fdps (LOC106605924)


Basic Information

Item Value
gene id fdps
gene name LOC106605924
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17422056 ~ 17425996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598292.2
GATCACTCGCGAAGGCTGTCGGGAGGTTTAGTTCAGAAGCTATGCGATAAAATAAACGCCAACGTGGTCAAAAACTACAATACACCGAATTCCCAAGTTCTGTGTGCGTCGTACTCTCCCATTTGACAGGTAAAGAGACACCAGTGAAGAGAGAATTGACAAACAGACTGTCACTACGAGCAAGGACAAGATAATAATGGGTGACAGTAGTTGCAGCAACGGGACCCACCACTCTGGAGCGGTGCAGTCAGACCCACAGCTGTTTGAGGCCCAGTTTGAGGAGCTGGTGACCGAGCTCACAGAGCAGGACCTCACAGACTCTGTCCTCGCTGACGCTCTCAACAGACTCCGAGAGgTGTTGCATTACAACACTCCTGGAGGAAAAAGAAACAGAGGTCTGTCTGTGATTGGCTCTTTGAGGGAGCTTGTTCCTCCCACTGAGCTGACCCAGGATGCTGTGCGACGGGCCCTGCTGGTTGGCTGGTGCATTGAgctgctccaggCGTTCTTCTTGGTAGCTGATGACATCATGGATGCTTCAGAGACTCGGAGAGGTCAGCCCTGCTGGTACAAGAGGGAGAGAGTGGGTCTGGATGCCATCAATGATTCCTTCCTCCTGGAGGGATCCATCTACAGACTACTGCGCAGACACTGCAGGGCACAGCCCTACTACGTACACCTATTGGAGCTCTTCACTgagACGTCCTTCCAGACCGAGCTGGGCCAGGCACTGGACCTGATGACCGCTCCTCCTGGTCAAATAGACCTCAACCGCTTCACCATGGAGAGATATAAGGCCATAGTAAAGTACAAGACTGCCTTCTACTCCTTCTACCTCCCTGTGGCAGCAGCCATGTACATGGCGGGCATCGACAGTGAAGAGGAACACAACAACGCCAAACATATCTTACTTGAGATGGGAGAGTTCTTCCAGATACAGGATGACTACCTGGATTGCTATGGCGACCCGGCGGTGACAGGGAAGATTGGAACAGACATCCAGGACAACAAATGCGGCTGGCTGGTGGTGACCGCTCTAGGGGTCATGACCCCGGAACAAAGGGCAGAGCTGGAGTCATGTTATGGTCGGCATGACAGTGTGGAGAAGGTGAAAGCACTGTACAACACCCTACAGATGCCCACCCTGTACCACCAATACGAAGACGACAGCTATCAGCGCTTACAGAAACTCATCGCGCGTCACGCCCAAAACCTTCCACACGCAGTTTTCCTCAACTTTGCCAAGAAAATCTACAAGAGAAACAAGTGAACACTATGATGAGACTGTTTTTATTTAGTGTGTGTTGCACTGTAGCTGGACTGAGGAGGGCTAGTTGGTGTGGCTGCTTCCATTTCGGTCCCTTGCTCCTACCCCTTCAGTGAACACCATGGGGTTAAGGGCtagggcagggctctccaaccctggtcctggagagctaccatcctgtaggttttcgctccaaccctaatctaacGCACCTGATTGTAATAAGAGTGgcaacctacaggagggtagctctccaggaacagggttggggagcCCTGGGTTAGGTTATGGGTCTAGGGACCTACAATAGAACAGGGCTTTAGTTTGGACTGCGAGTGAACCTGGTTGAGATTAGACCAGTCTTAAACCTGGTCTTCAAGGACCCCTGTGTGTGCCCATTTTTGTTCTCCATAATATTATTTttaattatgtacaaaataactgATTACTCAAACTGGTAATACCATGTCATCAAAAagtatgtctgtctctgtatcaATCTCTTTATTTATTGATGATGACGTGAGTATGACATGTCACTGTTAGCAGCTGTCTGCGCTAGAATCCTGTGgatttgatgatgatgatgatgatgatgatgatggcaggGAGTGACATTGGTTGATGATCACATCAATCAGGATGACAACCTGGGGCCCTGTttggcatagggctctggtctctaccggcatagggctctggtctctACCGGCAGGGGGCTCTGGTCTCTACCGGCAGGGGGCTCTGGTCTCTACCGGCAGAGTGAATGGACTAGAGCAGGAAGCGAAAGGAACAATCctgctgtctctcactgtctttgTATTATgttttctctatctccctctgtgtATAATCATCTCTTTCTaattactactgtacctgctgctATTGCTTTTAATAAAGAAATGTGACCAACATGGGTTTAA

Function

NR:

description
farnesyl pyrophosphate synthase-like

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K00787 FDPS; farnesyl diphosphate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598292.2 True 2193 mRNA 0.50 10 17422056 17425996

Neighbor

gene id symbol gene type direction distance location
LOC110520798 fam189b coding upstream 8167 17395343 ~ 17421816 (+)
LOC110520882 rab13 coding upstream 27266 17383063 ~ 17394790 (+)
LOC100135972 LOC100135972 coding upstream 99637 17169568 ~ 17322419 (+)
LOC110520897 NA coding upstream 106229 17311128 ~ 17315827 (+)
LOC110534250 adar coding upstream 260658 17141664 ~ 17161398 (+)
rusc1 LOC106605889 coding downstream 436 17426432 ~ 17452486 (+)
dap3 LOC106605893 coding downstream 58829 17484825 ~ 17495968 (+)
gba gba coding downstream 80579 17506575 ~ 17515027 (+)
polr3c LOC106605790 coding downstream 97088 17523084 ~ 17532237 (+)
LOC110536418 LOC106575022 coding downstream 590799 18016795 ~ 18047915 (+)
G117839 NA non-coding upstream 14258 17406203 ~ 17407798 (+)
G117728 NA non-coding upstream 39485 17378012 ~ 17382571 (+)
G117818 NA non-coding upstream 66690 17354107 ~ 17355366 (+)
G117817 NA non-coding upstream 81746 17339576 ~ 17340310 (+)
G117842 NA non-coding downstream 16895 17442891 ~ 17443612 (+)
G117864 NA non-coding downstream 73942 17499938 ~ 17500230 (+)
G117865 NA non-coding downstream 74650 17500646 ~ 17501204 (+)
G117883 NA non-coding downstream 110524 17536520 ~ 17543637 (+)
G117943 NA non-coding downstream 234788 17660784 ~ 17661055 (+)
G117714 LOC106605886 other upstream 348355 17073201 ~ 17073701 (+)
G117704 NA other upstream 371217 17050132 ~ 17050839 (+)
LOC110536275 s10i other upstream 423695 16995630 ~ 16998361 (+)
G117048 NA other upstream 1236272 16182890 ~ 16185784 (+)
G117735 NA other downstream 29769 17455765 ~ 17458022 (+)
LOC110536658 LOC106577300 other downstream 1031362 18457284 ~ 18481741 (+)
G119153 LOC106605761 other downstream 1207843 18633839 ~ 18636041 (+)
G119160 NA other downstream 1244517 18670513 ~ 18672320 (+)
G119245 stl2 other downstream 1533140 18934673 ~ 18992769 (+)

Expression


Co-expression Network