dap3 (LOC106605893)


Basic Information

Item Value
gene id dap3
gene name LOC106605893
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17484825 ~ 17495968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939755.1
CATCCTTCGTCTACAAACCAAAATGGCGACTACCACGGATTTAGCACCGTGACAGTTCGACCGAAATTGTGCAACTCTTCAGTGTTCTCAAAATAGACCTGAACCGTCTAAAAGTACATGACCTTGCCTGTTTGGGTCTTAATTTtgaatttaattaattaattgACCATGGCCCTTCACAGACTATCCTTGAGATTACGACAAACGGTAGCGCAGGTGCGGCCGCTCCATGGCAGTGGGTGTGGCCAGCAGCAGGAGGCGATTGGCATGGAGACGAGACCGGAGACATTCTCCATCTTCAGAACACAGGAGAACGACCCAgCCTGTCAGTCAGAACAGCACCTAGGGCAGTACTACACTGTGCCCCCCTCCCACTTCCACACTGTCTTCCCCCATGGCCTGCCTCCACGATACCAAcaacagGTGAAGACGTTTAACGAGGGCTGTGTGATGGTGAGGCAGCCTGCTCTGGAGCTGATATCTCACCTGAAGAGAGCTGACTACAGCAAGCCCACCCTGCGCTACCTACTCTATGGGGTGAAGGGCAGTGGGAAGACCATGTCTCTCTGTCATACTGTCCACTACTGCTCCACACAGGGATGGCTAGTACTACACATACCAGATgCCCACCTGTGGGTGAAGAACTGTAAGGAGCTGTTGCCCTCCTCCTACCACGCCTCCCGCTTTGACCAGCCAATACAGGCCTCCAACTGGCTACGCAACTTCAGAACCACCAATGAACACTTCCTTTCTAAGATCAAGTTGAGGCAGCGGTACGTGTGGACTAAGCGAGAGAGCACTGAGGAGGGACGGCCACTAGGGGAGCTGGTGGACATGGGAGTGTCTCGTGTGAAGAGCAGCAGTGATGTGGTGGGGGCAGTTCTAAAGGAGCTGAGGCTACAGGCTGGGGGGACAGAGGGGGGCTTCAGGCTGGCTGTGGCTGTTGATGGAGTCAACGGTCTCTGGGGAAGGACCACGCTCAAGAAGGAGGACAAGAGCCCTgTGGCTCCAGAGGAGTTGACGTTGGTTCATAACTTGAGGAAGATGATCAACAATGACTGGtgtggAGGGGCGGTCATCGCCACTCTGTCTCAGACAGGATCTCTCTACGCTCCAAGCTCTGCCTACCTGCCCCAGGAGCTGCTGGGAGAGGAGGGCTTTGACAGCATGGACCCGTTTGTCCCAGTACCAGTCTCCCTCTACAGTGAGAAGGAGTTTGAGAGCTGTTACCTCTACTACCTGGACCGCCACTGGCTACAACACCCACACAgtcagacagaggaagggaagaaaGAACTGATCTTCCTCAGCAACAGAAACCCTTCTGTACTGGAGAGACTGTGTGCCTTCCTGTAACATCACACATGGGCCCACACcctcccactcacacacacccataaTCATGGACAAACCatatagatagaggactcatctttatatCTGTGCCTTTACagcatctgtgacagcatgggcagtgccattgaggctacaacccataggaatccccactcAGTTGACTACTATAAGATGGTGGAAGCCTTCGATGGTGCTGCCCACACAACATCAAGGCCACTAgcggcctctatcattctctatgggacAACCGCCAATACAGACTCATACATAACTACAATGTTATATtccatgtatatgtgtgtgtccccCCATAAATTATTCTGTTGTGATGCATGATAGTGTGTCTTTTTCATAATAAAAATGTACATGAAAAACA
>XM_036939761.1
CATCCTTCGTCTACAAACCAAAATGGCGACTACCACGGATTTAGCACCGTGACAGTTCGACCGAAATTGTGCAACTCTTCAGTGTTCTCAAAATAGACCTGAACCGTCTAAAAGTACATGACCTTGCCTGTTTGGGTCTTAATTTtgaatttaattaattaattggtTGGTAAATTATTGTTGTGTACCTACAGTTGTTGTAGTCTTGCTGCAGTGTAACGTTACTGTAAAACAAGGATGCATGGTGCAGTGTCTTGCTAGcagatatctagctagctaatgcaAGACCATGGCCCTTCACAGACTATCCTTGAGATTACGACAAACGGTAGCGCAGGTGCGGCCGCTCCATGGCAGTGGGTGTGGCCAGCAGCAGGAGGCGATTGGCATGGAGACGAGACCGGAGACATTCTCCATCTTCAGAACACAGGAGAACGACCCAgCCTGTCAGTCAGAACAGCACCTAGGGCAGTACTACACTGTGCCCCCCTCCCACTTCCACACTGTCTTCCCCCATGGCCTGCCTCCACGATACCAAcaacagGTGAAGACGTTTAACGAGGGCTGTGTGATGGTGAGGCAGCCTGCTCTGGAGCTGATATCTCACCTGAAGAGAGCTGACTACAGCAAGCCCACCCTGCGCTACCTACTCTATGGGGTGAAGGGCAGTGGGAAGACCATGTCTCTCTGTCATACTGTCCACTACTGCTCCACACAGGGATGGCTAGTACTACACATACCAGATgCCCACCTGTGGGTGAAGAACTGTAAGGAGCTGTTGCCCTCCTCCTACCACGCCTCCCGCTTTGACCAGCCAATACAGGCCTCCAACTGGCTACGCAACTTCAGAACCACCAATGAACACTTCCTTTCTAAGATCAAGTTGAGGCAGCGGTACGTGTGGACTAAGCGAGAGAGCACTGAGGAGGGACGGCCACTAGGGGAGCTGGTGGACATGGGAGTGTCTCGTGTGAAGAGCAGCAGTGATGTGGTGGGGGCAGTTCTAAAGGAGCTGAGGCTACAGGCTGGGGGGACAGAGGGGGGCTTCAGGCTGGCTGTGGCTGTTGATGGAGTCAACGGTCTCTGGGGAAGGACCACGCTCAAGAAGGAGGACAAGAGCCCTgTGGCTCCAGAGGAGTTGACGTTGGTTCATAACTTGAGGAAGATGATCAACAATGACTGGtgtggAGGGGCGGTCATCGCCACTCTGTCTCAGACAGGATCTCTCTACGCTCCAAGCTCTGCCTACCTGCCCCAGGAGCTGCTGGGAGAGGAGGGCTTTGACAGCATGGACCCGTTTGTCCCAGTACCAGTCTCCCTCTACAGTGAGAAGGAGTTTGAGAGCTGTTACCTCTACTACCTGGACCGCCACTGGCTACAACACCCACACAgtcagacagaggaagggaagaaaGAACTGATCTTCCTCAGCAACAGAAACCCTTCTGTACTGGAGAGACTGTGTGCCTTCCTGTAACATCACACATGGGCCCACACcctcccactcacacacacccataaTCATGGACAAACCatatagatagaggactcatctttatatCTGTGCCTTTACagcatctgtgacagcatgggcagtgccattgaggctacaacccataggaatccccactcAGTTGACTACTATAAGATGGTGGAAGCCTTCGATGGTGCTGCCCACACAACATCAAGGCCACTAgcggcctctatcattctctatgggacAACCGCCAATACAGACTCATACATAACTACAATGTTATATtccatgtatatgtgtgtgtccccCCATAAATTATTCTGTTGTGATGCATGATAGTGTGTCTTTTTCATAATAAAAATGTACATGAAAAACA
>XM_036939764.1
CTACAAACCAAAATGGCGACTACCACGGATTTAGCACCGTGACAGTTCGACCGAAATTGTGCAACTCTTCAGTGTTCTCAAAATAGACCTGAACCGTCTAAAAACCATGGCCCTTCACAGACTATCCTTGAGATTACGACAAACGGTAGCGCAGGTGCGGCCGCTCCATGGCAGTGGGTGTGGCCAGCAGCAGGAGGCGATTGGCATGGAGACGAGACCGGAGACATTCTCCATCTTCAGAACACAGGAGAACGACCCAgCCTGTCAGTCAGAACAGCACCTAGGGCAGTACTACACTGTGCCCCCCTCCCACTTCCACACTGTCTTCCCCCATGGCCTGCCTCCACGATACCAAcaacagGTGAAGACGTTTAACGAGGGCTGTGTGATGGTGAGGCAGCCTGCTCTGGAGCTGATATCTCACCTGAAGAGAGCTGACTACAGCAAGCCCACCCTGCGCTACCTACTCTATGGGGTGAAGGGCAGTGGGAAGACCATGTCTCTCTGTCATACTGTCCACTACTGCTCCACACAGGGATGGCTAGTACTACACATACCAGATgCCCACCTGTGGGTGAAGAACTGTAAGGAGCTGTTGCCCTCCTCCTACCACGCCTCCCGCTTTGACCAGCCAATACAGGCCTCCAACTGGCTACGCAACTTCAGAACCACCAATGAACACTTCCTTTCTAAGATCAAGTTGAGGCAGCGGTACGTGTGGACTAAGCGAGAGAGCACTGAGGAGGGACGGCCACTAGGGGAGCTGGTGGACATGGGAGTGTCTCGTGTGAAGAGCAGCAGTGATGTGGTGGGGGCAGTTCTAAAGGAGCTGAGGCTACAGGCTGGGGGGACAGAGGGGGGCTTCAGGCTGGCTGTGGCTGTTGATGGAGTCAACGGTCTCTGGGGAAGGACCACGCTCAAGAAGGAGGACAAGAGCCCTgTGGCTCCAGAGGAGTTGACGTTGGTTCATAACTTGAGGAAGATGATCAACAATGACTGGtgtggAGGGGCGGTCATCGCCACTCTGTCTCAGACAGGATCTCTCTACGCTCCAAGCTCTGCCTACCTGCCCCAGGAGCTGCTGGGAGAGGAGGGCTTTGACAGCATGGACCCGTTTGTCCCAGTACCAGTCTCCCTCTACAGTGAGAAGGAGTTTGAGAGCTGTTACCTCTACTACCTGGACCGCCACTGGCTACAACACCCACACAgtcagacagaggaagggaagaaaGAACTGATCTTCCTCAGCAACAGAAACCCTTCTGTACTGGAGAGACTGTGTGCCTTCCTGTAACATCACACATGGGCCCACACcctcccactcacacacacccataaTCATGGACAAACCatatagatagaggactcatctttatatCTGTGCCTTTACagcatctgtgacagcatgggcagtgccattgaggctacaacccataggaatccccactcAGTTGACTACTATAAGATGGTGGAAGCCTTCGATGGTGCTGCCCACACAACATCAAGGCCACTAgcggcctctatcattctctatgggacAACCGCCAATACAGACTCATACATAACTACAATGTTATATtccatgtatatgtgtgtgtccccCCATAAATTATTCTGTTGTGATGCATGATAGTGTGTCTTTTTCATAATAAAAATGTACATGAAAAACA
>XM_036939752.1
TTAGCTAGCTATTGAGTTTAGATTACATTGCTAGTCCTAATAACATAGTCATTATTTTACAGTGAAGGTCGCCCCTGCAATAGTACAGATGGCACCAGTGTAACTGTGTAAACTGACCTGGGTTTATGTACTTATTCATGTTCCAGACCATGGCCCTTCACAGACTATCCTTGAGATTACGACAAACGGTAGCGCAGGTGCGGCCGCTCCATGGCAGTGGGTGTGGCCAGCAGCAGGAGGCGATTGGCATGGAGACGAGACCGGAGACATTCTCCATCTTCAGAACACAGGAGAACGACCCAgCCTGTCAGTCAGAACAGCACCTAGGGCAGTACTACACTGTGCCCCCCTCCCACTTCCACACTGTCTTCCCCCATGGCCTGCCTCCACGATACCAAcaacagGTGAAGACGTTTAACGAGGGCTGTGTGATGGTGAGGCAGCCTGCTCTGGAGCTGATATCTCACCTGAAGAGAGCTGACTACAGCAAGCCCACCCTGCGCTACCTACTCTATGGGGTGAAGGGCAGTGGGAAGACCATGTCTCTCTGTCATACTGTCCACTACTGCTCCACACAGGGATGGCTAGTACTACACATACCAGATgCCCACCTGTGGGTGAAGAACTGTAAGGAGCTGTTGCCCTCCTCCTACCACGCCTCCCGCTTTGACCAGCCAATACAGGCCTCCAACTGGCTACGCAACTTCAGAACCACCAATGAACACTTCCTTTCTAAGATCAAGTTGAGGCAGCGGTACGTGTGGACTAAGCGAGAGAGCACTGAGGAGGGACGGCCACTAGGGGAGCTGGTGGACATGGGAGTGTCTCGTGTGAAGAGCAGCAGTGATGTGGTGGGGGCAGTTCTAAAGGAGCTGAGGCTACAGGCTGGGGGGACAGAGGGGGGCTTCAGGCTGGCTGTGGCTGTTGATGGAGTCAACGGTCTCTGGGGAAGGACCACGCTCAAGAAGGAGGACAAGAGCCCTgTGGCTCCAGAGGAGTTGACGTTGGTTCATAACTTGAGGAAGATGATCAACAATGACTGGtgtggAGGGGCGGTCATCGCCACTCTGTCTCAGACAGGATCTCTCTACGCTCCAAGCTCTGCCTACCTGCCCCAGGAGCTGCTGGGAGAGGAGGGCTTTGACAGCATGGACCCGTTTGTCCCAGTACCAGTCTCCCTCTACAGTGAGAAGGAGTTTGAGAGCTGTTACCTCTACTACCTGGACCGCCACTGGCTACAACACCCACACAgtcagacagaggaagggaagaaaGAACTGATCTTCCTCAGCAACAGAAACCCTTCTGTACTGGAGAGACTGTGTGCCTTCCTGTAACATCACACATGGGCCCACACcctcccactcacacacacccataaTCATGGACAAACCatatagatagaggactcatctttatatCTGTGCCTTTACagcatctgtgacagcatgggcagtgccattgaggctacaacccataggaatccccactcAGTTGACTACTATAAGATGGTGGAAGCCTTCGATGGTGCTGCCCACACAACATCAAGGCCACTAgcggcctctatcattctctatgggacAACCGCCAATACAGACTCATACATAACTACAATGTTATATtccatgtatatgtgtgtgtccccCCATAAATTATTCTGTTGTGATGCATGATAGTGTGTCTTTTTCATAATAAAAATGTACATGAAAAACA

Function

NR:

description
28S ribosomal protein S29, mitochondrial-like isoform X1

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005761 mitochondrial ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
K17408 DAP3, MRPS29; small subunit ribosomal protein S29

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939755.1 False 1732 mRNA 0.52 13 17484825 17495968
XM_036939761.1 False 1853 mRNA 0.51 13 17484825 17495968
XM_036939764.1 False 1670 mRNA 0.52 13 17484835 17495968
XM_036939752.1 True 1713 mRNA 0.52 12 17485112 17495968

Neighbor

gene id symbol gene type direction distance location
rusc1 LOC106605889 coding upstream 32339 17426432 ~ 17452486 (+)
fdps LOC106605924 coding upstream 58829 17422056 ~ 17425996 (+)
LOC110520798 fam189b coding upstream 70936 17395343 ~ 17421816 (+)
LOC110520882 rab13 coding upstream 90035 17383063 ~ 17394790 (+)
LOC100135972 LOC100135972 coding upstream 162406 17169568 ~ 17322419 (+)
gba gba coding downstream 10607 17506575 ~ 17515027 (+)
polr3c LOC106605790 coding downstream 27116 17523084 ~ 17532237 (+)
LOC110536418 LOC106575022 coding downstream 520827 18016795 ~ 18047915 (+)
LOC110536431 LOC107573682 coding downstream 556537 18052505 ~ 18071232 (+)
trim108 LOC106573777 coding downstream 581003 18076971 ~ 18086938 (+)
G117842 NA non-coding upstream 41213 17442891 ~ 17443612 (+)
G117839 NA non-coding upstream 77027 17406203 ~ 17407798 (+)
G117728 NA non-coding upstream 102254 17378012 ~ 17382571 (+)
G117818 NA non-coding upstream 129459 17354107 ~ 17355366 (+)
G117864 NA non-coding downstream 3970 17499938 ~ 17500230 (+)
G117865 NA non-coding downstream 4678 17500646 ~ 17501204 (+)
G117883 NA non-coding downstream 40552 17536520 ~ 17543637 (+)
G117943 NA non-coding downstream 164816 17660784 ~ 17661055 (+)
G117926 NA non-coding downstream 187719 17683687 ~ 17686455 (+)
G117735 NA other upstream 26803 17455765 ~ 17458022 (+)
G117714 LOC106605886 other upstream 411124 17073201 ~ 17073701 (+)
G117704 NA other upstream 433986 17050132 ~ 17050839 (+)
LOC110536275 s10i other upstream 486464 16995630 ~ 16998361 (+)
LOC110536658 LOC106577300 other downstream 961390 18457284 ~ 18481741 (+)
G119153 LOC106605761 other downstream 1137871 18633839 ~ 18636041 (+)
G119160 NA other downstream 1174545 18670513 ~ 18672320 (+)
G119245 stl2 other downstream 1463168 18934673 ~ 18992769 (+)
LOC110503718 LOC102193556 other downstream 1760618 19131905 ~ 19259074 (+)

Expression


Co-expression Network