LOC110534246 (LOC106605885)


Basic Information

Item Value
gene id LOC110534246
gene name LOC106605885
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17094247 ~ 17121323 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939694.1
ACTCTCTACCACTCACTGTCCGATTCTCCTACACTCTCTTACAAGTCATGAATGTGGATGAGAAAAACCAGATCCTCACCACTAATGCCTGGCTTCAGATGCAATGGTTTGACCACTACCTTCAGTGGAACCAGTCAGAGTACCCTGGAGTGAAAACCCTTCGCTTCACTACTGACCAGGTCTGGATACCTGATATACTACTGTACAAcagTGCTCATGATAAATTTGATGCCACCTTTAAGAGCTATGTGCTGGTCAACTCCAGTGGATTCTGTGAGTACCTACCTCCAGGTATTTTTAGCAGTGCGTGTGAAGTGGACGTGCGTTGGTTTCCCTTTGACGTCCAGCACTGTGAGCTGAAGTTTGGCTCGTGGACGTTTGACGGCTGGCTGCTGGACCTCCAGATGCAGGAGGCTGACCTGTCAGGATACATGTCCAATGGAGAGTGGGACCTGCTGGGTGTACCAGGTGATCGTCATGAGATATTTTATGAGTGCTGTACAGAGCCCTACTCTGACGTGACCTTTGTTGTGACCCTACGACGGAGAACTCTGTTCTACGCTCTCAACCTCCTCGTCCCCTGTGTTCTCATCTCCTCCTTGACACTGTTGGTGTTTCTAATGCCAgcccaatcgggggagaagatcGGTCTGggcatTACAATTCTTCTCTCTCAGACTTTCTTCATGTTACTGGTGGCTGAGATTATGCCAGCTACCTCAGACTGCATACCACTGATAGGTCAGTATTTTGTGAGTACCATGGTTACCGTAGGGATGTCAGTGGTGGCGACTGTAGTTGTACTTCAGTACCATCACCACGACCCCAACAGTGGAGACATGCCTCAATGGgttGAGTTGGTTCTACTCCAGTGGGTTCCCTGGTTTCTGAGGATGAAGTGTCCAGAAGAGTGGGGTGAGCTCACACCCCAACACAGCCCCTCCAGCCCCCAGACCAAGACCTGCTCCTctgcccccaccaccaccaccccagcccCCTTAACCTTCCCCCAGAGCCTCACCTCTCTGCAGGCCAGTCTAAGACAGCCCAGCCAACCCCTACCACACCCACCTTCCAACCCTACCCTCCAGTCCTATCCCAACCATAACCCAAACCTCCAGCCTAATATCCACCTTAACCCAAATCGATATCCCCAGCCCCTTCTTAACCTACACCCCAACCTACACCCCAATCTCCCCTCCATCCCCCACGCTCAGCCCAATGGACATCTGCCATACATGGGCTTCCAGAGTCCTCCTGAACCTGACCCTGCTGtcacctggagaggaggaagaggaggaggaggagaagaaagaagggGTTCTGACACCCgcatcctccaccaccacccaccctccTCCATAATGTGGGTAGCCCCCTGCCACAACCCCCCACATCTCCAGACCCTGACCCCTCATCCTCAGGTTCCAGCTGTGTGGAGTATAGGGCTGGGGCAAGTGGAGTGGGTACTTGCCATGCCCAGGTCAGGGTGTTCCAGGCTGGGGAAGCAGAGACCCAGCTCCAGGCCCTGCTGACGGAGGTGCGGTTCCTGGCCGAGGGTCTCCGTGAGCAGGACCGCAGGTTTTGCCGCCCTGActctgtctcctgttccacatctcaccaccctgCTACCTTGTTCTGGACTCACCACACCACCTCTCCCTTGGATTCCCATCCAGACCTGTTTCCTCTGTCCCAACCCAGCtcactccaaccccagcctccacTTCTGGTTTCCTACAACTCATCTGAGCTTCCCTGGATCTGCACTTCATTTCTCTCTGTGTACAATAAATATattggttcattca
>TU136386
TGACAAGAGAATTGGTGTGATCCAATAGCTCACATAACCGTGGTTACATACGTAACCATCATTATGTAGTAATATATTGATCACTCCAATATGGTATCACAATACCAGATAAATCGGTGAACTAGGCCAGGCCAGACAAGAGCAAAATCCCGTAGGACTGAGCTCAGGGCAGTCATTGTTGCTGTGTCCCTTCATCCCCTTCCAGGGAAGTGGGGTCAACACCCAACAAGGCCGTCCCGACCTGGTTGGTGGCAGCAACATTGACTCGATAGTACCTAGGAAAAGTGCTAGACGATGCctgtgtcacatctgctcctgccacacccCCTAGTGGTCATCCGGTGTCTGCTTGACCTGCAGCCATTCCCCAGaacaccctttctctctctttccccctccctttctgtttgtgtgattgtgtggttggagacaggtgtgctggattcagagcagatccctaccagctgcaactcgttccattatcaagacctctacaaatactcagtcctgccacttccactctgtcagatcgtaatctctgctcaTTTTGCCGCCCTGActctgtctcctgttccacatctcaccaccctgCTACCTTGTTCTGGACTCACCACACCACCTCTCCCTTGGATTCCCATCCAGACCTGTTTCCTCTGTCCCAACCCAGCtcactccaaccccagcctc

Function

NR:

description
uncharacterized protein LOC110487741, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939694.1 False 1811 mRNA 0.54 10 17094247 17121323
TU136386 True 687 TUCP 0.51 2 17094334 17095116

Neighbor

gene id symbol gene type direction distance location
LOC110536202 LOC105024462 coding downstream 223881 16835619 ~ 16870366 (-)
LOC118937862 NA coding downstream 548868 16544642 ~ 16545379 (-)
LOC118937856 NA coding downstream 550026 16543484 ~ 16544221 (-)
LOC110536191 LOC106605933 coding downstream 646741 16323418 ~ 16447506 (-)
LOC110520880 LOC106605923 coding upstream 256689 17378012 ~ 17382684 (-)
LOC118944171 NA coding upstream 259496 17380819 ~ 17380955 (-)
LOC118944170 NA coding upstream 259930 17381253 ~ 17381388 (-)
LOC110520799 ash1l coding upstream 334404 17455727 ~ 17484284 (-)
rnf115 LOC106591015 coding upstream 393761 17515084 ~ 17523082 (-)
G118396 NA non-coding downstream 32324 17060832 ~ 17061923 (-)
G118395 NA non-coding downstream 34683 17058452 ~ 17059564 (-)
G118393 NA non-coding downstream 37696 17056323 ~ 17056551 (-)
G118392 NA non-coding downstream 39123 17051181 ~ 17055124 (-)
G118371 NA non-coding downstream 80383 17013454 ~ 17013864 (-)
G118435 NA non-coding upstream 26869 17148192 ~ 17149532 (-)
G118398 adar non-coding upstream 30665 17151988 ~ 17161387 (-)
G118436 NA non-coding upstream 37273 17158596 ~ 17159061 (-)
G118454 NA non-coding upstream 110218 17231541 ~ 17236747 (-)
G118455 LOC106562530 non-coding upstream 122191 17243514 ~ 17250649 (-)
G118319 NA other downstream 96154 16916621 ~ 16998362 (-)
G118303 NA other downstream 159957 16933569 ~ 16934290 (-)
G118273 NA other downstream 266225 16827671 ~ 16828022 (-)
LOC110536122 LOC106573839 other downstream 888830 16203014 ~ 16208363 (-)
G118456 LOC100380853 other upstream 122801 17244124 ~ 17252276 (-)
G118494 NA other upstream 209792 17331115 ~ 17332028 (-)
LOC110536309 LOC106574682 other upstream 544007 17663193 ~ 17666667 (-)
G118606 NA other upstream 560699 17682022 ~ 17710023 (-)

Expression


Co-expression Network