LOC110520867 (LOC106606111)


Basic Information

Item Value
gene id LOC110520867
gene name LOC106606111
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16759736 ~ 16767223 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939646.1
CGGAAATACCGTGTCGTTAGAACGACGTCAACGTTGAGTCGCTGATGCAGATGTCAACTATTTGCACTATAGCGGATTTGATATTCACAGCGAAATTACTCACAATTTAGACACATACCTAGCTATCTAGGTAGTGCGCCACACATTCCCTTTTCCTATCTATGGAGTTTTTGCAGTTTCTATCATGGGCGTGCATCGTATTTACAGTCGGGATGTTCTCGACTGGACTgacggACCTGAAGAGGATGAGAGCTTCCAAAAGTGCAGATAACGTCCAgttcctccccttcctcaccaCATGCCTCAAtaacCTGGGCTGGCTGTATTATGGGATACTGAAGACGGATGGGACTCTGGTCCTGGTTAACACCATAGGAGCCTGTCTACAGTCCCTCTACATCCTCTGCTACTGCCAGTACACCAATGACAAGAGGCGAGTGACCTCTCAGACATTACTAGCAGGAGGAGTGGTCTGTGGAGGCTGGCTGTACTTCAGTGTTGTCCTGCCTCAGGGAGAGTCTCAGCTGGCCCAGCTAGGTCTCACCTGCAGCCTGTTCACTATCAGCATGTACCTGAGTCCACTCGCTGACCTGaTGGAGATCGTGCGTACTGGTAGTGTGGAGCGTTTGTCCTTCTCTTTGACTGTAGCTACCTTCctcacctcaacatcctggaCGCTCTATGGACTACAGCTGCAAGACTACtatatcatgGTTCCAAACACGCCAGGCATTGTGACCAGTCTCATCCGGTTCTTCCTGTTCTGGAGATTTGCATCTGTCAATCAAGGCGTGCCATCCTATAAGCTCATCGAAATTTAAGTGGCTGGAGACTCACACCAATGGTTACAAGGGAGAGAGATAACAGGCTTCTTGACCCTATCATGGTCAGGCTGTCAATCACTGATATTGTTACTCATATTGTAAATGATTCATGATCACTCCTACCCACCAGGGGTTTAAGAAGACTTTCTCCTCTCAAGGCAGAAGCTGTCCCTaatcacagatctaggatcagagtACCCTAGCAATGGGGGATGAAAAATGCTGAATAaatatctgaccctgtatcagtggttaGGGGCATCTTCCTCGTCTTTCTCCCTCCACCACTTCCTTTTTGTGCCTTCTGTACTAGTCTGGGACATCATTACTGAGAACTCAACCATGGGCGGGACAGTCCTGCCCTGTCAATCACAGTAGTCTCTGTTATCCAGTGGAAGGTTTTTTGCTCAGCATCAATGCGCTGCTATTGGTTGAATCGCTCTAACTAACAGGGCAGGATGATCCCATCTCTAGTGGGGCTCTAGTGGGGTGACACCCCCTCACCTTTATAGTTGACTTGTCTGTCCTCATCACTATGGTACCCTGTGAACTAGGGGTGAACAACTGTTCCTGGTAGCCACAGTATCTGCTTGGTTGTTATCCTTCTCTTTTAACTAGactgatgtacagtgcatttggaaagttttcagaccctttgtttttttccacattttgttacgttacagccttattctaaaatgtattcaattgtttattttcctcatcaatctt
>TU134955
CTTCCAAAAGTGCAGATAACGTCCAgttcctccccttcctcaccaCATGCCTCAAtaacCTGGGCTGGCTGTATTATGGGATACTGAAGACGGATGGGACTCTGGTCCTGGTTAACACCATAGGAGCCTGTCTACAGTCCCTCTACATCCTCTGCTACTGCCAGTACACCAATGACAAGAGGCGAGTGACCTCTCAGACATTACTAGCAGGAGGAGTGGTCTGTGGAGGCTGGCTGTACTTCAGTGTTGTCCTGCCTCAGGGAGAGTCTCAGCTGGCCCAGCTAGGTCTCACCTGCAGCCTGTTCACTATCAGCATGTACCTGAGTCCACT

Function

NR:

description
sugar transporter SWEET1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939646.1 False 1556 mRNA 0.47 6 16759736 16767223
TU134955 True 331 lncRNA 0.40 3 16760364 16763387

Neighbor

gene id symbol gene type direction distance location
LOC118936591 LOC106574320 coding upstream 12450 16733333 ~ 16747286 (+)
LOC110512627 efna3 coding upstream 92308 16516081 ~ 16667428 (+)
LOC110536177 LOC100286671 coding upstream 461187 16290145 ~ 16298549 (+)
chrnb2 LOC106575520 coding upstream 586698 16133770 ~ 16173038 (+)
LOC110536089 LOC106575512 coding upstream 642177 16108811 ~ 16117559 (+)
LOC110536210 LOC106574226 coding downstream 104319 16871542 ~ 16875899 (+)
LOC110536226 kcp2 coding downstream 108771 16875994 ~ 16879352 (+)
LOC110536234 LOC106575974 coding downstream 122355 16889578 ~ 16891184 (+)
LOC110534232 LOC106575974 coding downstream 129077 16896300 ~ 16897824 (+)
LOC118936967 LOC106606015 coding downstream 145627 16912850 ~ 16917506 (+)
G117254 NA non-coding upstream 96030 16661266 ~ 16663706 (+)
G117251 NA non-coding upstream 103302 16654764 ~ 16656434 (+)
G117250 NA non-coding upstream 108310 16648870 ~ 16651426 (+)
G117247 NA non-coding upstream 114825 16644201 ~ 16644911 (+)
G117210 NA non-coding upstream 203314 16555747 ~ 16556422 (+)
G117320 NA non-coding downstream 21277 16788500 ~ 16798757 (+)
G117322 NA non-coding downstream 22378 16789601 ~ 16800145 (+)
G117591 NA non-coding downstream 41938 16809161 ~ 16809372 (+)
G117594 NA non-coding downstream 49775 16816998 ~ 16817255 (+)
G117595 NA non-coding downstream 50133 16817356 ~ 16817652 (+)
G117048 NA other upstream 573952 16182890 ~ 16185784 (+)
LOC110535842 LOC106605985 other upstream 1308048 15448845 ~ 15451856 (+)
LOC110535783 LOC106606004 other upstream 1392947 15355848 ~ 15368210 (+)
G116224 NA other upstream 1422034 15337430 ~ 15337702 (+)
LOC110535811 acbd7 other upstream 1423378 15329572 ~ 15336358 (+)
LOC110536275 s10i other downstream 228487 16995630 ~ 16998361 (+)
G117704 NA other downstream 282909 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 305978 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 632790 17395343 ~ 17421816 (+)
G117735 NA other downstream 688542 17455765 ~ 17458022 (+)

Expression


Co-expression Network