polr3c (LOC106605790)


Basic Information

Item Value
gene id polr3c
gene name LOC106605790
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17523084 ~ 17532237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939811.1
TGCGCAACTCTTTGGGAAAATAAGCTTACCTGTGAGGGCGGAAATTCGTTGTGTTGTGGCGCTGGCAATCACATGTGTTTGGGATTCTGAAGTTGTTTTGCGAGGATTCTCCCGAAACTCATTTCATGATCTGAAAAGGGTGTTTTGCAGAGCATATGACTGCCCAGGAGGTGCGGCTGTGTGGCCTGCTGCTACAGGAGCACTTTGGAGAGGTGGTGGAGAGGATAGGCACTCACCTGCTCAGAGGAGGGGCACAGAACCTCAGGACCATCGCCAATGAGACCAACACACCACTGGACCTGCACGGTGCTTGTGAGTTCGGGTCGGGCCGGCGAGGCCCCGGGAGCCCAGTGGAGTACCGGGCCAACTGTGAGCGGGTTCTAAGGGTTCTGCGGTACCCGCGGTACATCTACACAGCTAAGACCCTGTATGGAGACACAGGAGAACTCATCGTGGAGGAGGTCCTACAACGAGGCCATATGACCATGAGCAACACGGTCAAGACTGTAGCTGACCGACTCACTCATAACAtggaggAGGGTCGTAGTATGGAGTACAGTGAGGTGGTCTCAGCCTTCTCTAAGCTGGTGGAGACTCACTTCCTGCAGCGCTGTCCTCCGGTGGCCGAGATGGGAACTGCAGCCTCCTCCACTACCCCGGCGACCCCCAGCACCCCTGCCGCCCCCGCCTCCACTGCCCCCCCAACAGCAGAGAGCAACCCCGACTGCTACAAGCTGCCCCATGTCACACTCATAGGTCGTGGGAAGCGCAGACGCTCCAGTGACGATagtgaggagcagagaggagggaagaaagcCAAGATGGAGGTAGAGtCGTGTGGTGATGAGGGGATCTACTGGCAGGTGAACTTTGAGAGGTTCCATCAGCACTTCAGAGACCAGGCTGTCATTAGTGCTGTGGCCAGCAAACTGGACCAGACCAGTAGTGAGATAGTGAGGACTATGTTGAGGATGAGTGAGGTTACCACCACACAGACTGCCGCCTACACTCAGCCCCTCTCAGCCAATGAGATCTTCCGCTCCCTCCCGCCCAACTACAGCATCAGCAGACCAATCCTGGACCAGTACCTCTCCCTTCTGGTGGATGACCCGaTGGAGTTTGTGGGGAAATCAGGTGACAGTGGAGGAGGAATGTACGTGGTCAATCTCCAAAGAGCCCTGGCCAACCTGGCGAGAGCCACACTGGAGTCTGTGGTACAGGAGAGGTTTGGCTCGCGGTCGGCTAGGATCTTCCGTCTGTTGCTAAGGAAACGTCACTTGGAGCAGAAGCAGGTGGAGGACTTTGCTATGATCCCTGCCAAGGAGGCCAAAGACATGCTGTACACACTGCTGTCAGAGAACCTGGTAcagctacagGAAATCCCTAAGACTCCTGACCACGCCCCTTCACGTACCTTCTACCTGTACACTGTCAACCAGCTGCCTACTGCCCGCCTACTGCTACAACACTGCTACAAGACAGTGGCTAATCTGATTGAGAGGCGCCTCTTCGAGACCAAGGAGAACAAGCGTCTGCTGGAGAAGTCCCAGCGAATCGAGGCGATCCTGGCATCGCTGCAGGCCAGTGGGGCGGAGCCTGAACAGCTGACAGAGGTGGAAGAGATGATCACTGCCCCCGAGAGACAGCAGCTAGAAGCCCTGCGACATCACATCAACAAGTTGGACTCTACAGAGAACCAGGTGGATGAGACTGTCTTTCTTCTGGAGTCCTACATCTTCTCTACCAAGAccaagtgagagggagggaggggagaaactcAATGGACATAAAGCTGCATCAATAAAATCTGTTTGGGTTTTCATATACCTGTGCTTTTTCTGCCTGACATACAGGCGTCGTTATTTCAGTTATGTGTTCAACAATGTCTGCTAGTGTGAAAGTGTTTATTCTTTTATAGAATGAAGTAGTCTGAAATGCcagattaaaaataaaaagttatGTAATAAAA
>XM_036939797.1
GCGCAACTCTTTGGGAAAATAAGCTTACCTGTGAGGGCGGAAATTCGTTGTGTTGTGGCGCTGGCAATCACATGTGTTTGGGATTCTGAAGTTGTTTTGCGAGGATTCTCCCGAAACTCATTTCATGATCTGAAAAGGGTGTTTTGCAGAGCATATGACTGCCCAGGAGGTGCGGCTGTGTGGCCTGCTGCTACAGGAGCACTTTGGAGAGGTGGTGGAGAGGATAGGCACTCACCTGCTCAGAGGAGGGGCACAGAACCTCAGGACCATCGCCAATGAGACCAACACACCACTGGACCTGGTGAagaagtctctgtgtgtgttggtacagCACGGTGCTTGTGAGTTCGGGTCGGGCCGGCGAGGCCCCGGGAGCCCAGTGGAGTACCGGGCCAACTGTGAGCGGGTTCTAAGGGTTCTGCGGTACCCGCGGTACATCTACACAGCTAAGACCCTGTATGGAGACACAGGAGAACTCATCGTGGAGGAGGTCCTACAACGAGGCCATATGACCATGAGCAACACGGTCAAGACTGTAGCTGACCGACTCACTCATAACAtggaggAGGGTCGTAGTATGGAGTACAGTGAGGTGGTCTCAGCCTTCTCTAAGCTGGTGGAGACTCACTTCCTGCAGCGCTGTCCTCCGGTGGCCGAGATGGGAACTGCAGCCTCCTCCACTACCCCGGCGACCCCCAGCACCCCTGCCGCCCCCGCCTCCACTGCCCCCCCAACAGCAGAGAGCAACCCCGACTGCTACAAGCTGCCCCATGTCACACTCATAGGTCGTGGGAAGCGCAGACGCTCCAGTGACGATagtgaggagcagagaggagggaagaaagcCAAGATGGAGGTAGAGtCGTGTGGTGATGAGGGGATCTACTGGCAGGTGAACTTTGAGAGGTTCCATCAGCACTTCAGAGACCAGGCTGTCATTAGTGCTGTGGCCAGCAAACTGGACCAGACCAGTAGTGAGATAGTGAGGACTATGTTGAGGATGAGTGAGGTTACCACCACACAGACTGCCGCCTACACTCAGCCCCTCTCAGCCAATGAGATCTTCCGCTCCCTCCCGCCCAACTACAGCATCAGCAGACCAATCCTGGACCAGTACCTCTCCCTTCTGGTGGATGACCCGaTGGAGTTTGTGGGGAAATCAGGTGACAGTGGAGGAGGAATGTACGTGGTCAATCTCCAAAGAGCCCTGGCCAACCTGGCGAGAGCCACACTGGAGTCTGTGGTACAGGAGAGGTTTGGCTCGCGGTCGGCTAGGATCTTCCGTCTGTTGCTAAGGAAACGTCACTTGGAGCAGAAGCAGGTGGAGGACTTTGCTATGATCCCTGCCAAGGAGGCCAAAGACATGCTGTACACACTGCTGTCAGAGAACCTGGTAcagctacagGAAATCCCTAAGACTCCTGACCACGCCCCTTCACGTACCTTCTACCTGTACACTGTCAACCAGCTGCCTACTGCCCGCCTACTGCTACAACACTGCTACAAGACAGTGGCTAATCTGATTGAGAGGCGCCTCTTCGAGACCAAGGAGAACAAGCGTCTGCTGGAGAAGTCCCAGCGAATCGAGGCGATCCTGGCATCGCTGCAGGCCAGTGGGGCGGAGCCTGAACAGCTGACAGAGGTGGAAGAGATGATCACTGCCCCCGAGAGACAGCAGCTAGAAGCCCTGCGACATCACATCAACAAGTTGGACTCTACAGAGAACCAGGTGGATGAGACTGTCTTTCTTCTGGAGTCCTACATCTTCTCTACCAAGAccaagtgagagggagggaggggagaaactcAATGGACATAAAGCTGCATCAATAAAATCTGTTTGGGTTTTCATATACCTGTGCTTTTTCTGCCTGACATACAGGCGTCGTTATTTCAGTTATGTGTTCAACAATGTCTGCTAGTGTGAAAGTGTTTATTCTTTTATAGAATGAAGTAGTCTGAAATGCcagattaaaaataaaaagttatGTAATAAAA
>XM_036939802.1
GCGCAACTCTTTGGGAAAATAAGCTTACCTGTGAGGGCGGAAATTCGTTGTGTTGTGGCGCTGGCAATCACATGTGTTTGGGATTCTGAAGTTGTTTTGCGAGGATTCTCCCGAAACTCATTTCATGATCTGAAAAGGGTGTTTTGCAGAGCATATGACTGCCCAGGAGGTGCGGCTGTGTGGCCTGCTGCTACAGGAGCACTTTGGAGAGGTGGTGGAGAGGATAGGCACTCACCTGCTCAGAGGAGGGGCACAGAACCTCAGGACCATCGCCAATGAGACCAACACACCACTGGACCTGGTGAagaagtctctgtgtgtgttggtacagCACGGTGCTTGTGAGTTCGGGTCGGGCCGGCGAGGCCCCGGGAGCCCAGTGGAGTACCGGGCCAACTGTGAGCGGGTTCTAAGGGTTCTGCGGTACCCGCGGTACATCTACACAGCTAAGACCCTGTATGGAGACACAGGAGAACTCATCGTGGAGGAGGTCCTACAACGAGGCCATATGACCATGAGCAACACGGTCAAGACTGTAGCTGACCGACTCACTCATAACAtggaggAGGGTCGTAGTATGGAGTACAGTGAGGTGGTCTCAGCCTTCTCTAAGCTGGTGGAGACTCACTTCCTGCAGCGCTGTCCTCCGGTGGCCGAGATGGGAACTGCAGCCTCCTCCACTACCCCGGCGACCCCCAGCACCCCTGCCGCCCCCGCCTCCACTGCCCCCCCAACAGCAGAGAGCAACCCCGACTGCTACAAGCTGCCCCATGTCACACTCATAGGTCGTGGGAAGCGCAGACGCTCCAGTGACGATagtgaggagcagagaggagggaagaaagcCAAGATGGAGtCGTGTGGTGATGAGGGGATCTACTGGCAGGTGAACTTTGAGAGGTTCCATCAGCACTTCAGAGACCAGGCTGTCATTAGTGCTGTGGCCAGCAAACTGGACCAGACCAGTAGTGAGATAGTGAGGACTATGTTGAGGATGAGTGAGGTTACCACCACACAGACTGCCGCCTACACTCAGCCCCTCTCAGCCAATGAGATCTTCCGCTCCCTCCCGCCCAACTACAGCATCAGCAGACCAATCCTGGACCAGTACCTCTCCCTTCTGGTGGATGACCCGaTGGAGTTTGTGGGGAAATCAGGTGACAGTGGAGGAGGAATGTACGTGGTCAATCTCCAAAGAGCCCTGGCCAACCTGGCGAGAGCCACACTGGAGTCTGTGGTACAGGAGAGGTTTGGCTCGCGGTCGGCTAGGATCTTCCGTCTGTTGCTAAGGAAACGTCACTTGGAGCAGAAGCAGGTGGAGGACTTTGCTATGATCCCTGCCAAGGAGGCCAAAGACATGCTGTACACACTGCTGTCAGAGAACCTGGTAcagctacagGAAATCCCTAAGACTCCTGACCACGCCCCTTCACGTACCTTCTACCTGTACACTGTCAACCAGCTGCCTACTGCCCGCCTACTGCTACAACACTGCTACAAGACAGTGGCTAATCTGATTGAGAGGCGCCTCTTCGAGACCAAGGAGAACAAGCGTCTGCTGGAGAAGTCCCAGCGAATCGAGGCGATCCTGGCATCGCTGCAGGCCAGTGGGGCGGAGCCTGAACAGCTGACAGAGGTGGAAGAGATGATCACTGCCCCCGAGAGACAGCAGCTAGAAGCCCTGCGACATCACATCAACAAGTTGGACTCTACAGAGAACCAGGTGGATGAGACTGTCTTTCTTCTGGAGTCCTACATCTTCTCTACCAAGAccaagtgagagggagggaggggagaaactcAATGGACATAAAGCTGCATCAATAAAATCTGTTTGGGTTTTCATATACCTGTGCTTTTTCTGCCTGACATACAGGCGTCGTTATTTCAGTTATGTGTTCAACAATGTCTGCTAGTGTGAAAGTGTTTATTCTTTTATAGAATGAAGTAGTCTGAAATGCcagattaaaaataaaaagttatGTAATAAAA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description
K03023 RPC3, POLR3C; DNA-directed RNA polymerase III subunit RPC3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939811.1 False 1969 mRNA 0.54 14 17523084 17532237
XM_036939797.1 False 1998 mRNA 0.54 14 17523085 17532237
XM_036939802.1 True 1992 mRNA 0.54 14 17523085 17532237

Neighbor

gene id symbol gene type direction distance location
gba gba coding upstream 8057 17506575 ~ 17515027 (+)
dap3 LOC106605893 coding upstream 27116 17484825 ~ 17495968 (+)
rusc1 LOC106605889 coding upstream 70598 17426432 ~ 17452486 (+)
fdps LOC106605924 coding upstream 97088 17422056 ~ 17425996 (+)
LOC110520798 fam189b coding upstream 109195 17395343 ~ 17421816 (+)
LOC110536418 LOC106575022 coding downstream 484558 18016795 ~ 18047915 (+)
LOC110536431 LOC107573682 coding downstream 520268 18052505 ~ 18071232 (+)
trim108 LOC106573777 coding downstream 544734 18076971 ~ 18086938 (+)
LOC110536448 NA coding downstream 558071 18090308 ~ 18094143 (+)
LOC110536617 NA coding downstream 745424 18277408 ~ 18278953 (+)
G117865 NA non-coding upstream 21880 17500646 ~ 17501204 (+)
G117864 NA non-coding upstream 22854 17499938 ~ 17500230 (+)
G117842 NA non-coding upstream 79472 17442891 ~ 17443612 (+)
G117839 NA non-coding upstream 115286 17406203 ~ 17407798 (+)
G117883 NA non-coding downstream 4283 17536520 ~ 17543637 (+)
G117943 NA non-coding downstream 128547 17660784 ~ 17661055 (+)
G117926 NA non-coding downstream 151450 17683687 ~ 17686455 (+)
G117959 NA non-coding downstream 190524 17722761 ~ 17723043 (+)
G117960 NA non-coding downstream 191007 17723244 ~ 17723459 (+)
G117735 NA other upstream 65062 17455765 ~ 17458022 (+)
G117714 LOC106605886 other upstream 449383 17073201 ~ 17073701 (+)
G117704 NA other upstream 472245 17050132 ~ 17050839 (+)
LOC110536275 s10i other upstream 524723 16995630 ~ 16998361 (+)
LOC110536658 LOC106577300 other downstream 925121 18457284 ~ 18481741 (+)
G119153 LOC106605761 other downstream 1101602 18633839 ~ 18636041 (+)
G119160 NA other downstream 1138276 18670513 ~ 18672320 (+)
G119245 stl2 other downstream 1426899 18934673 ~ 18992769 (+)
LOC110503718 LOC102193556 other downstream 1724349 19131905 ~ 19259074 (+)

Expression


Co-expression Network