LOC110536252 (LOC100136538)


Basic Information

Item Value
gene id LOC110536252
gene name LOC100136538
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16932705 ~ 16934871 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621938.2
ACACTCATAATCAGAAGGGCGTTGCCTGTTCTTTATACATTCCTGAACAATCTTTCCCACGGCTCTTGCGCAGTAGATTCAGCATCATTGGTATATATTCAGCAGTACCCTACTTCCCCACCCTGTTCTGATAGCGTCTCTCTTCTGTTTGTGTATCCTTCTCTGCAGCCATGCCGTCTCAGTTGGAGAGTTCCATGGAGTCCCTGATCACAGTGTTCCATCGCTATGCCGACAAGGACGGTGACTGCAACACACTGAGCAAGAAGGAGCTGAAAGAACTGATGCAGACAGAACTGGCCAGCTTCCTGAAGtCCCAGAAGGACCCAGCCGCCATAGACAAGATCATGAAGGATCTGGACCAGAATGGTGATGGGAAGGTGAACTTTGAGGAGTTTGTCTCCCTGGTGGTGGGCCTCTCCATCGCCTGTGAACAGATCTACCAGCTCCACACCCAGAAGGCTTCTGCCAAGAAGTGaaggaggacaggacagaaagaaagagaagcaGAGATGGCTGTTTTTATATGTGTCATTTTTATAAATAAGTCTTACTGTTGTGAATAAACACTGGCTTTCCCACTCTG

Function

NR:

description
s100 calcium binding protein, partial

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621938.2 True 583 mRNA 0.48 3 16932705 16934871

Neighbor

gene id symbol gene type direction distance location
LOC118936967 LOC106606015 coding upstream 15199 16912850 ~ 16917506 (+)
LOC110534232 LOC106575974 coding upstream 34881 16896300 ~ 16897824 (+)
LOC110536234 LOC106575974 coding upstream 41521 16889578 ~ 16891184 (+)
LOC110536226 kcp2 coding upstream 53353 16875994 ~ 16879352 (+)
LOC110536210 LOC106574226 coding upstream 56806 16871542 ~ 16875899 (+)
LOC118936983 LOC106574877 coding downstream 13560 16948431 ~ 16950598 (+)
LOC118937935 LOC106606010 coding downstream 35183 16970054 ~ 16972862 (+)
LOC110536275 s10i coding downstream 60759 16995630 ~ 16998361 (+)
LOC110536241 LOC106606012 coding downstream 63950 16998821 ~ 17001363 (+)
LOC110534239 LOC106594151 coding downstream 67479 17002350 ~ 17004595 (+)
G117638 NA non-coding upstream 29460 16902902 ~ 16903245 (+)
G117636 NA non-coding upstream 31216 16901279 ~ 16901489 (+)
G117632 NA non-coding upstream 38708 16887027 ~ 16893997 (+)
G117610 NA non-coding upstream 82347 16848256 ~ 16850358 (+)
LOC110536287 LOC106605892 non-coding downstream 92007 17026878 ~ 17055189 (+)
G117701 NA non-coding downstream 106650 17041521 ~ 17042910 (+)
G117708 NA non-coding downstream 130302 17065173 ~ 17065377 (+)
G117711 NA non-coding downstream 133714 17068585 ~ 17072226 (+)
G117750 NA non-coding downstream 229314 17164185 ~ 17164471 (+)
G117048 NA other upstream 746921 16182890 ~ 16185784 (+)
LOC110535842 LOC106605985 other upstream 1481017 15448845 ~ 15451856 (+)
LOC110535783 LOC106606004 other upstream 1565916 15355848 ~ 15368210 (+)
G116224 NA other upstream 1595003 15337430 ~ 15337702 (+)
LOC110535811 acbd7 other upstream 1596347 15329572 ~ 15336358 (+)
G117704 NA other downstream 115261 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 138330 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 465142 17395343 ~ 17421816 (+)
G117735 NA other downstream 520894 17455765 ~ 17458022 (+)

Expression


Co-expression Network