LOC110536275 (s10i)


Basic Information

Item Value
gene id LOC110536275
gene name s10i
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16995630 ~ 16998361 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621976.2
GCAGTTTCCATTTCCATCAGATAAAGAGgaacaaggagaggaaaggggagagtggGGTGTGGTAATCAATGTTTAAAACCAACagcccatccctctcttcctcactccccctctctctctttctctgactgtCCAACTCCTCGCACAACTTCGtcaCCATGTCACAGGTCCAGCAGGGTATGGCATTGCTCATCTCAGCCTTCCACAAGTACTCTGGCAAGGAGGGCGACAAGACGAGTCTGAGCAAGGGAGAACTCAAAGATCTGCTCAACGCTGAGCTTGGAGAGATCATGGGGAAAAACACTGACCAGGCAAAGGTTGACAAGATCTTCAAAGATCTGGACGCTAACGCAGATGGCAGTGTGGACTTCCAGGAGTACGTCACACTGGTGGCCTGCCTCACCATGGTGTGCAACGAGTTCTTCACCAAGAAGTGAAACAGCTCCCCCTGCCCACTCTCCACAGAACAGCAGCTCTTGCTCCATGAGTGAATTCATGATAAAATTAGCAAGATCCTCAATGCAGGTTCAGAGGGTCAGAGATGCAggtttacacacatacacaaaaataGGGTTGGGTTGATTATACACACCACACATAGACAGGTGAAGGacacagacatgtacacacacagacatataggCTACAATCTCATGAGATGGAGAGGaagctttttaaaaaaaatgtttttttacctttacttaactagacaagtcagttaagaacaaattcttattttcaatgacggggtaggaacagtgggttaactgcctgttcacgggcagaacgacagacctttcggttactagtccaactctctaaccactaggctaccttgccgccTTTGGTTTGTTTAAAGTGAAAAACGAAATAAACTATTTTAATATGTT
>XM_036939679.1
CTTGACTGCAAAAGTATGAATGACTTCAGGGTGTGCTTTGCAACAGTTGtcaCCATGTCACAGGTCCAGCAGGGTATGGCATTGCTCATCTCAGCCTTCCACAAGTACTCTGGCAAGGAGGGCGACAAGACGAGTCTGAGCAAGGGAGAACTCAAAGATCTGCTCAACGCTGAGCTTGGAGAGATCATGGGGAAAAACACTGACCAGGCAAAGGTTGACAAGATCTTCAAAGATCTGGACGCTAACGCAGATGGCAGTGTGGACTTCCAGGAGTACGTCACACTGGTGGCCTGCCTCACCATGGTGTGCAACGAGTTCTTCACCAAGAAGTGAAACAGCTCCCCCTGCCCACTCTCCACAGAACAGCAGCTCTTGCTCCATGAGTGAATTCATGATAAAATTAGCAAGATCCTCAATGCAGGTTCAGAGGGTCAGAGATGCAggtttacacacatacacaaaaataGGGTTGGGTTGATTATACACACCACACATAGACAGGTGAAGGacacagacatgtacacacacagacatataggCTACAATCTCATGAGATGGAGAGGaagctttttaaaaaaaatgtttttttacctttacttaactagacaagtcagttaagaacaaattcttattttcaatgacggggtaggaacagtgggttaactgcctgttcacgggcagaacgacagacctttcggttactagtccaactctctaaccactaggctaccttgccgccTTTGGTTTGTTTAAAGTGAAAAACGAAATAAACTATTTTAATATGTT
>TU135335
AACagcccatccctctcttcctcactccccctctctctctttctctgactgtCCAACTCCTCGCACAACTTCGtcaCCATGTCACAGGTCCAGCAGGGTATGGCATTGCTCATCTCAGCCTTCCACAAGTACTCTGGCAAGGAGGGCGACAAGACGAGTCTGAGCAAGGGAGAACTCAAAGATCTGCTCAACGCTGAGCTTGGAGAGATCATGGGGAAAAACACTGACCAGGCAAAGGTTGACAAGATCTTCAAAGATCTGGACGCTAACGCAGATGGCAGTGTGGACTTCCAGGAGTACGTCACACTGGTGGCCTGCCTCACCATGGTGTGCAACGAGTTCTTCACCAAGAAGTGAAACAGCTCCCCCTGCCCACTCTCCACAGAACAGCAGCTCTTGCTCCATGAGTGAATTCATGATAAAATTAGCAAGATCCTCAATGCAGGTTCAGAGGGTCAGAGATGCAggtttacacacatacacaaaaataGGGTTGGGTTGATTATACACACCACACATAGACAGGTGAAGGacacagacatgtacacacacagacatataggCTACAATCTCATGAGATGGAGAGGaagctttttaaaaaaaatgtttttttacctttacttaactagacaagtcagttaagaacaaattcttattttcaatgacggggtaggaacagtgggttaactgcctgttcacgggcagaacgacagacctttcggttactagtccaactctctaaccactaggctaccttgccgccTTTGGTTTGTTTAAAGTGAAAAACGAAATAAACTATTTTAATATGTTTGGAA

Function

NR:

description
ictacalcin-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621976.2 False 890 mRNA 0.46 3 16995630 16998356
XM_036939679.1 False 786 mRNA 0.45 3 16995963 16998356
TU135335 True 815 TUCP 0.46 3 16995710 16998361

Neighbor

gene id symbol gene type direction distance location
LOC118937935 LOC106606010 coding upstream 22768 16970054 ~ 16972862 (+)
LOC118936983 LOC106574877 coding upstream 45032 16948431 ~ 16950598 (+)
LOC110536252 LOC100136538 coding upstream 60759 16932705 ~ 16934871 (+)
LOC118936967 LOC106606015 coding upstream 78124 16912850 ~ 16917506 (+)
LOC110534232 LOC106575974 coding upstream 97806 16896300 ~ 16897824 (+)
LOC110536241 LOC106606012 coding downstream 465 16998821 ~ 17001363 (+)
LOC110534239 LOC106594151 coding downstream 3994 17002350 ~ 17004595 (+)
LOC110536287 LOC106605892 coding downstream 29415 17026878 ~ 17055189 (+)
LOC110534250 adar coding downstream 143308 17141664 ~ 17161398 (+)
LOC100135972 LOC100135972 coding downstream 171212 17169568 ~ 17322419 (+)
G117638 NA non-coding upstream 92385 16902902 ~ 16903245 (+)
G117636 NA non-coding upstream 94141 16901279 ~ 16901489 (+)
G117632 NA non-coding upstream 101633 16887027 ~ 16893997 (+)
LOC110536210 LOC106574226 non-coding upstream 119775 16871542 ~ 16875899 (+)
G117610 NA non-coding upstream 145272 16848256 ~ 16850358 (+)
G117701 NA non-coding downstream 43165 17041521 ~ 17042910 (+)
G117708 NA non-coding downstream 66817 17065173 ~ 17065377 (+)
G117711 NA non-coding downstream 70229 17068585 ~ 17072226 (+)
G117750 NA non-coding downstream 165829 17164185 ~ 17164471 (+)
G117048 NA other upstream 809846 16182890 ~ 16185784 (+)
LOC110535842 LOC106605985 other upstream 1543942 15448845 ~ 15451856 (+)
LOC110535783 LOC106606004 other upstream 1628841 15355848 ~ 15368210 (+)
G116224 NA other upstream 1657928 15337430 ~ 15337702 (+)
LOC110535811 acbd7 other upstream 1659272 15329572 ~ 15336358 (+)
G117704 NA other downstream 51776 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 74845 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 401657 17395343 ~ 17421816 (+)
G117735 NA other downstream 457409 17455765 ~ 17458022 (+)
LOC110536658 LOC106577300 other downstream 1459002 18457284 ~ 18481741 (+)
G117609 NA non-coding upstream 141983 16847610 ~ 16853727 (+)

Expression


Co-expression Network