Item | Value |
---|---|
gene id | arnt |
gene name | arnt |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048566.1 |
NCBI id | CM023220.2 |
chromosome length | 103806877 |
location | 17667882 ~ 17681708 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
arnt | Enables sequence-specific DNA binding activity. Acts upstream of or within positive regulation of transcription, DNA-templated; response to toxic substance; and response to xenobiotic stimulus. Predicted to be located in cytoplasm. Predicted to be part of aryl hydrocarbon receptor complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in renal cell carcinoma. Orthologous to human ARNT (aryl hydrocarbon receptor nuclear translocator). |
description |
---|
aryl hydrocarbon receptor nuclear translocator |
id | name | namespace |
---|---|---|
GO:0045892 | negative regulation of transcription, DNA-templated | biological_process |
GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
GO:0009967 | positive regulation of signal transduction | biological_process |
GO:0009968 | negative regulation of signal transduction | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0005667 | transcription regulator complex | cellular_component |
GO:0005737 | cytoplasm | cellular_component |
GO:0003677 | DNA binding | molecular_function |
GO:0004871 | obsolete signal transducer activity | molecular_function |
GO:0003700 | DNA-binding transcription factor activity | molecular_function |
GO:0003714 | transcription corepressor activity | molecular_function |
GO:0017162 | aryl hydrocarbon receptor binding | molecular_function |
GO:0046982 | protein heterodimerization activity | molecular_function |
id | description |
---|---|
K09097 | ARNT; aryl hydrocarbon receptor nuclear translocator |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036933293.1 | False | 4137 | mRNA | 0.49 | 16 | 17667882 | 17679842 |
XM_036933277.1 | False | 4524 | mRNA | 0.48 | 18 | 17667882 | 17681693 |
XM_036933284.1 | False | 4497 | mRNA | 0.48 | 18 | 17667882 | 17681693 |
XM_036933273.1 | False | 4632 | mRNA | 0.48 | 19 | 17667882 | 17681702 |
XM_036933255.1 | False | 4660 | mRNA | 0.48 | 19 | 17667882 | 17681706 |
XM_036933290.1 | False | 4466 | mRNA | 0.48 | 18 | 17667882 | 17681707 |
XM_036933267.1 | False | 4659 | mRNA | 0.48 | 19 | 17667882 | 17681708 |
NM_001124710.1 | True | 3482 | mRNA | 0.51 | 20 | 17668635 | 17681431 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110536309 | LOC106574682 | coding | downstream | 1215 | 17663193 ~ 17666667 (-) |
crabp2a | LOC106605806 | coding | downstream | 31114 | 17624134 ~ 17636768 (-) |
itga10 | LOC106595728 | coding | downstream | 64210 | 17532687 ~ 17603672 (-) |
rnf115 | LOC106591015 | coding | downstream | 144800 | 17515084 ~ 17523082 (-) |
LOC110520799 | ash1l | coding | downstream | 183598 | 17455727 ~ 17484284 (-) |
LOC110536315 | LOC105018975 | coding | upstream | 4289 | 17685997 ~ 17722111 (-) |
LOC110519442 | LOC105018974 | coding | upstream | 52230 | 17733938 ~ 17808531 (-) |
LOC118938160 | LOC106574957 | coding | upstream | 128268 | 17809976 ~ 17919784 (-) |
tars2 | LOC100380759 | coding | upstream | 249524 | 17931232 ~ 17947821 (-) |
LOC110536358 | LOC106605802 | coding | upstream | 270673 | 17952381 ~ 17966181 (-) |
G118629 | NA | non-coding | downstream | 37507 | 17629604 ~ 17630375 (-) |
G118582 | polr3c | non-coding | downstream | 135649 | 17524563 ~ 17532233 (-) |
G118578 | NA | non-coding | downstream | 162108 | 17505305 ~ 17505774 (-) |
G118575 | NA | non-coding | downstream | 165036 | 17501611 ~ 17502846 (-) |
G118572 | NA | non-coding | downstream | 169459 | 17498155 ~ 17498423 (-) |
G118660 | NA | non-coding | upstream | 43475 | 17725183 ~ 17725386 (-) |
G118662 | NA | non-coding | upstream | 45983 | 17727691 ~ 17727951 (-) |
G118663 | NA | non-coding | upstream | 46946 | 17728654 ~ 17729002 (-) |
G118637 | NA | non-coding | upstream | 53729 | 17735437 ~ 17737812 (-) |
G118494 | NA | other | downstream | 335854 | 17331115 ~ 17332028 (-) |
G118456 | LOC100380853 | other | downstream | 415606 | 17244124 ~ 17252276 (-) |
LOC110534246 | LOC106605885 | other | downstream | 572766 | 17094247 ~ 17121323 (-) |
G118606 | NA | other | upstream | 314 | 17682022 ~ 17710023 (-) |
LOC110536375 | LOC106575046 | other | upstream | 317765 | 17999431 ~ 18009077 (-) |
LOC110536462 | LOC108436080 | other | upstream | 450766 | 18127347 ~ 18153075 (-) |
LOC110534274 | LOC105018985 | other | upstream | 480601 | 18157725 ~ 18188504 (-) |