LOC110520882 (rab13)


Basic Information

Item Value
gene id LOC110520882
gene name rab13
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17383063 ~ 17394790 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939700.1
TCCTGCTGTCCCATTTCAGTCTGTTCCCTCCACTGTAATAactgaacccctccctctctacgtAATCCTACGTGAACTTCGGCAGGAGAAAGTTTTTGGGCGAAAACGTAGCCCTGTCTGTGTGGAGTGGATGTATGGTAATCGGCCTTTGGAAGAAAATAACTTGACATTTTGGCTTGATAaatggattttaacaaagctttGTGGCGCTGTAGAATTGTATAGCCCATTGAAGTGCAGAAGCGTTTGTTCCAACTTTCGTTTTTAACTTGTGGCGTTCTGTTTTATTTTTCTCCGACCAAAAGAGACATTGGGGGAGAACCGTATTTACCGGTGACAGTTTTCAAGGGAAAGGGAAAACAAGCGGATTttatgctgaagaaaagcagaaaCTCCCCAGGAGAAATGAGAGTGTAATTTTGACCTTCGTGTATGTTGAGCAATACTTTTTAAGGCATTTCTTAACCTCTTAAACGTTACAAATAAGTGTAAGAAGAACATTGGAAAGTGTACTGGTTTTGTTAAAGGTCGTAGTTTCTGATAATTCACCCAAAACTTTGAAAGACATTATGGCGAAGAAGTACGACTTCCTTTTCAAATTATTACTCATCGGAGATAGTGGAGTGGGGAAAACATGTCTGATTATTCGATTTGCTGAGGACAACTTCAACTCAACCTACATATCAACTATCGGCATCGACTTTAAAGTAAAGACGATAGACGTGGAGGGAAAGAAAGTCAAACTGCAAGTCTGGGACACAGCAGGGCAGGAGAGGTTTAAGACCAtcactacagcctactacagaggAGCTATGGGCATCATCCTGGTGTATGACATCACAGACGAGAAGTCCTACGAGAACATTCAGAACTGGATGAAGAGCATCAAGGAGAATGCATCAGCGGGGGTCAGCCGGATGTTGCTAGCTAACAAGTGTGACATTGAGGCCAAGAGGAAGGTATCCAAGGAAACGGGGGAAAAGCTGGCAAAGGATCATGGGATCAGATTCTTTGAGACCAGTGCAAAGGCCAGCATTAATGTTGATGAGTCTTTTATGGCTTTGGCTCGAGATATTCTACTGAAGTCCAGCAAGAAGCCGGGCCCCACAGGTCGCGAGGTCAAAATCACCAACGCTGAGAAGAAATCCTCCAAATGTCTCCTACTGTAGAGGCAGAGCTGGCCTGTCCTGCCTGACTCTTCGTTGCCTGAGGGAACTATCACATATAGGAACAATATTATTGCAAAGGAAATGGTTTCAAAGGCGCAATCCACAAGTTCTCTGTCCCCTGTGGCAACAAAATCCATTTCAAACACTATTGacttgaaaaaaatatttatgtTTTCATTTACTTCCCCCTCCCCTTTAAAAAGTGCTAACTACACTTTTTTTGACCAGAAAGCGAACTTCTGGATTGCACTTTTAATGACCATGAAACTATGTTGAGGTGGTCCAAGGGCATTTTACAGAGGAATATCCAGTGGTTTGTTTAAACAATAGGATGAACACCACCTTGATTTCAACCAAAACATGTTTTCTATCAACTGTCTTCAATCTCCTGCAATGGCTTTGTTGTCTtggtgactgactgattgacatgGTATGTTTACACTCCACCAGAGCCATACAGAGTTAAGGAAAATATCTTCCATGTTGGCTCCACATGTTCCATGAGGCAACATTCCAAAATGAATTCCTTCTACAATGATCTGTTGAACTAGATTTTTTGGAACCAACATGGTGGTCGATCAAATTCTAAATCCCAAACTGAGTTTGCTGAACTCTGTAAACCCATGGCTCTGGACTTCACACTGTAGAGTAGTGGTACACAGCTCCTTAATGGAACAAGAGTCTGCTGTGTTTCATTCTATCTCTCTATGTCAATTATTTTTCCTTGATTAACCAGGAACATTAACAAGTGACCTTTCAGTCAAACTGCCAATCACATTCTTGCTTTTTGATTGAACAGTTGATGTAACAGTAGATTGTCTCGAGAGTGTAATCACTGGGCTCCTCGGATCGAAATGAGTTCCTGATGGAGAGACAAGGTCAAAAAGCAGCAGGTATTACTGTAACATTAAAGGTAACTACTACCATAATGAGGACCCTAGAGGACCTGAGTTGTGCACCGCTGCCATAGAATCACTTTTCAGTGTCATAGCCAAAGAATTTAAATTaggacaacacacagacattcctttccatttgttttatttctatgttcaTAGCAGCTCATAGCTGTTTAGGAGGAGCATTCAAGAGAGTGACGGGAGTTTAGATCTATATGTTCTAACTATGGTGATGGTATATTAtgctcttaaagggatagttcaccctgAATTGTAATTTTGGCTGTGTTTTCCACACTACGTAAAGATGAGTGATCTGGGTTGTGCCTGTTGTAAACTATTCTTCTACTACATAAAGTGTGGTACATGGTTGGACTGAGGATGTggaagagggagacagggaagtgcaagaggagaggagtgatgaGAGAATGAGATGGATAGATGAAGCAAGGGAACAAAAACACGAGTAAAGCAAGTGTCATAGAGACAGGGATGGAATGATGCTGATGAGAGTTGGACATAGAGGGATGAGATGTTCTCTTTTTTGCTGATAGACATACTGACCATTTCTGATCTGATAGACAAACGGACCTTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACAAACTGACCCTTTCTGATCTGATAGACAAACTGACCCTTTCTGATCTGATAGACAAACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACAAACTGACCCTTTCTGATCTGATAGACACACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACAAACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACAAACTGACCCTTTCTGATCTGATAGACACACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACAAACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACAAACTGACCCTTTCTGATCTGATAGACAAACTGACCCTTTCTGATCTGATAGACATACTGACCCTTTCTGATCTGATAGACAAACTGACCTTTTATCTCATGCACCTGTTCAACAGCTTTGGAAAAAAAGAAACACCCTTCCTTCCTCTTTCAGACAGACCAGGGCCCTGGTCCAATGCACCCCTGGAGGTAATCACTGATGTACTACTGGATAGATTTGCAAATATATCTCTCCATATATCATTTACTGTACTGTGATTGGACAAGACTTCCACCTCGATACTTTCACCAATCCAAACGTGTCAGATCAGTGATAACTCTGAAGGAAGGAATGATGTCTCTTCCCATGCCAGACACTACATAATCATTACTGTGCCAGCAAGCTTCTCTGTCTATGGGTTCATTTCAATACTCTAAAGTGGCTTCTGGGAAGAAGTTGAGGGGAAGAAGCTACTCCAGACTATTGAGATGATGCACCCTGTGTGTTTTTACTCTGATATCTCACTGTCCCCTCCCTCACCTTTCCTCTTTTCCTTCACACACATGTTCATCCTATCCACTATTCCTTGTCTGATCAATTATCTTATGACCAATGTATACTATTCTACATAGGCGCTGCTTAGCCTATTCAATAAAAGACTGTCAAAAAGAA

Function

symbol description
rab13 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within angiogenesis. Predicted to be located in several cellular components, including cytoplasmic vesicle; lateral plasma membrane; and trans-Golgi network. Predicted to be active in cytoplasmic vesicle and plasma membrane. Is expressed in notochord; pectoral fin musculature; vein; and ventral mesoderm. Orthologous to human RAB13 (RAB13, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-13

GO:

id name namespace
GO:0035767 endothelial cell chemotaxis biological_process
GO:0032869 cellular response to insulin stimulus biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0070830 bicellular tight junction assembly biological_process
GO:0001525 angiogenesis biological_process
GO:0044795 trans-Golgi network to recycling endosome transport biological_process
GO:0010737 protein kinase A signaling biological_process
GO:0015031 protein transport biological_process
GO:0032456 endocytic recycling biological_process
GO:1902463 protein localization to cell leading edge biological_process
GO:0030866 cortical actin cytoskeleton organization biological_process
GO:0031175 neuron projection development biological_process
GO:0032593 insulin-responsive compartment cellular_component
GO:0030139 endocytic vesicle cellular_component
GO:0043005 neuron projection cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0055038 recycling endosome membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030027 lamellipodium cellular_component
GO:0016328 lateral plasma membrane cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K06109 RAB13; Ras-related protein Rab-13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939700.1 True 4197 mRNA 0.42 7 17383063 17394790

Neighbor

gene id symbol gene type direction distance location
LOC100135972 LOC100135972 coding upstream 60644 17169568 ~ 17322419 (+)
LOC110520897 NA coding upstream 67236 17311128 ~ 17315827 (+)
LOC110534250 adar coding upstream 221665 17141664 ~ 17161398 (+)
LOC110536287 LOC106605892 coding upstream 327874 17026878 ~ 17055189 (+)
LOC110534239 LOC106594151 coding upstream 378468 17002350 ~ 17004595 (+)
LOC110520798 fam189b coding downstream 553 17395343 ~ 17421816 (+)
fdps LOC106605924 coding downstream 27266 17422056 ~ 17425996 (+)
rusc1 LOC106605889 coding downstream 31642 17426432 ~ 17452486 (+)
dap3 LOC106605893 coding downstream 90035 17484825 ~ 17495968 (+)
gba gba coding downstream 111785 17506575 ~ 17515027 (+)
G117728 NA non-coding upstream 492 17378012 ~ 17382571 (+)
G117818 NA non-coding upstream 27697 17354107 ~ 17355366 (+)
G117817 NA non-coding upstream 42753 17339576 ~ 17340310 (+)
G117816 NA non-coding upstream 46861 17335857 ~ 17336202 (+)
G117813 NA non-coding upstream 49038 17333398 ~ 17334025 (+)
G117839 NA non-coding downstream 11413 17406203 ~ 17407798 (+)
G117842 NA non-coding downstream 48101 17442891 ~ 17443612 (+)
G117864 NA non-coding downstream 105148 17499938 ~ 17500230 (+)
G117865 NA non-coding downstream 105856 17500646 ~ 17501204 (+)
G117714 LOC106605886 other upstream 309362 17073201 ~ 17073701 (+)
G117704 NA other upstream 332224 17050132 ~ 17050839 (+)
LOC110536275 s10i other upstream 384702 16995630 ~ 16998361 (+)
G117048 NA other upstream 1197279 16182890 ~ 16185784 (+)
LOC110535842 LOC106605985 other upstream 1931375 15448845 ~ 15451856 (+)
G117735 NA other downstream 60975 17455765 ~ 17458022 (+)
LOC110536658 LOC106577300 other downstream 1062568 18457284 ~ 18481741 (+)
G119153 LOC106605761 other downstream 1239049 18633839 ~ 18636041 (+)
G119160 NA other downstream 1275723 18670513 ~ 18672320 (+)

Expression


Co-expression Network