crabp2a (LOC106605806)


Basic Information

Item Value
gene id crabp2a
gene name LOC106605806
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17624134 ~ 17636768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598320.2
GGCTAgttttccattccatccattcatAGCGCAACCGCTCATAACGTGCACTGACGCATAGGCGAGATAGGGATcagcgagggagagacagagagagggttggattagGGCACTGACAGCCACTTCAGTCAAACAGTTGAGAGACACACGGTCACAACCAGCTGAGGGGGCAAAACTAGCGGGACCGGAAAGTCTAAATCCAATCCAGATCACCTCTTAGCCGGTTAGGGAGAGAGGACCACCGACCACCTCGAGACCCGCACTGATTGAAAAGAGGGCAGAGTTGGAGAGTAAAACAATCAGTTTAGAAAAAGATGGAGAGCAAAATCCCTGACTTCGCTGGTACCTGGAAGATGAAGAACTCGGAGAACTTCGAGGAGCTTCTCAAAGCGCTGGGTGTGAACGTGATGCTGCGTAAGATAGCGGTGGCAGCAGCCTCCAAGCCGTCGGTGGAGATCACCCAGGAGGGAGAAACTCTGTCCATACGAACCTTCACCTCCGTCAGAACCACCCACGTCACCTTCACCGTGGGAGAGTCCTTCAACGAGGCCACGGTCGACGGACGCCCCTGCACgaGTCTTCCAAAGTGGGAGACAGACAGTAAGATCAGCTGTGAGCAGACTCTGCAGAAAGGGGAGGGACCTAAGACCGCCTGGACCCGAGAAATAACCAATGACGGCGAGCTCATCCTGACCATGAGTGCAGACGATGTGGTGTGCACCAGAGTCTACGTACGAGAGTGAAAGAGAAGACAACTCTTCATCCTTCCATCTATCtcaccactcactcactcactcactcactcactccacaAACCCCCAGCCAGAATGGGCAGGGTGAAATCAGCTTGTAGAATCTAGTTTAACTCCAGTATATCTGTCACAAAGCCATGGGATTGAACCCAGTCTAGTTGACCTATATCTATTAAAGTCAGTCTTGCCAATGCTCTGTCCACTTACTCAGTGAGGTCGTAAACCTGAAATTGTGTCTTTTTCTGAGTCTTTGTACGTGCAAGGTTGTtgatccatgtgtgtgtgtatgtgtgtgtctgtgtgtgtacgtgctagTCAGTGGAGTTGGTCtaagtgtgtgtatcagtgtctgACTATATTTGTAGTTGTGTAAACCTGTCTATGAGCTCTTCCAGTTATAAGGTCAGTTACtttgtttctctttctccttctctcttccctcttatCTCTAAGTCGATAAAGTTGTATATTTATTACACTACTAGATCTGATACCGTGTTGCTATGGTTTTTACTTTGTCTCTTTTATATAAAATCTGATCATAGGAAATTATACTTTCTATGGGAAGACAATAAAACACCATGTTGACTACA

Function

NR:

description
cellular retinoic acid-binding protein 2-like

GO:

id name namespace
GO:0021575 hindbrain morphogenesis biological_process
GO:0006810 transport biological_process
GO:0048385 regulation of retinoic acid receptor signaling pathway biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG:

id description
K17289 CRABP2; cellular retinoic acid-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598320.2 True 1345 mRNA 0.48 4 17624134 17636768

Neighbor

gene id symbol gene type direction distance location
itga10 LOC106595728 coding downstream 20462 17532687 ~ 17603672 (-)
rnf115 LOC106591015 coding downstream 101052 17515084 ~ 17523082 (-)
LOC110520799 ash1l coding downstream 139850 17455727 ~ 17484284 (-)
LOC110520880 LOC106605923 coding downstream 241450 17378012 ~ 17382684 (-)
LOC110536309 LOC106574682 coding upstream 26425 17663193 ~ 17666667 (-)
arnt arnt coding upstream 31114 17667882 ~ 17681708 (-)
LOC110536315 LOC105018975 coding upstream 49229 17685997 ~ 17722111 (-)
LOC110519442 LOC105018974 coding upstream 97170 17733938 ~ 17808531 (-)
LOC118938160 LOC106574957 coding upstream 173208 17809976 ~ 17919784 (-)
G118582 polr3c non-coding downstream 91901 17524563 ~ 17532233 (-)
G118578 NA non-coding downstream 118360 17505305 ~ 17505774 (-)
G118575 NA non-coding downstream 121288 17501611 ~ 17502846 (-)
G118572 NA non-coding downstream 125711 17498155 ~ 17498423 (-)
G118527 NA non-coding downstream 127797 17496115 ~ 17496337 (-)
G118660 NA non-coding upstream 88415 17725183 ~ 17725386 (-)
G118662 NA non-coding upstream 90923 17727691 ~ 17727951 (-)
G118663 NA non-coding upstream 91886 17728654 ~ 17729002 (-)
G118637 NA non-coding upstream 98669 17735437 ~ 17737812 (-)
G118494 NA other downstream 292106 17331115 ~ 17332028 (-)
G118456 LOC100380853 other downstream 371858 17244124 ~ 17252276 (-)
LOC110534246 LOC106605885 other downstream 529018 17094247 ~ 17121323 (-)
G118392 NA other downstream 569010 17051181 ~ 17055124 (-)
G118606 NA other upstream 45254 17682022 ~ 17710023 (-)
LOC110536375 LOC106575046 other upstream 362705 17999431 ~ 18009077 (-)
LOC110536462 LOC108436080 other upstream 495706 18127347 ~ 18153075 (-)

Expression


Co-expression Network