LOC110534232 (LOC106575974)


Basic Information

Item Value
gene id LOC110534232
gene name LOC106575974
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16896300 ~ 16897824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618966.2
CTGCACGCTTTAAATTTTCGTAGTTGCGCTACTTCCCCACCCTGTTCTCCAGCAGCTCTCAGTTCGtgTGTCAATATCTGCAGCCATGCCATCTGAGCTGGAGCGTTCCATGGAGTCCCTGATCATGGTGTTCCATCTCTATTCTGAAAAGGATGGTGATGGCAACACACTGAGCAAGAAGGAGCTCAAAGAGCTGATGAAGACAGAACTGGCCAGCTTCCTGAAGtcCCAGAAGGACCCAGCCGCCATAGACACGATCATGAAGGATCTGGACCAGAATGGTGATGGGAAGGTGAACTTTGAGGAGTTTGTCTCTCTGGTGGTGGGCCTCTCCATTGCCTGTGAACAGCTCTACCAGCTCCACACCCAGAATGCTTCTGCCAAGAAGTGAGGGAGGACAGGACAAGGAGAAAGAGAAGCAGAGATGGATGCTTTTCTATATGTCATTTTGCTTTTCTATATGTCAAATAAGTCATTTTATAAAAGTCTTACTGTTGTGAATAAACAGTGgctttcccactctc

Function

NR:

description
protein S100-A1-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618966.2 True 524 mRNA 0.48 3 16896300 16897824

Neighbor

gene id symbol gene type direction distance location
LOC110536234 LOC106575974 coding upstream 5116 16889578 ~ 16891184 (+)
LOC110536226 kcp2 coding upstream 16948 16875994 ~ 16879352 (+)
LOC110536210 LOC106574226 coding upstream 20401 16871542 ~ 16875899 (+)
LOC110520867 LOC106606111 coding upstream 129077 16759736 ~ 16767223 (+)
LOC118936591 LOC106574320 coding upstream 149014 16733333 ~ 16747286 (+)
LOC118936967 LOC106606015 coding downstream 15026 16912850 ~ 16917506 (+)
LOC110536252 LOC100136538 coding downstream 34881 16932705 ~ 16934871 (+)
LOC118936983 LOC106574877 coding downstream 50607 16948431 ~ 16950598 (+)
LOC118937935 LOC106606010 coding downstream 72230 16970054 ~ 16972862 (+)
LOC110536275 s10i coding downstream 97806 16995630 ~ 16998361 (+)
G117632 NA non-coding upstream 2303 16887027 ~ 16893997 (+)
G117609 NA non-coding upstream 42573 16847610 ~ 16853727 (+)
G117610 NA non-coding upstream 45942 16848256 ~ 16850358 (+)
G117608 NA non-coding upstream 47046 16843365 ~ 16849254 (+)
G117636 NA non-coding downstream 3455 16901279 ~ 16901489 (+)
G117638 NA non-coding downstream 5078 16902902 ~ 16903245 (+)
LOC110536287 LOC106605892 non-coding downstream 129054 17026878 ~ 17055189 (+)
G117701 NA non-coding downstream 143697 17041521 ~ 17042910 (+)
G117708 NA non-coding downstream 167349 17065173 ~ 17065377 (+)
G117048 NA other upstream 710516 16182890 ~ 16185784 (+)
LOC110535842 LOC106605985 other upstream 1444612 15448845 ~ 15451856 (+)
LOC110535783 LOC106606004 other upstream 1529511 15355848 ~ 15368210 (+)
G116224 NA other upstream 1558598 15337430 ~ 15337702 (+)
LOC110535811 acbd7 other upstream 1559942 15329572 ~ 15336358 (+)
G117704 NA other downstream 152308 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 175377 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 502189 17395343 ~ 17421816 (+)
G117735 NA other downstream 557941 17455765 ~ 17458022 (+)

Expression


Co-expression Network