LOC110534239 (LOC106594151)


Basic Information

Item Value
gene id LOC110534239
gene name LOC106594151
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17002350 ~ 17004595 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939681.1
agtagcgaggctatatacagtagcgaggctatatacagtagcgaggctataactcatacatgtaatgttaactgactgatattctATGTATAAGatctaagcctgtgttaacctcagaccttaacGCTATTCTTTCCCCATTTAATTTCCCCaataggaatggctgaacgaaccagaggcacGCTTGTACCATCTcagctcacctctctctctcacacacacaccccagtctCTGAGACCTGGGCATCTCTCTCTGACCATGGACGTGTCAGCGCTGGGCAGTGGGAGCAGCTGTTCAGAGGATTGTGTGCTAGGGTCTGGCTGTCTGGAGGACTGTGGGAACCAGAGTGACCAGACTGACTGGGAATGGGAGGACTTCAGTGGGGCTGAGCTGGTGTGTGTGACAGCCGTGTGTGTGCTGCTGCTGGCCCTGGGCATCACAGGAAATATGTTAACCATCCTGGTAGTTTGGCTCCGGCCACACCTGAGAAGCACCACCTACCTCTACCTGAGTAGTATGGCCGTTTCCGACCTCCTCATACTGCTTCTGATGCCTTTAGATCTGTACTACAAGCTGTGGAGGTTCCAGCCCTGGGATCTGGGTGATGCAGTGTGTAAGCTGAGTGTGTTCATCAGTGAGAGTTGTACCTACTCCTCCATCCTCCACATCACCGCCCTTTCTCTGGAGCGCTACCTCGCTGTCTGTCGACCACTCACAGCCAAGACCCTGGTCACACGGACCCGCGTCCGCACTCTCATTGGCTGCCTGTGGGTTGTGGCCGTGATCAGCGCCGGGCCGGTGTTTGCTATAGTAGGGGTAGAGGAGCTggggggaggtgagggggagagcgAGTGTCGCTGTACGGACTACGCCGTCTCCTCAGGCCTGCTGGGGGCCATGATGTGGCTCTCCAACCTCTACTTCCTGGTGCCGCTGGGCATTCTGGGAGTTGTGTATGGTCTGATCGGCAGGAAGCTTTGGCTCCGCCCACAACGCAGCAGCCGAGACCGCGCCCAGCGACACACCATCAAGATGCTCGggaTGATCGTGCTGGCGTTTGTTCTGTGTTGGCTGCCGTTCCACGTTGGTCGGACGTTGTTCTCTATGACTCTGGGCTCCAGCGCTGATATGTACTACATCTCTCAGTACTTTAACCTGGTCTCCTTTGTGTTGTTCTACCTCAGTGCTGCTGTCAACCCTATCCTCTACAACACCATGTCAGCACGCTACCGCCACGCTGTCCGCAGCCTGCTGCGCTCACACACACCCCGCTCCCACCACCCCCCACTCACCCCACAACACTCTACCACCACTCTGtaactcaccccccccccccactcacccCACAACA

Function

NR:

description
PREDICTED: growth hormone secretagogue receptor type 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939681.1 True 1352 mRNA 0.56 4 17002350 17004595

Neighbor

gene id symbol gene type direction distance location
LOC110536241 LOC106606012 coding upstream 987 16998821 ~ 17001363 (+)
LOC110536275 s10i coding upstream 3994 16995630 ~ 16998361 (+)
LOC118937935 LOC106606010 coding upstream 29488 16970054 ~ 16972862 (+)
LOC118936983 LOC106574877 coding upstream 51752 16948431 ~ 16950598 (+)
LOC110536252 LOC100136538 coding upstream 67479 16932705 ~ 16934871 (+)
LOC110536287 LOC106605892 coding downstream 23176 17026878 ~ 17055189 (+)
LOC110534250 adar coding downstream 137069 17141664 ~ 17161398 (+)
LOC100135972 LOC100135972 coding downstream 164973 17169568 ~ 17322419 (+)
LOC110520897 NA coding downstream 306533 17311128 ~ 17315827 (+)
LOC110520882 rab13 coding downstream 378468 17383063 ~ 17394790 (+)
G117638 NA non-coding upstream 99105 16902902 ~ 16903245 (+)
G117636 NA non-coding upstream 100861 16901279 ~ 16901489 (+)
G117632 NA non-coding upstream 108353 16887027 ~ 16893997 (+)
LOC110536210 LOC106574226 non-coding upstream 126495 16871542 ~ 16875899 (+)
G117610 NA non-coding upstream 151992 16848256 ~ 16850358 (+)
G117701 NA non-coding downstream 36926 17041521 ~ 17042910 (+)
G117708 NA non-coding downstream 60578 17065173 ~ 17065377 (+)
G117711 NA non-coding downstream 63990 17068585 ~ 17072226 (+)
G117750 NA non-coding downstream 159590 17164185 ~ 17164471 (+)
G117048 NA other upstream 816566 16182890 ~ 16185784 (+)
LOC110535842 LOC106605985 other upstream 1550662 15448845 ~ 15451856 (+)
LOC110535783 LOC106606004 other upstream 1635561 15355848 ~ 15368210 (+)
G116224 NA other upstream 1664648 15337430 ~ 15337702 (+)
G117704 NA other downstream 45537 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 68606 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 395418 17395343 ~ 17421816 (+)
G117735 NA other downstream 451170 17455765 ~ 17458022 (+)
LOC110536658 LOC106577300 other downstream 1452763 18457284 ~ 18481741 (+)

Expression


Co-expression Network