LOC110520897


Basic Information

Item Value
gene id LOC110520897
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17311128 ~ 17315827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035393.1
gtggatgaatagtattgggcaGTGGAGGCTGACTCTACGtaaggacaggtctgtgtggatgaatagtattgggctgtggaggctgactctccctaaggacaggtctgtgtggatgaatagtattgggctgtGGAGGCTGACTCTCCCTAATGACATgtctgtgtggatgaatagtattgggctgtggaggctgactctccctaaggacaggtctgtgtgtgtggatgaatagtattgggctgtGGAGGCTGACTCTCCCTAAGGACAAgtctgtgtggatgaatagtattggacagtggagactgactctccctaaggacaggtctgtgtgtgtggatgaatagtattgggctgtGGAGGCTGACTCTCCCTAAGGATAggtctgtgtggatgaatagtattgggctgaggaggctgactctccctaaggacagGTCTCtgtggatgaatagtattgggctgtGGAGGCTGACTCTCCCTAAGGACAGgtctgtgtggatgaatagtattgggctgtggaggctgactctccctaaggacaggtctgtgtggatgaatagtattgggctgaGGAGGCTGACTCTACGTAAGGACAGGTCTCtgtggatgaatagtattggACAGTGGAGGCTGACTCTCCCtaaggacaggtctgtgtggatgaatagtattgggctgtggaggctgactctccctaatgacaggtctgtgtggatgaatagtattgggctgaGGAGGCTGACTCTCCCTAAGGACAGTGTGTGACTGACTGTATGTGAGCAAATGTgtgtggagggacagagagagtagggACTGTTGTACTCTCCAGGGGAAGAGAAAAACAGAGGAGTGAGTTGAAAGAAGacaggaaaaggaagagagatagagactgagaacgagagagaggaagatagagagagatggggccgGTGAAGAGGCCGGGTAGATTTGCTGCCTGACTCGGTTGCCAGGGGCTacctgtgtaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
>XR_005035391.1
gtggatgaatagtattgggcaGTGGAGGCTGACTCTACGtaaggacaggtctgtgtggatgaatagtattgggctgtggaggctgactctccctaaggacaggtctgtgtggatgaatagtattgggctgtGGAGGCTGACTCTCCCTAATGACATgtctgtgtggatgaatagtattgggctgtggaggctgactctccctaaggacaggtctgtgtgtgtggatgaatagtattgggctgtGGAGGCTGACTCTCCCTAAGGACAAgtctgtgtggatgaatagtattggacagtggagactgactctccctaaggacaggtctgtgtgtgtggatgaatagtattgggctgtGGAGGCTGACTCTCCCTAAGGATAggtctgtgtggatgaatagtattgggctgaggaggctgactctccctaaggacaggtctgtgtggatgaatagtattgggctgaggaggctgactctacgtaaggacaggtctgtgtggatgaatagtattgggctgaggaggctgactctacgtaaggacaggtctgtgtggatgaatagtattgggctgaGGAGGCTGAGGAGGCTGACTCTACGTAAGGACAGGTCTCtgtggatgaatagtattgggctgtGGAGGCTGACTCTCCCTAAGGACAGgtctgtgtggatgaatagtattgggctgtggaggctgactctccctaaggacaggtctgtgtggatgaatagtattgggctgaGGAGGCTGACTCTACGTAAGGACAGGTCTCtgtggatgaatagtattggACAGTGGAGGCTGACTCTCCCtaaggacaggtctgtgtggatgaatagtattgggctgtggaggctgactctccctaatgacaggtctgtgtggatgaatagtattgggctgaGGAGGCTGACTCTCCCTAAGGACAGTGTGTGACTGACTGTATGTGAGCAAATGTgtgtggagggacagagagagtagggACTGTTGTACTCTCCAGGGGAAGAGAAAAACAGAGGAGTGAGTTGAAAGAAGacaggaaaaggaagagagatagagactgagaacgagagagaggaagatagagagagatggggccgGTGAAGAGGCCGGGTAGATTTGCTGCCTGACTCGGTTGCCAGGGGCTacctgtgtaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
>XR_005035389.1
gtggatgaatagtattgggcaGTGGAGGCTGACTCTACGtaaggacaggtctgtgtggatgaatagtattgggctgtggaggctgactctccctaaggacaggtctgtgtggatgaatagtattgggctgtGGAGGCTGACTCTCCCTAATGACATgtctgtgtggatgaatagtattgggctgtggaggctgactctccctaaggacaggtctgtgtgtgtggatgaatagtattgggctgtGGAGGCTGACTCTCCCTAAGGACAAgtctgtgtggatgaatagtattggacagtggagactgactctccctaaggacaggtctgtgtgtgtggatgaatagtattgggctgtGGAGGCTGACTCTCCCTAAGGATAggtctgtgtggatgaatagtattgggctgaggaggctgactctccctaaggacaggtctgtgtgtgtggatgaatagtattgggctgtggaggctgactctccctaaggacaggtctgtgtggatgaatagtattgggctgaggaggctgactctacgtaaggacaggtctgtgtggatgaatagtattgggctgaggaggctgactctacgtaaggacaggtctgtgtggatgaatagtattgggctgaGGAGGCTGAGGAGGCTGACTCTACGTAAGGACAGGTCTCtgtggatgaatagtattgggctgtGGAGGCTGACTCTCCCTAAGGACAGgtctgtgtggatgaatagtattgggctgtggaggctgactctccctaaggacaggtctgtgtggatgaatagtattgggctgaGGAGGCTGACTCTACGTAAGGACAGGTCTCtgtggatgaatagtattggACAGTGGAGGCTGACTCTCCCtaaggacaggtctgtgtggatgaatagtattgggctgtggaggctgactctccctaatgacaggtctgtgtggatgaatagtattgggctgaGGAGGCTGACTCTCCCTAAGGACAGTGTGTGACTGACTGTATGTGAGCAAATGTgtgtggagggacagagagagtagggACTGTTGTACTCTCCAGGGGAAGAGAAAAACAGAGGAGTGAGTTGAAAGAAGacaggaaaaggaagagagatagagactgagaacgagagagaggaagatagagagagatggggccgGTGAAGAGGCCGGGTAGATTTGCTGCCTGACTCGGTTGCCAGGGGCTacctgtgtaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>XR_005035390.1
gtggatgaatagtattgggcaGTGGAGGCTGACTCTACGtaaggacaggtctgtgtggatgaatagtattgggctgtggaggctgactctccctaaggacaggtctgtgtggatgaatagtattgggctgtGGAGGCTGACTCTCCCTAATGACATgtctgtgtggatgaatagtattgggctgtggaggctgactctccctaaggacaggtctgtgtgtgtggatgaatagtattgggctgtGGAGGCTGACTCTCCCTAAGGACAAgtctgtgtggatgaatagtattggacagtggagactgactctccctaaggacaggtctgtgtgtgtggatgaatagtattgggctgtGGAGGCTGACTCTCCCTAAGGATAggtctgtgtggatgaatagtattgggctgaggaggctgactctccctaaggacaggtctgtgtgtgtggatgaatagtattgggctgtggaggctgactctccctaaggacaggtctgtgtggatgaatagtattggACAGTGGAGGCTGACTCTCCCTAaggacaggtctgtgtggatgaatagtattgggctgaggaggctgactctacgtaaggacaggtctgtgtggatgaatagtattgggctgaggaggctgactctacgtaaggacaggtctgtgtggatgaatagtattgggctgaGGAGGCTGAGGAGGCTGACTCTACGTAAGGACAGGTCTCtgtggatgaatagtattgggctgtGGAGGCTGACTCTCCCTAAGGACAGgtctgtgtggatgaatagtattgggctgtggaggctgactctccctaaggacaggtctgtgtggatgaatagtattgggctgaGGAGGCTGACTCTACGTAAGGACAGGTCTCtgtggatgaatagtattggACAGTGGAGGCTGACTCTCCCtaaggacaggtctgtgtggatgaatagtattgggctgtggaggctgactctccctaatgacaggtctgtgtggatgaatagtattgggctgaGGAGGCTGACTCTCCCTAAGGACAGTGTGTGACTGACTGTATGTGAGCAAATGTgtgtggagggacagagagagtagggACTGTTGTACTCTCCAGGGGAAGAGAAAAACAGAGGAGTGAGTTGAAAGAAGacaggaaaaggaagagagatagagactgagaacgagagagaggaagatagagagagatggggccgGTGAAGAGGCCGGGTAGATTTGCTGCCTGACTCGGTTGCCAGGGGCTacctgtgtaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>XR_005035392.1
gtggatgaatagtattgggcaGTGGAGGCTGACTCTACGtaaggacaggtctgtgtggatgaatagtattgggctgtggaggctgactctccctaaggacaggtctgtgtggatgaatagtattgggctgtGGAGGCTGACTCTCCCTAATGACATgtctgtgtggatgaatagtattgggctgtggaggctgactctccctaaggacaggtctgtgtgtgtggatgaatagtattgggctgtGGAGGCTGACTCTCCCTAAGGACAAgtctgtgtggatgaatagtattggacagtggagactgactctccctaaggacaggtctgtgtgtgtggatgaatagtattgggctgtGGAGGCTGACTCTCCCTAAGGATAggtctgtgtggatgaatagtattgggctgaggaggctgactctccctaaggacaggtctgtgtgtgtggatgaatagtattgggctgtggaggctgactctccctaaggacaggtctgtgtggatgaatagtattgggctgaggaggctgactctacgtaaggacaggtctgtgtggatgaatagtattgggctgaggaggctgactctacgtaaggacaggtctgtgtggatgaatagtattgggctgaGGAGGCTGAGGAGGCTGACTCTACGTAAGGACAGGTCTCtgtggatgaatagtattgggctgtGGAGGCTGACTCTCCCTAAGGACAGGTAtgtgtggatgaatagtattgggctgaGAAGGCTGACTCTACGTAAGGACAGGTCTCtgtggatgaatagtattgggctgtggaggctgactctccctaaggacaggtctgtgtggatgaatagtattgggctgaGGAGGCTGACTCTACGTAAGGACAGgtctgtgtggatgaatagtattgggctgaGGAGGCTGACTCTCCCTAAGGACAGTGTGTGACTGACTGTATGTGAGCAAATGTgtgtggagggacagagagagtagggACTGTTGTACTCTCCAGGGGAAGAGAAAAACAGAGGAGTGAGTTGAAAGAAGacaggaaaaggaagagagatagagactgagaacgagagagaggaagatagagagagatggggccgGTGAAGAGGCCGGGTAGATTTGCTGCCTGACTCGGTTGCCAGGGGCTacctgtgtaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtta

Function

NR:

description
PREDICTED: agglutinin-like protein 5 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035393.1 False 1017 mRNA 0.51 3 17311128 17315812
XR_005035391.1 False 1190 mRNA 0.51 3 17311128 17315814
XR_005035389.1 False 1249 mRNA 0.51 3 17311128 17315815
XR_005035390.1 False 1303 mRNA 0.51 3 17311128 17315815
XR_005035392.1 True 1207 mRNA 0.50 3 17311128 17315827

Neighbor

gene id symbol gene type direction distance location
LOC110534250 adar coding upstream 149730 17141664 ~ 17161398 (+)
LOC110536287 LOC106605892 coding upstream 255939 17026878 ~ 17055189 (+)
LOC110534239 LOC106594151 coding upstream 306533 17002350 ~ 17004595 (+)
LOC110536241 LOC106606012 coding upstream 309765 16998821 ~ 17001363 (+)
LOC110536275 s10i coding upstream 312772 16995630 ~ 16998361 (+)
LOC110520882 rab13 coding downstream 67236 17383063 ~ 17394790 (+)
LOC110520798 fam189b coding downstream 79516 17395343 ~ 17421816 (+)
fdps LOC106605924 coding downstream 106229 17422056 ~ 17425996 (+)
rusc1 LOC106605889 coding downstream 110605 17426432 ~ 17452486 (+)
dap3 LOC106605893 coding downstream 168998 17484825 ~ 17495968 (+)
G117793 NA non-coding upstream 11649 17298264 ~ 17299479 (+)
G117787 NA non-coding upstream 21326 17281522 ~ 17289802 (+)
G117780 NA non-coding upstream 24376 17264622 ~ 17286752 (+)
G117781 NA non-coding upstream 43504 17267265 ~ 17267624 (+)
G117772 LOC100380853 non-coding upstream 56214 17243409 ~ 17254914 (+)
G117807 NA non-coding downstream 2802 17318629 ~ 17319699 (+)
G117809 NA non-coding downstream 8136 17323963 ~ 17324194 (+)
G117811 NA non-coding downstream 11120 17326947 ~ 17327177 (+)
G117813 NA non-coding downstream 17571 17333398 ~ 17334025 (+)
G117816 NA non-coding downstream 20030 17335857 ~ 17336202 (+)
G117714 LOC106605886 other upstream 237427 17073201 ~ 17073701 (+)
G117704 NA other upstream 260289 17050132 ~ 17050839 (+)
G117048 NA other upstream 1125344 16182890 ~ 16185784 (+)
LOC110535842 LOC106605985 other upstream 1859440 15448845 ~ 15451856 (+)
G117735 NA other downstream 139938 17455765 ~ 17458022 (+)
LOC110536658 LOC106577300 other downstream 1141531 18457284 ~ 18481741 (+)
G119153 LOC106605761 other downstream 1318012 18633839 ~ 18636041 (+)
G119160 NA other downstream 1354686 18670513 ~ 18672320 (+)

Expression


Co-expression Network