LOC110536315 (LOC105018975)


Basic Information

Item Value
gene id LOC110536315
gene name LOC105018975
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17685997 ~ 17722111 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939874.1
AGGAATTTCTATATCTACAATtATGGTGTCCAGTCTGAGCGAGTGGTTCTGGAATGAGCGGCTGTGGTTCCCTGAGGGGCTGGGTTGGGCTGACCTGGAGGACAAAGATGGCCGTGTTTACGCCAAGGCCAGCGACCTTTGGGTGGTGCTACCCATCGCCCTAGCCTTCCTCGTAATACGACAGATCTTCGAGAGGTTAGTGGCCACCCCACTGGCTGCTGTCATGGGGGTGAAGGAGAAAGTTCGGCTCATAGTCTCACACAACCCCACACTGGAGTCCTTCTACTGTAACACAACCAAGAACCCCTCACAGAGTTCTATAGACAGTCTGTGTAAGCAGACAGGTTGTTCAGAGAGACAGGTGCAGAGATGGTTCAGGAGACGCAGGAACCAGGACCGACCCAGTCTACTGAAGAAGTTCAAAGAGGCCAgTTGGAGATTCACCTTTTACCTTCTTGCTTTCATTGCTGGCCTGGCTGCCCTCATTGACaaaCCCTGGCTGTATGACTTTAAGGAGATGTGGCAGGGCTTCCCTATTCTGACTCTCCTGCCGTCTCAGTATTGGTACTATATGATAGAGCTGGGTTTCTACGTCTCTCTAATCTTCAGTGTGGCATCAGACGTCAAACGGAAAGACTTTAAGGAGCAGATGGTTCACCATATGGCCACCATCTTCCTCATCAGTTTCTCCTGGTGTGTCAACTACATCAGAGCGGGCACGCTCATCATGCTGCTGCACGACTCCTCCGACTATTTACTGGAGTCCGCTAAGATATTCATCTATGCTGGATGGAGAAACACCAGTAACTACGTCTTCTTCCTCTTCGCTGCCGTCTTCATCTTCACTAGACTCTATATCTTCCCCTTCTAcatcATTTATTCTACGTACATTTATCCAATGACTATGTACTCTCCGTTCTTTGGATACTACTTCCTGAATTTCCTTATGATGGTGCTGCAGTGTCTCCATATCTTCTGGGCCATCCTCATTCTGCGTATGGCCGTCCGCTTCCTGAGCAGCGATGAAAAGGTGGAGGACGAGAGGAGCGATAAAGAAGAGACAGACGAgtcaggggaggaagaggagggggtggagaagaAAGGTGCGGTGCAGAATGGTCACGCCGCTCACAACAACCACCGCAAGACGGAGTAATGAAAACGTGTGCCAGGAAGTAAGAGTGTGAAGAATTCACATCCCTCACTCAGCAGagtaggagagatggagggaaggggaaagggagagatggagggaagggagagatggagggaaggggaagggagagatggag
>XM_036939855.1
TCCTCCCAGTTATTTTCTATTTCACTCCTAGTCTCACCCCTCTCGCGGTCCGTTCTCCAGACGCAGCAGCTCGGCTGGTATACACCTATTCTCGGCCAACCACCCCTGTcccacagagagaagagaaagaataCGTGGGACACACGAAAGATAAAGTATCCTAGCTTTTGTAGTTTAGATTTATCCAGGACAATCAGAGCGGATATCCATCGACACAGAAAGAAACCCCGCCTTTACTCGTCTCGCGGTCTCTCAACTTCTCCCACCTACTCTTTCTTTTTATCTCAATCCTTCTTTCTATTAAAATAGTTTTTGACTGGATGGAAAGATGTGGATAAACTGCGGAAGTGGTCAGGTCGAACCCTAATCTAAAACAACGAGACACCCGGGCCGTCACGAACGCAGCAGGCAGAATATATTCAACAGGACGGAGCTATACTTTCTCTGGTTGGACTGATTTTCTGCTGAGCGGTCGAACTTTCTGAAATTTGCATATAGGCTACTGCTATCTGTTCCGTGTGCTCTAACCCAAAGTCTCATACATCGCCTTGGACCTCAGTGAGAGGGGATTGGGACCAAAtATGGTGTCCAGTCTGAGCGAGTGGTTCTGGAATGAGCGGCTGTGGTTCCCTGAGGGGCTGGGTTGGGCTGACCTGGAGGACAAAGATGGCCGTGTTTACGCCAAGGCCAGCGACCTTTGGGTGGTGCTACCCATCGCCCTAGCCTTCCTCGTAATACGACAGATCTTCGAGAGGTTAGTGGCCACCCCACTGGCTGCTGTCATGGGGGTGAAGGAGAAAGTTCGGCTCATAGTCTCACACAACCCCACACTGGAGTCCTTCTACTGTAACACAACCAAGAACCCCTCACAGAGTTCTATAGACAGTCTGTGTAAGCAGACAGGTTGTTCAGAGAGACAGGTGCAGAGATGGTTCAGGAGACGCAGGAACCAGGACCGACCCAGTCTACTGAAGAAGTTCAAAGAGGCCAgTTGGAGATTCACCTTTTACCTTCTTGCTTTCATTGCTGGCCTGGCTGCCCTCATTGACaaaCCCTGGCTGTATGACTTTAAGGAGATGTGGCAGGGCTTCCCTATTCTGACTCTCCTGCCGTCTCAGTATTGGTACTATATGATAGAGCTGGGTTTCTACGTCTCTCTAATCTTCAGTGTGGCATCAGACGTCAAACGGAAAGACTTTAAGGAGCAGATGGTTCACCATATGGCCACCATCTTCCTCATCAGTTTCTCCTGGTGTGTCAACTACATCAGAGCGGGCACGCTCATCATGCTGCTGCACGACTCCTCCGACTATTTACTGGAGTCCGCTAAGATATTCATCTATGCTGGATGGAGAAACACCAGTAACTACGTCTTCTTCCTCTTCGCTGCCGTCTTCATCTTCACTAGACTCTATATCTTCCCCTTCTAcatcATTTATTCTACGTACATTTATCCAATGACTATGTACTCTCCGTTCTTTGGATACTACTTCCTGAATTTCCTTATGATGGTGCTGCAGTGTCTCCATATCTTCTGGGCCATCCTCATTCTGCGTATGGCCGTCCGCTTCCTGAGCAGCGATGAAAAGGTGGAGGACGAGAGGAGCGATAAAGAAGAGACAGACGAgtcaggggaggaagaggagggggtggagaagaAAGGTGCGGTGCAGAATGGTCACGCCGCTCACAACAACCACCGCAAGACGGAGTAATGAAAACGTGTGCCAGGAAGTAAGAGTGTGAAGAATTCACATCCCTCACTCAGCAGagtaggagagatggagggaaggggaaagggagagatggagggaagggagagatggagggaaggggaagggagagatggag
>XM_036939861.1
TTCCTCCCAGTTATTTTCTATTTCACTCCTAGTCTCACCCCTCTCGCGGTCCGTTCTCCAGACGCAGCAGCTCGGCTGGTATACACCTATTCTCGGCCAACCACCCCTGTcccacagagagaagagaaagaataCGTGGGACACACGAAAGATAAAGTATCCTAGCTTTTGTAGTTTAGATTTATCCAGGACAATCAGAGCGGATATCCATCGACACAGAAAGAAACCCCGCCTTTACTCGTCTCGCGGTCTCTCAACTTCTCCCACCTACTCTTTCTTTTTATCTCAATCCTTCTTTCTATTAAAATAGTTTTTGACTGGATGGAAAGATGTGGATAAACTGCGGAAGTGGTCAGGTCGAACCCTAATCTAAAACAACGAGACACCCGGGCCGTCACGAACGCAGCAGGCAGAATATATTCAACAGGACGGAGCTATACTTTCTCTGGTTGGACTGATTTTCTGCTGAGCGGTCGAACTTTCTGAAATTTGCATATAGGCTACTGCTATCTGTTCCGTGTGCTCTAACCCAAAGTCTCATACATCGCCTTGGACCTCAGTGAGAGGGGATTGGGACCAAAggGTTGAGAAACTCTATGTTAGTGTTAGTCTGCTTTGACTACTCACATTCTCCTGTCAGACAGTGccacagaaacagagggaggaagagagatggcaCTTCCACTCTCCCATCCAGCTAGAGAGGAATCCTCCGTCTGATTGGCTCAGAAAAATGGCCAGAGTCCAGTCACATGATCCTGTCAGCCAATAGGAAGGGGAGTTGGGCTTCTGTCAGGAAAAGTGCTGTTGCAGGCTGGATCCTCTGACTGACCTGAAAAAtATGGTGTCCAGTCTGAGCGAGTGGTTCTGGAATGAGCGGCTGTGGTTCCCTGAGGGGCTGGGTTGGGCTGACCTGGAGGACAAAGATGGCCGTGTTTACGCCAAGGCCAGCGACCTTTGGGTGGTGCTACCCATCGCCCTAGCCTTCCTCGTAATACGACAGATCTTCGAGAGGTTAGTGGCCACCCCACTGGCTGCTGTCATGGGGGTGAAGGAGAAAGTTCGGCTCATAGTCTCACACAACCCCACACTGGAGTCCTTCTACTGTAACACAACCAAGAACCCCTCACAGAGTTCTATAGACAGTCTGTGTAAGCAGACAGGTTGTTCAGAGAGACAGGTGCAGAGATGGTTCAGGAGACGCAGGAACCAGGACCGACCCAGTCTACTGAAGAAGTTCAAAGAGGCCAgTTGGAGATTCACCTTTTACCTTCTTGCTTTCATTGCTGGCCTGGCTGCCCTCATTGACaaaCCCTGGCTGTATGACTTTAAGGAGATGTGGCAGGGCTTCCCTATTCTGACTCTCCTGCCGTCTCAGTATTGGTACTATATGATAGAGCTGGGTTTCTACGTCTCTCTAATCTTCAGTGTGGCATCAGACGTCAAACGGAAAGACTTTAAGGAGCAGATGGTTCACCATATGGCCACCATCTTCCTCATCAGTTTCTCCTGGTGTGTCAACTACATCAGAGCGGGCACGCTCATCATGCTGCTGCACGACTCCTCCGACTATTTACTGGAGTCCGCTAAGATATTCATCTATGCTGGATGGAGAAACACCAGTAACTACGTCTTCTTCCTCTTCGCTGCCGTCTTCATCTTCACTAGACTCTATATCTTCCCCTTCTAcatcATTTATTCTACGTACATTTATCCAATGACTATGTACTCTCCGTTCTTTGGATACTACTTCCTGAATTTCCTTATGATGGTGCTGCAGTGTCTCCATATCTTCTGGGCCATCCTCATTCTGCGTATGGCCGTCCGCTTCCTGAGCAGCGATGAAAAGGTGGAGGACGAGAGGAGCGATAAAGAAGAGACAGACGAgtcaggggaggaagaggagggggtggagaagaAAGGTGCGGTGCAGAATGGTCACGCCGCTCACAACAACCACCGCAAGACGGAGTAATGAAAACGTGTGCCAGGAAGTAAGAGTGTGAAGAATTCACATCCCTCACTCAGCAGagtaggagagatggagggaaggggaaagggagagatggagggaagggagagatggagggaaggggaagggagagatggag
>XM_036939866.1
TTCCTCCCAGTTATTTTCTATTTCACTCCTAGTCTCACCCCTCTCGCGGTCCGTTCTCCAGACGCAGCAGCTCGGCTGGTATACACCTATTCTCGGCCAACCACCCCTGTcccacagagagaagagaaagaataCGTGGGACACACGAAAGATAAAGTATCCTAGCTTTTGTAGTTTAGATTTATCCAGGACAATCAGAGCGGATATCCATCGACACAGAAAGAAACCCCGCCTTTACTCGTCTCGCGGTCTCTCAACTTCTCCCACCTACTCTTTCTTTTTATCTCAATCCTTCTTTCTATTAAAATAGTTTTTGACTGGATGGAAAGATGTGGATAAACTGCGGAAGTGGTCAGGTCGAACCCTAATCTAAAACAACGAGACACCCGGGCCGTCACGAACGCAGCAGGCAGAATATATTCAACAGGACGGAGCTATACTTTCTCTGGTTGGACTGATTTTCTGCTGAGCGGTCGAACTTTCTGAAATTTGCATATAGGCTACTGCTATCTGTTCCGTGTGCTCTAACCCAAAGTCTCATACATCGCCTTGGACCTCAGTGAGAGGGGATTGGGACCAAAACAGTGccacagaaacagagggaggaagagagatggcaCTTCCACTCTCCCATCCAGCTAGAGAGGAATCCTCCGTCTGATTGGCTCAGAAAAATGGCCAGAGTCCAGTCACATGATCCTGTCAGCCAATAGGAAGGGGAGTTGGGCTTCTGTCAGGAAAAGTGCTGTTGCAGGCTGGATCCTCTGACTGACCTGAAAAAtATGGTGTCCAGTCTGAGCGAGTGGTTCTGGAATGAGCGGCTGTGGTTCCCTGAGGGGCTGGGTTGGGCTGACCTGGAGGACAAAGATGGCCGTGTTTACGCCAAGGCCAGCGACCTTTGGGTGGTGCTACCCATCGCCCTAGCCTTCCTCGTAATACGACAGATCTTCGAGAGGTTAGTGGCCACCCCACTGGCTGCTGTCATGGGGGTGAAGGAGAAAGTTCGGCTCATAGTCTCACACAACCCCACACTGGAGTCCTTCTACTGTAACACAACCAAGAACCCCTCACAGAGTTCTATAGACAGTCTGTGTAAGCAGACAGGTTGTTCAGAGAGACAGGTGCAGAGATGGTTCAGGAGACGCAGGAACCAGGACCGACCCAGTCTACTGAAGAAGTTCAAAGAGGCCAgTTGGAGATTCACCTTTTACCTTCTTGCTTTCATTGCTGGCCTGGCTGCCCTCATTGACaaaCCCTGGCTGTATGACTTTAAGGAGATGTGGCAGGGCTTCCCTATTCTGACTCTCCTGCCGTCTCAGTATTGGTACTATATGATAGAGCTGGGTTTCTACGTCTCTCTAATCTTCAGTGTGGCATCAGACGTCAAACGGAAAGACTTTAAGGAGCAGATGGTTCACCATATGGCCACCATCTTCCTCATCAGTTTCTCCTGGTGTGTCAACTACATCAGAGCGGGCACGCTCATCATGCTGCTGCACGACTCCTCCGACTATTTACTGGAGTCCGCTAAGATATTCATCTATGCTGGATGGAGAAACACCAGTAACTACGTCTTCTTCCTCTTCGCTGCCGTCTTCATCTTCACTAGACTCTATATCTTCCCCTTCTAcatcATTTATTCTACGTACATTTATCCAATGACTATGTACTCTCCGTTCTTTGGATACTACTTCCTGAATTTCCTTATGATGGTGCTGCAGTGTCTCCATATCTTCTGGGCCATCCTCATTCTGCGTATGGCCGTCCGCTTCCTGAGCAGCGATGAAAAGGTGGAGGACGAGAGGAGCGATAAAGAAGAGACAGACGAgtcaggggaggaagaggagggggtggagaagaAAGGTGCGGTGCAGAATGGTCACGCCGCTCACAACAACCACCGCAAGACGGAGTAATGAAAACGTGTGCCAGGAAGTAAGAGTGTGAAGAATTCACATCCCTCACTCAGCAGagtaggagagatggagggaaggggaaagggagagatggagggaagggagagatggagggaaggggaagggagagatggag

Function

NR:

description
ceramide synthase 2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24621 CERS2_4, LASS2_4; very-long-chain ceramide synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939874.1 False 1292 mRNA 0.51 11 17685997 17714905
XM_036939855.1 False 1851 mRNA 0.50 11 17685997 17722110
XM_036939861.1 False 2111 mRNA 0.50 12 17685997 17722111
XM_036939866.1 True 2052 mRNA 0.50 12 17685997 17722111

Neighbor

gene id symbol gene type direction distance location
arnt arnt coding downstream 4289 17667882 ~ 17681708 (-)
LOC110536309 LOC106574682 coding downstream 19330 17663193 ~ 17666667 (-)
crabp2a LOC106605806 coding downstream 49229 17624134 ~ 17636768 (-)
itga10 LOC106595728 coding downstream 82325 17532687 ~ 17603672 (-)
rnf115 LOC106591015 coding downstream 162915 17515084 ~ 17523082 (-)
LOC110519442 LOC105018974 coding upstream 11827 17733938 ~ 17808531 (-)
LOC118938160 LOC106574957 coding upstream 87865 17809976 ~ 17919784 (-)
tars2 LOC100380759 coding upstream 209121 17931232 ~ 17947821 (-)
LOC110536358 LOC106605802 coding upstream 230270 17952381 ~ 17966181 (-)
LOC110536367 prpf3 coding upstream 244290 17966401 ~ 17977045 (-)
G118629 NA non-coding downstream 55622 17629604 ~ 17630375 (-)
G118582 polr3c non-coding downstream 153764 17524563 ~ 17532233 (-)
G118578 NA non-coding downstream 180223 17505305 ~ 17505774 (-)
G118575 NA non-coding downstream 183151 17501611 ~ 17502846 (-)
G118572 NA non-coding downstream 187574 17498155 ~ 17498423 (-)
G118660 NA non-coding upstream 3072 17725183 ~ 17725386 (-)
G118662 NA non-coding upstream 5580 17727691 ~ 17727951 (-)
G118663 NA non-coding upstream 6543 17728654 ~ 17729002 (-)
G118637 NA non-coding upstream 13326 17735437 ~ 17737812 (-)
LOC110520799 ash1l other downstream 201746 17455727 ~ 17484284 (-)
G118494 NA other downstream 353969 17331115 ~ 17332028 (-)
G118456 LOC100380853 other downstream 433721 17244124 ~ 17252276 (-)
LOC110534246 LOC106605885 other downstream 590881 17094247 ~ 17121323 (-)
LOC110536375 LOC106575046 other upstream 277362 17999431 ~ 18009077 (-)
LOC110536462 LOC108436080 other upstream 410363 18127347 ~ 18153075 (-)
LOC110534274 LOC105018985 other upstream 440198 18157725 ~ 18188504 (-)
khdc4 LOC106573819 other upstream 546437 18268546 ~ 18277594 (-)

Expression


Co-expression Network