LOC100135972 (LOC100135972)


Basic Information

Item Value
gene id LOC100135972
gene name LOC100135972
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17169568 ~ 17322419 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990388.1
AGAGCAAGCGAAAGAGAGTGAAGTTGAGAGAGACATATTCGGAGAGACAGTGTGAGCGATAGAATGAGTGAGTGAGGTAAAGGAAGAGTTGCATAGTAAATCACATTTGTCATTTATAGGCTACCTTTTTTTTTAGCATAGCGTGTTTGCATGTAGATGTCGAGTAGTCTAGCGATTCAGTTATTTTATATGGTGAGAATGCTGACGGAGATTTTCATATCAACAGTAGGTTCATAATATAATCATGAAAGATTATTCAGTTCTCTCATTTTTAAGGACATTTGAAATAATCGATATGCGTGATATCAATTCATTGATCCCTGGACTGACGGAGATAAAGACTGATTGATTTTACAACGGCGAATTGAGGGAAGGAATCATCCAGTacagagggaaggaagggaaCCAGTGAATTATTTGGGAGAAATCAAAGCGCTCCGTCTCATGTGAGGACCTGTCGCTGGTCTCGCACCTAGAAGAAGGGGAGCAAAAGATGATGGAATGGCCGTGACAACATGAAAAAGAAAAAGTGTGGGGGTCTATTTTCATCCAGCCAGTGATTCAACACGACTGACCTGGGGgacagagaaggggaagagaagGTAGAGAGTGGCCTGTCGCCCTCCGGCCCCCACCATggagccccctccctctctgagcTTGACTCTCCTGGGAGGCAGTGAGGACGAGGACCCGCGTTTCCCCCTCCCTCTGAGTGGAATCTCCCACTCCTCCATGACCGGCAACTACCCGGGATCAAACCACTCCAACCACAGGGGGGGATCCAGCCTGGACCGGCTGAATGGGTCCCCCACTACACCTAACATGCCCAAGGCCTCCCTCCCCAAACTGCCTCTGTCCTCAGTGGGGGGTCAacccctgccccccctccccaatGCCCTTCACCCCACCAGCACCCCTCTATCCTCGTGCCTGGGTTCCCAGCACAGCCTGAGTGGAGACAACTCCCCAGTCTACAACGCCCTCTTTTACTCCTCACACTCCCCttccatggagagagagagggacagggatagagagagggacagggatagagagaggggatgtaaGCACCGCCAGGCCAGCCCGCTGGTCCATCGGAGAGACAGCAACCCTTTCACAGAGATCGCCATGAGCTCCTGTAAATACACAGGCGGCGTGATGAAACCTCTCAGTCGCCTCAGCGCCTCCAGACGCAACCTCATCGAATCAGACAGCGGCAGCGACACCAAAGAGGGCGGGGCAGCACCTGTTACCGGCACAACTGCCATTGGAGGGCGGGACCGGGACAGAGAGGCTCCACCCACTTCCTCATCCTTGCCATCCTCCAATCAACCAACCCAGAATCCTCCAGAGATAGTGATCTCATCAAAAGAGGACTCGCCGTACGCGAGGGGTTATGATATCACCGACTCATCCTCCAATCAGATGTCAATATACCATCAGAACCACGCCTTGGTGGGGAGTAGGGGAGGTTTAAGCAGTGCAGGGGGCACAGGAGGGGGTGTAGGGGGGAGCAGGCAGGGAGGTGTAGGAGTTGTTGGGGCTGTAGGGCCGAGGGGGAGCTGCTCCAAGGCTTCTAGTTCTAAACGTAAGAACCAGAACATTGGTTATAAACTGGGCCACCGGAGGGCGCTGTTCGAAAAGAGgaagaggctgagtgactacgcACTCATTTTCGGAATGTTTGGCATCGTCGTCATGGTGATCGAGACAGAGCTGTCCTGGGGCGTTTACAACAAGAGCTCCATGTACTCTCTGGCCTTGAAGTGTCTGATCAGCCTGTCTACAGTCATACTGCTGGGCCTCATCATAGCCTATCATGCACGAGAagtccagCTCTTCGTCATCGACAACGGAGCGGACGACTGGCGCATCGCCATGACGTTGAATCGGGTGTTGCTGATATCGTTGGAGCTACTGGTGTCAGCGGTGCATCCGGTGCCCGGGGACTTTAAGTTCCAGTGGCGGGCACGTCTGGCGTTCTCTTACGCCCCGTCCCAGGCTGAGGCTGACCTGGACATGGTGCTGAGTGTTCCCATGTTCCTCCGCCTCTACCTCATCGCCCGCGTCATGCTGCTGCACAGCAAACTGTTCACTGATGCCTCCTCGCGGAGCATAGGGGCCCTCaataagGTGCACTTTAACACAAGGTTTGTGATGAAGACTCTGATGACCATCTGTCCAGGCACTGTTCTCCTGGTCTTCAGCATCTCACTGTGGATCATCGCTGCCTGGACCGTACGAGTGTGTGAGAGgtaTCATGATGCCCAGGATGTGACCAGTAACTTCCTGGGGGCGATGTGGCTCATCTCTATCACCTTCCTGTCTATTGGCTACGGAGACATGGTCCCTCACACGTACTGTGGCAAAGGAGTCTGTTTACTAACCGGCATCATGggtgcGGGCTGTACAGCTCTGGTGGTTGCCGTGGTAGCAAGGAAGCTGGAGTTGACCAAGGCGGAGAAACACGTCCACAACTTCATGATGGACACACAACTCACCAagaggATAAAAAATGCTGCGGCCAACGTTCTGAGGGAGACTTGGCTCATCTACAAACACACCAAACTACAGAAGAAGATTGACCACTCCAGAGTCCGCAAACACCAGAGGAAGTTCCTGCAGGCCATCCACCAACTGCGTAGTGTGAAGATGGAGCAGAGGAAACTGAGTGATCAGGCCAACACTCTGGTGGACCTCTcaaagATGCAAAGTGTGATGTACGAGCTGATGTCGGAGCTGAACGATCGCAGTGAGGACCTGGAGCGGCAGATGCTGTCTCTGGAAACACGGGTGGAACAGCTGACCGCCGGCTTCAGTGCCCTGCCTGCCCACCTGTCTGCCACGCTGTCTGCCCAGCACACCACCTTGCTCCACCTGCTCCGAGAGAGggactacagaggaggaggatggggagggggagTTGCAGGTGGAGGAGGGACAGCCCTGGTCCCTGTTGCTCAGCTGGCCCCTGCCCATGCCCTGACCCCAAGCCCAAACCTGGCCCCAGAGCCACAGCAGCCCCCAGAAGGAACCATAGAGGGTAGCACTAGTCCCAATACTAGCACCTCCAGTtgttgaagagaggaggaggagaggatgggaagtGGAAAGAAGAggtgagggtagaggaggagatagatgGGCCAGTAGGAATACGGGATGAGGAGGTCAGCCCTAATAATTGCAACTTCAGATGctgcagagaggaggagggagggggggtaagGGAGGGCAGCCAGAAGCCCAACACTAGCTCATCCAGATGCTAAggaaaggagtagagaggaggggtgggataGGGGAGGAAAATAGAGGAGtgggagaaatgggggagggcGAAGGAAAGGATCACAGATAAGAggctgtgagagggagggagggatgggaggtagACAAGGTGAGGGATAGGAGAGCCAAGGAAGTGGAGggaggttgggagagagagaaggagatggaaacggagaggggggaaagggggaggaagggggaaacAGATAACCAAGACTAATTACAGAGGTCTTTAATGGAATCCAATCTAATGACAGGAAAACGTCTTCCTCTCTTTTTCCATTcgtccctctctatccctctttctcttcatctctttctctccctccatctctcgccctcttccctcccatccctccatcaggaatgattgactatgactttttgtCCTTTTGATCTATTTTCTATCTAACTGCTACTTGTGTGGTAACGAGCATCCCTTTAACTAACCATTTAATCAACGACCATAATACATactaaacaccacacacacacacacacacacacacacactctccatgtAGTATGCCTaccttttaacacacacacacacacacactctccatgtGGTATGCCTACCttttaacacacacatacacacacaccatggcaaCATAAACACACCACAACAAAAtacacagcaaacacacacacacacacaaaatagcacacaATATCGCGCAGCATACTATAGTAGACTATAAAACACTATAGTACAGCCTATACTATAGCCTATTACTGCCAAGCAGACAATGCACTAAGTCCAACTGAAAAGAACATACTGCCAGGCATTTATTACTTGACACAGAGCATAGACACGGTCCAAGGAAACACTACTGCCATATTTCCTTATGCACACGTCCCCAAAACTCTGTTTTAATGAATGTAtgctgtacatttcaaaccaCAAGCACACCGTTTGCACAGGGGCACAGATATGCCTAAACCCACACACATATACGCTGAACCACACCCACattcggacacacacacacacaatctaccaAAGTGCTCTCTCTCAAATGGACTACAAAAGAGAGGCAGAAGAGGATGTCACTggggagatgggaagaggagtTTCAGATTTCCTGACAATGTTTTTCAAGGAACATTGGATTTGGACTAGTACTAGTGCTTTGTGGACGGCACTTTTCACTGTGCTCGATGGACTGCCATAGACAGGGAATTAAGGAATATTAACCAGACAAAGGATACAGGCCATGGCAAGAGAGAAACGGTTGCTTACAAAACTTAACCCTATAGAGGGAGAGACTATATATCTGAGAGAATAATTATTATGATGTGATGGAATAAGATATTATTTTTCTTCTGTAAGCCCTTTCTACGGAGACCAATTTGAAAACTGTCTTATAGTGACATTCTGTGGCCGGAATACTGAATTACACCCGCTTGGAATATTGTACTGTACAGTAAGTATACTGTTACTGAAATCTACATAGGTTTGTATTGCTCAGTCTTTTCTACCATTACGATTTAACGGTTATAGCTAATAtctactattattatactatagtattctTCTCATTCGTCCTGACAATTAATGataaatgtattaataaaaaactttaataataataaatcatgGACAAGGGAGGTGCGTTTGAGGGTGAAATGATTTTGTAATTTTATTTTATCAGAGATAATTAATAAAGTATATATCTATATAACATCA
>NM_001124312.1
ATGCCCAAGGCCTCCCTCCCCAAACTGCCTCTGTCCTCAGTGGGGGGTCAacccctgccccccctccccaatGCCCTTCACCCCACCAGCACCCCTCTATCCTCGTGCCTGGGTTCCCAGCACAGCCTGAGTGGAGACAACTCCCCAGTCTACAACGCCCTCTTTTACTCCTCACACTCCCCttccatggagagagagagggacagggatagagagagggacagggatagagagaggggatgtaaGCACCGCCAGGCCAGCCCGCTGGTCCATCGGAGAGACAGCAACCCTTTCACAGAGATCGCCATGAGCTCCTGTAAATACACAGGCGGCGTGATGAAACCTCTCAGTCGCCTCAGCGCCTCAGACGCAACCTCATCGAATCAGACAGCGGCAGCGACACCAAAGAGGGCGGGGCAGCACCTGTTACCGGCACAACTGCCATTGGAGGGCGGGACCGGGACAGAGAGGCTCCACCCACTTCCTATCCTTGCCATCCTCCAATCAACCAACCCAGAATCCTCCAGAGATAGTGATTCATCAAAAGAGGACTCGCCGTACGCGAGGGGTTATGATATCACCGACTCATCCTCCAATCAGATGTCAATATACCATCAGAACCACGCCTTGGTGGGGAGTAGGGGAGGTTTAAGCAGTGCAGGGGGCACAGGAGGGGGTGTAGGGGGGAGCAGGCAGGGAGGTGTAGGAGTTGTTGGGGCTGTAGGGCCGAGGGGGAGCTGCTCCAAGGCTTCTAGTTCTAAACGTAAGAACCAGAACATTGGTTATAAACTGGGCCACCGGAGGGCGCTGTTCGAAAAGAGgaagaggctgagtgactacgcACTCATTTTCGGAATGTTTGGCATCGTCGTCATGGTGATCGAGACAGAGCTGTCCTGGGGCGTTTACAACAAGAGCTCCATGTACTCTCTGGCCTTGAAGTGTCTGATCAGCCTGTCTACAGTCATACTGCTGGGCCTCATCATAGCCTATCATGCACGAGAagtccagCTCTTCGTCATCGACAACGGAGCGGACGACTGGCGCATCGCCATGACGTTGAATCGGGTGTTGCTGATATCGTTGGAGCTACTGGTGTCAGCGGTGCATCCGGTGCCCGGGGACTTTAAGTTCCAGTGGCGGGCACGTCTGGCGTTCTCTTACGCCCCGTCCCAGGCTGAGGCTGACCTGGACATGGTGCTGAGTGTTCCCATGTTCCTCCGCCTCTACCTCATCGCCCGCGTCATGCTGCTGCACAGCAAACTGTTCACTGATGCCTCCTCGCGGAGCATAGGGGCCCTCaataagGTGCACTTTAACACAAGGTTTGTGATGAAGACTCTGATGACCATCTGTCCAGGCACTGTTCTCCTGGTCTTCAGCATCTCACTGTGGATCATCGCTGCCTGGACCGTACGAGTGTGTGAGAGgtaTCATGATGCCCAGGATGTGACCAGTAACTTCCTGGGGGCGATGTGGCTCATCTCTATCACCTTCCTGTCTATTGGCTACGGAGACATGGTCCCTCACACGTACTGTGGCAAAGGAGTCTGTTTACTAACCGGCATCATGggtgcGGGCTGTACAGCTCTGGTGGTTGCCGTGGTAGCAAGGAAGCTGGAGTTGACCAAGGCGGAGAAACACGTCCACAACTTCATGATGGACACACAACTCACCAagaggATAAAAAATGCTGCGGCCAACGTTCTGAGGGAGACTTGGCTCATCTACAAACACACCAAACTACAGAAGAAGATTGACCACTCCAGAGTCCGCAAACACCAGAGGAAGTTCCTGCAGGCCATCCACCAACTGCGTAGTGTGAAGATGGAGCAGAGGAAACTGAGTGATCAGGCCAACACTCTGGTGGACCTCTcaaagATGCAAAGTGTGATGTACGAGCTGATGTCGGAGCTGAACGATCGCAGTGAGGACCTGGAGCGGCAGATGCTGTCTCTGGAAACACGGGTGGAACAGCTGACCGCCGGCTTCAGTGCCCTGCCTGCCCACCTGTCTGCCACGCTGTCTGCCCAGCACACCACCTTGCTCCACCTGCTCCGAGAGAGggactacagaggaggaggatggggaggggagTTGCAGGTGGAGGAGGGACAGCCCTGGTCCCTGTTGCTCAGGGCCCCTGCCCATGCCCTGACCCCAAGCCCAAACCTGGCCCCAGAGCCACAGCAGCCCCCAGAAGGAACCATAGAGGGTAGCACTAGTCCCAATACTAGCACCTCCAGTtgttga

Function

NR:

description
potassium channel TSK3

GO: NA

KEGG:

id description
K04944 KCNN3, KCA2.3; potassium intermediate/small conductance calcium-activated channel subfamily N member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990388.1 False 4987 mRNA 0.50 10 17169568 17322419
NM_001124312.1 True 2253 mRNA 0.57 14 17171041 17320516

Neighbor

gene id symbol gene type direction distance location
LOC110534250 adar coding upstream 8170 17141664 ~ 17161398 (+)
LOC110536287 LOC106605892 coding upstream 114379 17026878 ~ 17055189 (+)
LOC110534239 LOC106594151 coding upstream 164973 17002350 ~ 17004595 (+)
LOC110536241 LOC106606012 coding upstream 168205 16998821 ~ 17001363 (+)
LOC110536275 s10i coding upstream 171212 16995630 ~ 16998361 (+)
LOC110520882 rab13 coding downstream 60644 17383063 ~ 17394790 (+)
LOC110520798 fam189b coding downstream 72924 17395343 ~ 17421816 (+)
fdps LOC106605924 coding downstream 99637 17422056 ~ 17425996 (+)
rusc1 LOC106605889 coding downstream 104013 17426432 ~ 17452486 (+)
dap3 LOC106605893 coding downstream 162406 17484825 ~ 17495968 (+)
G117750 NA non-coding upstream 5097 17164185 ~ 17164471 (+)
G117711 NA non-coding upstream 97342 17068585 ~ 17072226 (+)
G117708 NA non-coding upstream 104191 17065173 ~ 17065377 (+)
G117701 NA non-coding upstream 126658 17041521 ~ 17042910 (+)
G117809 NA non-coding downstream 1544 17323963 ~ 17324194 (+)
G117811 NA non-coding downstream 4528 17326947 ~ 17327177 (+)
G117813 NA non-coding downstream 10979 17333398 ~ 17334025 (+)
G117816 NA non-coding downstream 13438 17335857 ~ 17336202 (+)
G117817 NA non-coding downstream 17157 17339576 ~ 17340310 (+)
G117714 LOC106605886 other upstream 95867 17073201 ~ 17073701 (+)
G117704 NA other upstream 118729 17050132 ~ 17050839 (+)
G117048 NA other upstream 983784 16182890 ~ 16185784 (+)
LOC110535842 LOC106605985 other upstream 1717880 15448845 ~ 15451856 (+)
G117735 NA other downstream 133346 17455765 ~ 17458022 (+)
LOC110536658 LOC106577300 other downstream 1134939 18457284 ~ 18481741 (+)
G119153 LOC106605761 other downstream 1311420 18633839 ~ 18636041 (+)
G119160 NA other downstream 1348094 18670513 ~ 18672320 (+)

Expression


Co-expression Network