LOC110536210 (LOC106574226)


Basic Information

Item Value
gene id LOC110536210
gene name LOC106574226
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16871542 ~ 16875899 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939656.1
GAAGAAGCGTTCCTCATCCTCAACTGGTCTGTTTCCGTCCTAAATCGTTAACGAAACCTTACGTTCTTGAATGCACCCCAGATTTAAGTTGTTGTAGCAACGAGCTAAGCCATGCCTGCAGCTGAAGTTTCTGTTGTTTCTAGTCCTAGACACAGTTGTTTCAATTAATGGTAAATACATCATCAAATGTGGCTAGTTTTTGGCTCCAAATATTGACTAACGAGTTGAACAACGTCGTATGTCCTGTATTGggtacattagctagctaagttagcactATCAAGGTACCATAGTACCCATACAGACACTTCTTTGCTGGGGCAATGTCTGCAGTCAGCAGCCTGGTCCCGGCTCGATTCCTGACTCTTACTGCTCACCTCGTCATCGTCATTCTGGTCACGGGACCAATACGACAAGGAGGACACCAAgTTGGTGGTAGCGTTGCCAGTCACCATGGGTCTGTTTGctatagagctggctggcttcttCTCTGGTGTGTCTATGTTCAACTGCACCCAGGGCCTCCTCTACACCATCCAtgcatccatctctccatccacacACTAGCGACTGCAGCCCATGCCAGTGCCTCTGTGGCTCTGCTGTTCTTTCTGTTTGAACAATGGGCATGTGAAATATACTGGTGGATCCTTGCTTTCTgcagAGATGGGAGTGTTGGACATACTGGGTTATTTTTGCCTTCtgcagTGTTCTCCCTGCATTTGTGGAGATCCTACTCTTCATCGCAGTGTTCGGACTGAAGAAGAAGCCACTATAACAGAGAGCAGTGTTTCACATCAATGTTCGGTCTGGAATGTAGTGTCCATCCTTCCCAGGACTTGTACACAGCTGTCCAAGTGACACATTGTGACTGTTCAATAGTGTCAAGGAGACATAGTTGATGTTAGTGATGCTGGATGGTGATCGTAGTGATAAAGACAACAGAGCTGGTTAAGATGTGGGTGGTCTAAGCTGCAGCATCCGATACGGTGACAGCATAGGTTCGAATCTGGCCTTCTGACTTTTGACACAGCCTTTATCCGTCAATAGtcagattattttatttatttattttaagctGTGGTGTTTGTTTCAGGATTGTGGGCGTTGTAGATGGAAACAGATACTATATGTACCAGGCAGAGAGGGCGATTGTGTGGACTCTGTGCGTTGTAGATGGAAACAGAGCTACTGTATGTACCAAGGCAGAGAGGACGATTTCTAAAAACTCCAGCGTATTGATCCTAATTGCTACGCTGAATGTATAGACACAAGTAACCATATTTCTCTTCACCATGCTAAATGGTCTTGTGTACCATAGGATTTTAGTACCACCTTTCTAAAACGTTTacctaaaaaatatatgttttatcaaGCTGAAGCTAtaccattccttccttccttttagTATGCTTTTTACATTAATTTAACATGTGGTGATATCTGATGGTTGCTACACCTCTATATGTCAAAGTGttattctttcttttttttacgaTTAAAGTATTTTACCTGTG
>XM_036939657.1
GAAGAAGCGTTCCTCATCCTCAACTGGTCTGTTTCCGTCCTAAATCGTTAACGAAACCTTACGTTCTTGAATGCACCCCAGATTTAAGTTGTTGTAGCAACGAGCTAAGCCATGCCTGCAGCTGAAGTTTCTGTTGTTTCTAGTCCTAGACACAGTTGTTTCAATTAATGGTAAATACATCATCAAATGTGGCTAGTTTTTGGCTCCAAATATTGACTAACGAGTTGAACAACGTCGTATGTCCTGTATTGggtacattagctagctaagttagcactATCAAGGTACCATAGTACCCATACAGACACTTCTTTGCTGGGGCAATGTCTGCAGTCAGCAGCCTGGTCCCGGCTCGATTCCTGACTCTTACTGCTCACCTCGTCATCGTCATTCTGGTCACGGGACCAATACGACAAGGAGGACACCAAgTTGGTGGTAGCGTTGCCAGTCACCATGGGTCTGTTTGctatagagctggctggcttcttCTCTGGTGTGTCTATGTTCAACTGCACCCAGGGCCTCCTCTACACCATCCAtgcatccatctctccatccacacACTAGCGACTGCAGCCCATGCCAGTGCCTCTGTGGCTCTGCTGTTCTTTCTGTTTGAACAATGGGCATGTGAAATATACTGGTGGATCCTTGCTTTCTgcagTGTTCTCCCTGCATTTGTGGAGATCCTACTCTTCATCGCAGTGTTCGGACTGAAGAAGAAGCCACTATAACAGAGAGCAGTGTTTCACATCAATGTTCGGTCTGGAATGTAGTGTCCATCCTTCCCAGGACTTGTACACAGCTGTCCAAGTGACACATTGTGACTGTTCAATAGTGTCAAGGAGACATAGTTGATGTTAGTGATGCTGGATGGTGATCGTAGTGATAAAGACAACAGAGCTGGTTAAGATGTGGGTGGTCTAAGCTGCAGCATCCGATACGGTGACAGCATAGGTTCGAATCTGGCCTTCTGACTTTTGACACAGCCTTTATCCGTCAATAGtcagattattttatttatttattttaagctGTGGTGTTTGTTTCAGGATTGTGGGCGTTGTAGATGGAAACAGATACTATATGTACCAGGCAGAGAGGGCGATTGTGTGGACTCTGTGCGTTGTAGATGGAAACAGAGCTACTGTATGTACCAAGGCAGAGAGGACGATTTCTAAAAACTCCAGCGTATTGATCCTAATTGCTACGCTGAATGTATAGACACAAGTAACCATATTTCTCTTCACCATGCTAAATGGTCTTGTGTACCATAGGATTTTAGTACCACCTTTCTAAAACGTTTacctaaaaaatatatgttttatcaaGCTGAAGCTAtaccattccttccttccttttagTATGCTTTTTACATTAATTTAACATGTGGTGATATCTGATGGTTGCTACACCTCTATATGTCAAAGTGttattctttcttttttttacgaTTAAAGTATTTTACCTGTG
>TU135320
CCCAGATTTAAGTTGTTGTAGCAACGAGCTAAGCCATGCCTGCAGCTGAAGTTTCTGTTGTTTCTAGTCCTAGACACAGTTGTTTCAATTAATGGTAAATACATCATCAAATGTGGCTAGTTTTTGGCTCCAAATATTGACTAACGAGTTGAACAACGTCGTATGTCCTGTATTGggtacattagctagctaagttagcactATCAAGGTACCATAGTACCCATACAGACACTTCTTTGCTGGGGCAATGTCTGCAGTCAGCAGCCTGGTCCCGGCTCGATTCCTGACTCTTACTGCTCACCTCGTCATCGTCATTCTGGTCACGGTAGAACAATGTTGAAGCTTGCCTGCCTTTGGATTTCACACAGGACCAATACGACAAGGAGGACACCAAgTTGGTGGTAGCGTTGCCAGTCACCATGGGTCTGTTTGctatagagctggctggcttcttCTCTGGTGTGTCTATGTTCAACTGCACCCAGGGCCTCCTCTCGTTGGCTGTCCACTGCAGTGCGtccatctccctgtctttctTTGTCTTCCAGAGATGGGAGTGTTGGACATACTGGGTTATTTTTGCCTTCtgcagTGTTCTCCCTGCATTTGTGGAGATCCTACTCTTCATCGCAGTGTTCGGACTGAAGAAGAAGCCACTATAACAGAGAGCAGTGTTTCACATCAATGTTCGGTCTGGAATGTAGTGTCCATCCTTCCCAGGACTTGTACACAGCTGTCCAAGTGACACATTGTGACTGTTCAATAGTGTCAAGGAGACATAGTTGATGTTAGTGATGCTGGATGGTGATCGTAGTGATAAAGACAACAGAGCTGGTTAAGATGTGGGTGGTCTAAGCTGCAGCATCCGATACGGTGACAGCATAGGTTCGAATCTGGCCTTCTGACTTTTGACACAGCCTTTATCCGTCAATAGtcagattattttatttatttattttaagctGTGGTGTTTGTTTCAGGATTGTGGGCGTTGTAGATGGAAACAGATACTATATGTACCAGGCAGAGAGGGCGATTGTGTGGACTCTGTGCGTTGTAGATGGAAACAGAGCTACTGTATGTACCAAGGCAGAGAGGACGATTTCTAAAAACTCCAGCGTATTGATCCTAATTGCTACGCTGAATGTATAGACACAAGTAACCATATTTCTCTTCACCATGCTAAATGGTCTTGTGTACCATAGGATTTTAGTACCACCTTTCTAAAACGTTTacctaaaaaatatatgttttatcaaGCTGAAGCTAtaccattccttccttccttttagTATGCTTTTTACATTAATTTAACATGTGGTGATATCTGATGGTTGCTACACCTCTATATGTCAAA

Function

NR:

description
transmembrane protein 107-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939656.1 False 1517 mRNA 0.43 7 16871542 16875899
XM_036939657.1 False 1473 mRNA 0.43 6 16871542 16875899
TU135320 True 1357 lncRNA 0.46 6 16871618 16875855

Neighbor

gene id symbol gene type direction distance location
LOC110520867 LOC106606111 coding upstream 104319 16759736 ~ 16767223 (+)
LOC118936591 LOC106574320 coding upstream 124256 16733333 ~ 16747286 (+)
LOC110512627 efna3 coding upstream 204114 16516081 ~ 16667428 (+)
LOC110536177 LOC100286671 coding upstream 572993 16290145 ~ 16298549 (+)
chrnb2 LOC106575520 coding upstream 698504 16133770 ~ 16173038 (+)
LOC110536226 kcp2 coding downstream 95 16875994 ~ 16879352 (+)
LOC110536234 LOC106575974 coding downstream 13679 16889578 ~ 16891184 (+)
LOC110534232 LOC106575974 coding downstream 20401 16896300 ~ 16897824 (+)
LOC118936967 LOC106606015 coding downstream 36951 16912850 ~ 16917506 (+)
LOC110536252 LOC100136538 coding downstream 56806 16932705 ~ 16934871 (+)
G117609 NA non-coding upstream 17815 16847610 ~ 16853727 (+)
G117610 NA non-coding upstream 21184 16848256 ~ 16850358 (+)
G117608 NA non-coding upstream 22288 16843365 ~ 16849254 (+)
G117602 NA non-coding upstream 42131 16829057 ~ 16829411 (+)
G117597 NA non-coding upstream 51259 16820044 ~ 16820283 (+)
G117632 NA non-coding downstream 11128 16887027 ~ 16893997 (+)
G117636 NA non-coding downstream 25380 16901279 ~ 16901489 (+)
G117638 NA non-coding downstream 27003 16902902 ~ 16903245 (+)
LOC110536287 LOC106605892 non-coding downstream 150979 17026878 ~ 17055189 (+)
G117701 NA non-coding downstream 165622 17041521 ~ 17042910 (+)
G117048 NA other upstream 685758 16182890 ~ 16185784 (+)
LOC110535842 LOC106605985 other upstream 1419854 15448845 ~ 15451856 (+)
LOC110535783 LOC106606004 other upstream 1504753 15355848 ~ 15368210 (+)
G116224 NA other upstream 1533840 15337430 ~ 15337702 (+)
LOC110535811 acbd7 other upstream 1535184 15329572 ~ 15336358 (+)
LOC110536275 s10i other downstream 119811 16995630 ~ 16998361 (+)
G117704 NA other downstream 174233 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 197302 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 524114 17395343 ~ 17421816 (+)
G117735 NA other downstream 579866 17455765 ~ 17458022 (+)

Expression


Co-expression Network