LOC110536234 (LOC106575974)


Basic Information

Item Value
gene id LOC110536234
gene name LOC106575974
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16889578 ~ 16891184 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939665.1
aataatacgaaatgctctgagaccaggctctCAGACATCGTCTCTTGGAAACACAGGCTAAAACACCCAATCAGATGGGCGTTGCCTGCACGCTTTAAATTCTCGTAGTTGCGCTACTTCCCCACCCTGTTCTCCAGCAGCTCTCAGTTCGtgTGTCAATATCTGCAGCCATGCCATCTGAGCTGGAGCGTTCCATGGAGTCCCTGATCATGGTGTTCCATCTCTATTCTGAAAAGGATGGTGATGGCAACACACTGAGCAAGAAGGAGCTCAAAGAGCTGATGAAGACAGAACTGGCCAGCTTCCTGAAGtcCCAGAAGGACCCAGCCGCCATAGACACGATCATGAAGGATCTGGACCAGAATGGTGATGGGAAGGTGAACTTTGAGGAGTTTGTCTCTCTGGTGGTGGGCCTCTCCATTGCCTGTGAACAGCTCTACCAGCTCCACACCCAGAAGGCTTCTGCCAAGAAGTGAGGGAGGACAGGACAAGGAGAAAGAGAAGCAGAGATGGATGCTTTTCTATATGTCATTTAGCTTTTCTATATGTCAAATAAGTCATTTTATAAATGTCTTACTGTTGTGAATAAACAGTGgctttcccactctc

Function

NR:

description
protein S100-A1-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939665.1 True 609 mRNA 0.48 3 16889578 16891184

Neighbor

gene id symbol gene type direction distance location
LOC110536226 kcp2 coding upstream 10226 16875994 ~ 16879352 (+)
LOC110536210 LOC106574226 coding upstream 13679 16871542 ~ 16875899 (+)
LOC110520867 LOC106606111 coding upstream 122355 16759736 ~ 16767223 (+)
LOC118936591 LOC106574320 coding upstream 142292 16733333 ~ 16747286 (+)
LOC110512627 efna3 coding upstream 222150 16516081 ~ 16667428 (+)
LOC110534232 LOC106575974 coding downstream 5116 16896300 ~ 16897824 (+)
LOC118936967 LOC106606015 coding downstream 21666 16912850 ~ 16917506 (+)
LOC110536252 LOC100136538 coding downstream 41521 16932705 ~ 16934871 (+)
LOC118936983 LOC106574877 coding downstream 57247 16948431 ~ 16950598 (+)
LOC118937935 LOC106606010 coding downstream 78870 16970054 ~ 16972862 (+)
G117609 NA non-coding upstream 35851 16847610 ~ 16853727 (+)
G117610 NA non-coding upstream 39220 16848256 ~ 16850358 (+)
G117608 NA non-coding upstream 40324 16843365 ~ 16849254 (+)
G117602 NA non-coding upstream 60167 16829057 ~ 16829411 (+)
G117636 NA non-coding downstream 10095 16901279 ~ 16901489 (+)
G117638 NA non-coding downstream 11718 16902902 ~ 16903245 (+)
LOC110536287 LOC106605892 non-coding downstream 135694 17026878 ~ 17055189 (+)
G117701 NA non-coding downstream 150337 17041521 ~ 17042910 (+)
G117708 NA non-coding downstream 173989 17065173 ~ 17065377 (+)
G117048 NA other upstream 703794 16182890 ~ 16185784 (+)
LOC110535842 LOC106605985 other upstream 1437890 15448845 ~ 15451856 (+)
LOC110535783 LOC106606004 other upstream 1522789 15355848 ~ 15368210 (+)
G116224 NA other upstream 1551876 15337430 ~ 15337702 (+)
LOC110535811 acbd7 other upstream 1553220 15329572 ~ 15336358 (+)
LOC110536275 s10i other downstream 104526 16995630 ~ 16998361 (+)
G117704 NA other downstream 158948 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 182017 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 508829 17395343 ~ 17421816 (+)
G117735 NA other downstream 564581 17455765 ~ 17458022 (+)

Expression


Co-expression Network