rnf115 (LOC106591015)


Basic Information

Item Value
gene id rnf115
gene name LOC106591015
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17515084 ~ 17523082 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598295.2
GCATGAAGGGATGTTGGCGGACCACCCTCTTTGGTATGCAGGAGGACCGACGTCACTGTTTGTGCTATTCTGGGGAAGATGGCGGAAGCTGCGGCGGTTCCCCCGCATCGGTTCTTCTGTCATTGTTGTAAGGGAGAAGTAAGCCCCAAGCTCCCGGAGTACATCTGTCCCAGATGTGAGTCTGGCTTTATAGAGGAGGTAACAGAAGATTCCAGTCTGCTAGAGGGTGGCACTAACGGGACAGATGACACAGCCACACAGTTTGCAGAGCTGTGGCACCTGTTGTTTGTAGAGAGGCCTTTCACAGTGGATGGTGACAGTCCAGACTCAGAGCCCCGGGTCCCTGGTGGAGGGGTTGGGGTAGGATCAGGGGGGTTAGGTCTGGGGGGGCTGGGAGGGCTAGGAGGCCTGGGAGGAGGTCCTATCGGAGGGTCAGTCCCTGCTGGGCTAGGAGGACCCCTGGGGGGTCCTCTGGGAGGGGGGGAACACTGGGGGCCCGGTCGCCCCCCTCGCCTGCACAGTCAGCGGAGGTACCGCTCCAGAGGGAGCAGCAGACCTGACCGCTCACCTGCCGTAGAGGGgataGTACAACAGTTTCTGGCTGGTCTATTTGCCAACTCTGGAGTTCCTGGCTCACCTCCCCTCTCTTGgACGGGGATGCTACACTCTAACCCAGGGGACTATGCTTGGGGACAGGGGGGACTGGACGCAGTCATCACACAGTTGTTAGGTCAGTTTGAGAACACGGGCCCTCCTCctgcagagaaagagaagatCTCCTCCATACCTACAGTCAACGTGTCTCAGGATCAAGCAGactGCAGTATGGAGTGTCCGGTGTGCAAGGAGGACTTTGCAGTGGGAGAGCCCGTCAGACAGCTACCCTGCAACCACTTCTTCCACTCAGACTGTATAGTACCCTGGCTGGAAATGcaTGATACGTGTCCTGTGTGTAGGAAGGGGTTGAATGGAGAAGACAGCAACACCCAGAACCCCCCAGAATCCCCCTCTCTAAATACGGACCCCCGCACACAGGAGAGATGGTCCTTCTGAAATACAcctccccctcatccctccatccccttatCGCACCTCTCATCTGACCTCCTTTTAATCTCTCATCTGTCCTTCATTCTACTTTTTTGACCCTCATCCCCCCCTTCTCTACAAACTACTGCACACGGGAGATAAGGACTTTCTGAAGGATAGACCTCCTCCATCTCTGCCTCATTCCTCCGTGTCATTCCTTcatctcactcctcctctctgaaTCATCTCTTCATCGATGGTCATCTCAGTTTGGCTGTTCCTGTCTCAATGCCCCTGGAACCATGttcacacagagtacacacacacgtcATGATCTATTAGCTGTCCTCTGCCTCATCATGACCAAGCACTTGCCTTTACCTCGCTTCAAACATCAACCACATCTCGCTTTTTCTACTCTTTTCTCCATATTTCTCTTTTTCCATCCTTCTGAAAAGCACTGCTGTAAAACAATGttgtctctccctacctctctactcCTGggatgcatctcaatagtctagtggcttcctctcctcttcatctgcaCTGAACATGGCAGATGCTCACCGGGAATTTGGTTTTGCCTTTCTAGCTCTGTCACATCAGTGCAGAAAGGAGACATCATTTTGACTATTGAGACGGGCCCCACAACAATCTTTCGCTGTCATTCTGGTGTATATATATTAAACAGATTGCATCGCTCTGTCATTTTACTCCTCTGTTGATGACTTGTCTTTTGTTTCACATTTCTATCACtctatttttttaatgtaaatactTTTAGTCCAACATCTTCTGGTTTGAGAAGAGAACAACAAAGCATATTGAGAATGGAGACAAATGTGAATCCCTGGGTATTAGtctgtatattattatatatatgaTAACATGTATGATGTATTAATAAATCAACAAAAATATTAAAAACCATTAACATTGA
>XM_021598294.2
TGCATGAAGGGATGTTGGCGGACCACCCTCTTTGGTATGCAGGAGGACCGACGTCACTGTTTGTGCTATTCTGGGGAAGATGGCGGAAGCTGCGGCGGTTCCCCCGCATCGGTTCTTCTGTCATTGTTGTAAGGGAGAAGTAAGCCCCAAGCTCCCGGAGTACATCTGTCCCAGATGTGAGTCTGGCTTTATAGAGGAGGTAACAGAAGATTCCAGTCTGCTAGAGGGTGGCACTAACGGGACAGATGACACAGCCACACAGTTTGCAGAGcAGCTGTGGCACCTGTTGTTTGTAGAGAGGCCTTTCACAGTGGATGGTGACAGTCCAGACTCAGAGCCCCGGGTCCCTGGTGGAGGGGTTGGGGTAGGATCAGGGGGGTTAGGTCTGGGGGGGCTGGGAGGGCTAGGAGGCCTGGGAGGAGGTCCTATCGGAGGGTCAGTCCCTGCTGGGCTAGGAGGACCCCTGGGGGGTCCTCTGGGAGGGGGGGAACACTGGGGGCCCGGTCGCCCCCCTCGCCTGCACAGTCAGCGGAGGTACCGCTCCAGAGGGAGCAGCAGACCTGACCGCTCACCTGCCGTAGAGGGgataGTACAACAGTTTCTGGCTGGTCTATTTGCCAACTCTGGAGTTCCTGGCTCACCTCCCCTCTCTTGgACGGGGATGCTACACTCTAACCCAGGGGACTATGCTTGGGGACAGGGGGGACTGGACGCAGTCATCACACAGTTGTTAGGTCAGTTTGAGAACACGGGCCCTCCTCctgcagagaaagagaagatCTCCTCCATACCTACAGTCAACGTGTCTCAGGATCAAGCAGactGCAGTATGGAGTGTCCGGTGTGCAAGGAGGACTTTGCAGTGGGAGAGCCCGTCAGACAGCTACCCTGCAACCACTTCTTCCACTCAGACTGTATAGTACCCTGGCTGGAAATGcaTGATACGTGTCCTGTGTGTAGGAAGGGGTTGAATGGAGAAGACAGCAACACCCAGAACCCCCCAGAATCCCCCTCTCTAAATACGGACCCCCGCACACAGGAGAGATGGTCCTTCTGAAATACAcctccccctcatccctccatccccttatCGCACCTCTCATCTGACCTCCTTTTAATCTCTCATCTGTCCTTCATTCTACTTTTTTGACCCTCATCCCCCCCTTCTCTACAAACTACTGCACACGGGAGATAAGGACTTTCTGAAGGATAGACCTCCTCCATCTCTGCCTCATTCCTCCGTGTCATTCCTTcatctcactcctcctctctgaaTCATCTCTTCATCGATGGTCATCTCAGTTTGGCTGTTCCTGTCTCAATGCCCCTGGAACCATGttcacacagagtacacacacacgtcATGATCTATTAGCTGTCCTCTGCCTCATCATGACCAAGCACTTGCCTTTACCTCGCTTCAAACATCAACCACATCTCGCTTTTTCTACTCTTTTCTCCATATTTCTCTTTTTCCATCCTTCTGAAAAGCACTGCTGTAAAACAATGttgtctctccctacctctctactcCTGggatgcatctcaatagtctagtggcttcctctcctcttcatctgcaCTGAACATGGCAGATGCTCACCGGGAATTTGGTTTTGCCTTTCTAGCTCTGTCACATCAGTGCAGAAAGGAGACATCATTTTGACTATTGAGACGGGCCCCACAACAATCTTTCGCTGTCATTCTGGTGTATATATATTAAACAGATTGCATCGCTCTGTCATTTTACTCCTCTGTTGATGACTTGTCTTTTGTTTCACATTTCTATCACtctatttttttaatgtaaatactTTTAGTCCAACATCTTCTGGTTTGAGAAGAGAACAACAAAGCATATTGAGAATGGAGACAAATGTGAATCCCTGGGTATTAGtctgtatattattatatatatgaTAACATGTATGATGTATTAATAAATCAACAAAAATATTAAAAACCATTAACATTGA

Function

NR:

description
E3 ubiquitin-protein ligase RNF115-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598295.2 False 1972 mRNA 0.50 9 17515084 17523081
XM_021598294.2 True 1976 mRNA 0.50 9 17515084 17523082

Neighbor

gene id symbol gene type direction distance location
LOC110520799 ash1l coding downstream 30800 17455727 ~ 17484284 (-)
LOC110520880 LOC106605923 coding downstream 132400 17378012 ~ 17382684 (-)
LOC118944170 NA coding downstream 133696 17381253 ~ 17381388 (-)
LOC118944171 NA coding downstream 134129 17380819 ~ 17380955 (-)
LOC110519673 LOC106605887 coding downstream 373516 17073218 ~ 17141568 (-)
itga10 LOC106595728 coding upstream 9605 17532687 ~ 17603672 (-)
crabp2a LOC106605806 coding upstream 101052 17624134 ~ 17636768 (-)
LOC110536309 LOC106574682 coding upstream 140111 17663193 ~ 17666667 (-)
arnt arnt coding upstream 144800 17667882 ~ 17681708 (-)
LOC110536315 LOC105018975 coding upstream 162915 17685997 ~ 17722111 (-)
G118578 NA non-coding downstream 9310 17505305 ~ 17505774 (-)
G118575 NA non-coding downstream 12238 17501611 ~ 17502846 (-)
G118572 NA non-coding downstream 16661 17498155 ~ 17498423 (-)
G118527 NA non-coding downstream 18747 17496115 ~ 17496337 (-)
G118521 LOC106605797 non-coding downstream 60369 17448699 ~ 17454715 (-)
G118582 polr3c non-coding upstream 1481 17524563 ~ 17532233 (-)
G118629 NA non-coding upstream 106522 17629604 ~ 17630375 (-)
G118660 NA non-coding upstream 202101 17725183 ~ 17725386 (-)
G118662 NA non-coding upstream 204609 17727691 ~ 17727951 (-)
G118663 NA non-coding upstream 205572 17728654 ~ 17729002 (-)
G118494 NA other downstream 183056 17331115 ~ 17332028 (-)
G118456 LOC100380853 other downstream 262808 17244124 ~ 17252276 (-)
LOC110534246 LOC106605885 other downstream 419968 17094247 ~ 17121323 (-)
G118392 NA other downstream 459960 17051181 ~ 17055124 (-)
G118606 NA other upstream 158940 17682022 ~ 17710023 (-)
LOC118938160 LOC106574957 other upstream 386411 17809976 ~ 17919784 (-)
LOC110536375 LOC106575046 other upstream 476391 17999431 ~ 18009077 (-)
LOC110536462 LOC108436080 other upstream 609392 18127347 ~ 18153075 (-)

Expression


Co-expression Network