTATTCTAGTGGTATGGTTATCCCCATGTTGTGTTTCTAAATGGTCAAGTGTTTGCTAAAGCTATGGAGGATTGGTCCAGCAAAATAAAACATGGATGAATCATACAACTATAGTATCTATGACTACCTGaccttagtctctctctctctctccctccctctctaaagcTATGGAGGATTGGTCCAGCAAAATAAAACATACAACTATAGTATCTATGACTACCTGaccttagtctctctctctctccctccctctctaaagcTATGGAGGATTGGTCCAGCAAAATAAAACATGGATGAATCATA
>XM_036939496.1
cttgattTTATGAAGAGGAGGTGAGtataagagtgagagagagagagaaacttatCTTCACACGTACCACCTCAACACACTCAACACCTCAGCTACCGGCAGCAGTGTCCAGTCCCATTAGAACACTACCTCTTCtccattcttcctctctctctgtcagtgatGGAGTCAGCCATTGGTGTACTCGTGTCCCAGTTCAAGGCGTTTGCTGGAAGTGATGGATCCTCAGACACACTGAGCAGAGATGAGTTCCAGAACCTGGTCAAAACACAACTCCCCAACTTCGTTAAGAACGCTGATGACCCAGCTGTCATCGACCGACTCATGGACTCAATTGACGAGAACAATGACGGAGAGCTCAACTTCCTGGAGTTCTGGCAGCTGATTGGACGACTAGCAAATCAACACGGCGGCTTTATCCAATAGGATGTCTCCATGTCTTGTTCTGTTACTACCATATGATTACAATGATAGGTTATTCTAGTGGTATGGTTATCCCCATGTTGTGTTTCTAAATGGTCAAGTGTTTGCTAAAGCTATGGAGGATTGGTCCAGCAAAATAAAACATGGATGAATCATACAACTATAGTATCTATGACTACCTGaccttagtctctctctctctctccctccctctctaaagcTATGGAGGATTGGTCCAGCAAAATAAAACATACAACTATAGTATCTATGACTACCTGaccttagtctctctctctctccctccctctctaaagcTATGGAGGATTGGTCCAGCAAAATAAAACATGGATGAATCATA

Function

NR:

description
protein S100-A11-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939499.1 False 782 mRNA 0.43 3 16199987 16201477
XM_036939492.1 False 689 mRNA 0.45 3 16199987 16201504
XM_036939496.1 True 781 mRNA 0.44 3 16199987 16201548

Neighbor

gene id symbol gene type direction distance location
LOC110536103 s10ag coding downstream 4225 16189940 ~ 16195762 (-)
s100t LOC106575525 coding downstream 19377 16176859 ~ 16180610 (-)
LOC110534219 LOC106575505 coding downstream 91955 16079813 ~ 16108032 (-)
tuft1a LOC106575420 coding downstream 132688 16040245 ~ 16067299 (-)
si:dkey-92i15.4 LOC106595411 coding downstream 180546 16006770 ~ 16019441 (-)
LOC110536122 LOC106573839 coding upstream 1516 16203014 ~ 16208363 (-)
LOC110536154 LOC106575541 coding upstream 15923 16217471 ~ 16245556 (-)
LOC110536166 NA coding upstream 44221 16245769 ~ 16247419 (-)
LOC110536161 LOC106593005 coding upstream 47883 16249431 ~ 16289180 (-)
LOC110536191 LOC106605933 coding upstream 121870 16323418 ~ 16447506 (-)
G117327 NA non-coding downstream 10359 16189373 ~ 16189628 (-)
G117041 NA non-coding downstream 24462 16175228 ~ 16175525 (-)
G117040 NA non-coding downstream 25954 16171188 ~ 16174033 (-)
G117038 NA non-coding downstream 31636 16167955 ~ 16168351 (-)
G117008 NA non-coding downstream 50818 16102835 ~ 16149169 (-)
G117333 NA non-coding upstream 12488 16214036 ~ 16217352 (-)
G117354 NA non-coding upstream 55199 16256747 ~ 16259206 (-)
G117335 LOC100286671 non-coding upstream 90282 16291830 ~ 16298545 (-)
G117362 NA non-coding upstream 100000 16301548 ~ 16301846 (-)
G117407 NA non-coding upstream 212170 16413718 ~ 16414705 (-)
LOC110518702 atp8b2 other downstream 239985 15898225 ~ 15982097 (-)
LOC110536013 NA other downstream 342283 15778980 ~ 15857764 (-)
G116835 LOC100194679 other downstream 412572 15775325 ~ 15787415 (-)
G118273 NA other upstream 626123 16827671 ~ 16828022 (-)
G118303 NA other upstream 732021 16933569 ~ 16934290 (-)
G118319 NA other upstream 793972 16916621 ~ 16998362 (-)
G118392 NA other upstream 849633 17051181 ~ 17055124 (-)

Expression


Co-expression Network