LOC110536241 (LOC106606012)


Basic Information

Item Value
gene id LOC110536241
gene name LOC106606012
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16998821 ~ 17001363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621917.2
TTAGCCGTAGTCCAGCAATCGCCTAGTCTTAGATTAAATCTGCCGTAGAGTCCACCATTTACACAAGCACACGCAACGTAACATGCAAACCAAGGGGGGCCATTGTATAATTTCCTACTAACGAAGAAACCGGAAGTGTGATTGTTTTGTTCTGTAGAAGGTGTTATGGCGGCGCCAGTGGAGGGAATTTCAAAATTGAGCAGATCCTGCTAAATAGAGTTAATCTATCCTCATGTATTAACAGTGAAAACTACAAGAAACGTGTGAGCAGTCATTCGGGGCGCTTCCTCATAACATAACAGAGCCTTCACCCAAAGATAAAGACCCAGACTGGTGACCTAAGATGACCAGAGTAGGTCCCCTGCAGCAGCGTCCTCTAGCAGGGTGCAGTGACCCAGACATCTGGCTGGTCCCCCTGCCTGCCCCGGTGCCCCTGGTCCCTGCTAGCCTCCTGCGGTGCCCAGAACTGGacctgtctctccccctcagcCCAGACCCGCCACGGCCCAACCCGGCTAGCCTGCTGAGAGGACGCAGCCACCGGCAGGTGCGATTTGCCTCCGAGGAGCCTGTGGTTGACACGGTGATAGCAGAGCCTAGCAAAGACCCTCCACCTTGGCAATGCCCTGGACACTCCAGCAGTTACTCAAAGGGGAAAAGACTCCATGGTGGAGAACTGCGTTGGAGGGCAAGGTCAGCAACCAATGAGGAGGCTCCCTGTGAGGAGAGGGGTGGCAGCCTCCCTGAAGGGGCGGAGTTAAATACTACTCTGGCTCTGAGGGCTGAGCTAGATAACGTGGCAGGGGCAGAGTTTAACTCCCAGAAGGCCGTGCAGGAGCAACTACAGAAGTCAGACAGAACCAAGAACAGCATCAGCACCCGGGCTACAGAGGGGGTGAACGTCCCTCCATCCCAGCACCTCTACAGGGCATTGGTCAGTGTGAatgtggtggaggaggagctTATCAGCCAGGCTCTACGTGACAGGCTTCAGCTGGTCTCGCCCACATGCAGCCATGGCAACAAGaaaGAGGACAGTCCTGACCTGCAGGTTTTCTTCAGGGGGGATCTGCTGAGAGAGAAGCCCCTCCTACCAGGGGAGGAGATTACCATACCACGCCCCCAGCCCATCCCACGCCCCGCAGACACAACCTTCGACCTctaccacagacacacatgctGGGAGGCTggaccctgacacacacacacttactctgaACCTCTAGACTGAAAGGCCCTGTCCCAAAACTTAAGAAAAGCATTTTCCCTTctttccctccctacctctgtcATTCTCAGatataaatattatattttaAACTAATTTAAGATATTAAAGGAATAAACCTGTATCATGTTGATGATCGATCTTTA
>XM_021621926.2
GAATAAACGACATGATTGAATTTGCATAGctttagttaacgttagctagctaattagccAAACAAACCCtataacgttagctggctagtaGTACAACAagtaaagttagctggctaactgactggtgAACTTTCTAGCATGTCTGCTGTcgtcgttagctagctagttagctggctgtGTGCTGAAAGCTCCCACTGAATGGAATCTAGCTAGagatctaacgttagctagataacgTCACATCGTCATATCTGGTTGGAAGTGTAAAGTTAACGTTATTCAACCAACACTACAGATCCAACAATGTAACAGAGCCTTCACCCAAAGATAAAGACCCAGACTGGTGACCTAAGATGACCAGAGTAGGTCCCCTGCAGCAGCGTCCTCTAGCAGGGTGCAGTGACCCAGACATCTGGCTGGTCCCCCTGCCTGCCCCGGTGCCCCTGGTCCCTGCTAGCCTCCTGCGGTGCCCAGAACTGGacctgtctctccccctcagcCCAGACCCGCCACGGCCCAACCCGGCTAGCCTGCTGAGAGGACGCAGCCACCGGCAGGTGCGATTTGCCTCCGAGGAGCCTGTGGTTGACACGGTGATAGCAGAGCCTAGCAAAGACCCTCCACCTTGGCAATGCCCTGGACACTCCAGCAGTTACTCAAAGGGGAAAAGACTCCATGGTGGAGAACTGCGTTGGAGGGCAAGGTCAGCAACCAATGAGGAGGCTCCCTGTGAGGAGAGGGGTGGCAGCCTCCCTGAAGGGGCGGAGTTAAATACTACTCTGGCTCTGAGGGCTGAGCTAGATAACGTGGCAGGGGCAGAGTTTAACTCCCAGAAGGCCGTGCAGGAGCAACTACAGAAGTCAGACAGAACCAAGAACAGCATCAGCACCCGGGCTACAGAGGGGGTGAACGTCCCTCCATCCCAGCACCTCTACAGGGCATTGGTCAGTGTGAatgtggtggaggaggagctTATCAGCCAGGCTCTACGTGACAGGCTTCAGCTGGTCTCGCCCACATGCAGCCATGGCAACAAGaaaGAGGACAGTCCTGACCTGCAGGTTTTCTTCAGGGGGGATCTGCTGAGAGAGAAGCCCCTCCTACCAGGGGAGGAGATTACCATACCACGCCCCCAGCCCATCCCACGCCCCGCAGACACAACCTTCGACCTctaccacagacacacatgctGGGAGGCTggaccctgacacacacacacttactctgaACCTCTAGACTGAAAGGCCCTGTCCCAAAACTTAAGAAAAGCATTTTCCCTTctttccctccctacctctgtcATTCTCAGatataaatattatattttaAACTAATTTAAGATATTAAAGGAATAAACCTGTATCATGTTGATGATCGATCTTTA

Function

NR:

description
protein phosphatase 1 regulatory subunit 35-like

GO: NA

KEGG:

id description
K17574 PPP1R35; protein phosphatase 1 regulatory subunit 35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621917.2 False 1374 mRNA 0.53 6 16998821 17001363
XM_021621926.2 True 1384 mRNA 0.52 6 16999126 17001363

Neighbor

gene id symbol gene type direction distance location
LOC110536275 s10i coding upstream 465 16995630 ~ 16998361 (+)
LOC118937935 LOC106606010 coding upstream 25959 16970054 ~ 16972862 (+)
LOC118936983 LOC106574877 coding upstream 48223 16948431 ~ 16950598 (+)
LOC110536252 LOC100136538 coding upstream 63950 16932705 ~ 16934871 (+)
LOC118936967 LOC106606015 coding upstream 81315 16912850 ~ 16917506 (+)
LOC110534239 LOC106594151 coding downstream 987 17002350 ~ 17004595 (+)
LOC110536287 LOC106605892 coding downstream 26408 17026878 ~ 17055189 (+)
LOC110534250 adar coding downstream 140301 17141664 ~ 17161398 (+)
LOC100135972 LOC100135972 coding downstream 168205 17169568 ~ 17322419 (+)
LOC110520897 NA coding downstream 309765 17311128 ~ 17315827 (+)
G117638 NA non-coding upstream 95576 16902902 ~ 16903245 (+)
G117636 NA non-coding upstream 97332 16901279 ~ 16901489 (+)
G117632 NA non-coding upstream 104824 16887027 ~ 16893997 (+)
LOC110536210 LOC106574226 non-coding upstream 122966 16871542 ~ 16875899 (+)
G117610 NA non-coding upstream 148463 16848256 ~ 16850358 (+)
G117701 NA non-coding downstream 40158 17041521 ~ 17042910 (+)
G117708 NA non-coding downstream 63810 17065173 ~ 17065377 (+)
G117711 NA non-coding downstream 67222 17068585 ~ 17072226 (+)
G117750 NA non-coding downstream 162822 17164185 ~ 17164471 (+)
G117048 NA other upstream 813037 16182890 ~ 16185784 (+)
LOC110535842 LOC106605985 other upstream 1547133 15448845 ~ 15451856 (+)
LOC110535783 LOC106606004 other upstream 1632032 15355848 ~ 15368210 (+)
G116224 NA other upstream 1661119 15337430 ~ 15337702 (+)
G117704 NA other downstream 48769 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 71838 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 398650 17395343 ~ 17421816 (+)
G117735 NA other downstream 454402 17455765 ~ 17458022 (+)
LOC110536658 LOC106577300 other downstream 1455995 18457284 ~ 18481741 (+)

Expression


Co-expression Network