LOC118937935 (LOC106606010)


Basic Information

Item Value
gene id LOC118937935
gene name LOC106606010
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16970054 ~ 16972862 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939680.1
TTTCCATTTCCATCAGATAAAGAGgaacaaggagaggaaaggggaggggagagtggggtgtGGTAATCAATGTTTAAAACCAACagcccatccctctcttcctcactccctctctctctctttctctgactgtCCAACTCCTCGCACAACTTCGtcACCATGTCACAGGTCCAGCAGAGTATGGCATTGCTCATCTCAGCCTTCCACAAGTACTCTGGCAAGGAGGGCGACAAGACGACCCTGAGCAAGGGAGAACTCAAAGATCTGCTCAACGCTGAGCTTGGAGAGATCATGGGGAAAAACACTGACCAGGCAAAGGTTGACAAGATCTTCAAAGATCTGGACGCTAACGCAGATGGCAGTGTGGACTTCCAGGAGTACGTCACACTGGTGGCCTGCCTGACCATGATGTGCAATGAGTTCTTCACCAAGAAGTGAAACAGCTCCCCCTGCCCACTCTCCACAGAACAGCAGCTCTTGCTCCATGAGTGAATTCATGATAAGATTAGCAAGATCCTCCATGCAGGTTCAAAGGGACAGAGATGCAggtttacacacatacacagaaaaaGGGTTGGGTTGATTATACACaccacacatagacagacaggtgaaggacacagacacagacatgtacacacacagacatataggCTACTATCTCATGAGATGGAGAGGAAGCTCTTTGGTTTGtttaaagtgaaaaacaaaataAACTATTTTAATATGTTTGGAAGAAA

Function

NR:

description
ictacalcin-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23761 S100A4; protein S100-A4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939680.1 True 740 mRNA 0.47 3 16970054 16972862

Neighbor

gene id symbol gene type direction distance location
LOC118936983 LOC106574877 coding upstream 19456 16948431 ~ 16950598 (+)
LOC110536252 LOC100136538 coding upstream 35183 16932705 ~ 16934871 (+)
LOC118936967 LOC106606015 coding upstream 52548 16912850 ~ 16917506 (+)
LOC110534232 LOC106575974 coding upstream 72230 16896300 ~ 16897824 (+)
LOC110536234 LOC106575974 coding upstream 78870 16889578 ~ 16891184 (+)
LOC110536275 s10i coding downstream 22768 16995630 ~ 16998361 (+)
LOC110536241 LOC106606012 coding downstream 25959 16998821 ~ 17001363 (+)
LOC110534239 LOC106594151 coding downstream 29488 17002350 ~ 17004595 (+)
LOC110536287 LOC106605892 coding downstream 54909 17026878 ~ 17055189 (+)
LOC110534250 adar coding downstream 168802 17141664 ~ 17161398 (+)
G117638 NA non-coding upstream 66809 16902902 ~ 16903245 (+)
G117636 NA non-coding upstream 68565 16901279 ~ 16901489 (+)
G117632 NA non-coding upstream 76057 16887027 ~ 16893997 (+)
LOC110536210 LOC106574226 non-coding upstream 94199 16871542 ~ 16875899 (+)
G117610 NA non-coding upstream 119696 16848256 ~ 16850358 (+)
G117701 NA non-coding downstream 68659 17041521 ~ 17042910 (+)
G117708 NA non-coding downstream 92311 17065173 ~ 17065377 (+)
G117711 NA non-coding downstream 95723 17068585 ~ 17072226 (+)
G117750 NA non-coding downstream 191323 17164185 ~ 17164471 (+)
G117048 NA other upstream 784270 16182890 ~ 16185784 (+)
LOC110535842 LOC106605985 other upstream 1518366 15448845 ~ 15451856 (+)
LOC110535783 LOC106606004 other upstream 1603265 15355848 ~ 15368210 (+)
G116224 NA other upstream 1632352 15337430 ~ 15337702 (+)
LOC110535811 acbd7 other upstream 1633696 15329572 ~ 15336358 (+)
G117704 NA other downstream 77270 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 100339 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 427151 17395343 ~ 17421816 (+)
G117735 NA other downstream 482903 17455765 ~ 17458022 (+)

Expression


Co-expression Network