Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110536367 |
| gene name | prpf3 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 17966401 ~ 17977045 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| prpf3 | Acts upstream of or within retina development in camera-type eye. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 18. Orthologous to human PRPF3 (pre-mRNA processing factor 3). |
| description |
|---|
| U4/U6 small nuclear ribonucleoprotein Prp3-like |
| id | description |
|---|---|
| K12843 | PRPF3, PRP3; U4/U6 small nuclear ribonucleoprotein PRP3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036939998.1 | False | 3058 | mRNA | 0.52 | 16 | 17966401 | 17976510 |
| XM_036939990.1 | False | 3208 | mRNA | 0.51 | 17 | 17966401 | 17977043 |
| XM_021622120.2 | True | 3199 | mRNA | 0.52 | 17 | 17966401 | 17977045 |
17,964,000
17,966,000
17,968,000
17,970,000
17,972,000
17,974,000
17,976,000
17,978,000
17,980,000
17,982,000
17,984,000
17,986,000
17,988,000
NC_048566.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110536358 | LOC106605802 | coding | downstream | 220 | 17952381 ~ 17966181 (-) |
| tars2 | LOC100380759 | coding | downstream | 18580 | 17931232 ~ 17947821 (-) |
| LOC118938160 | LOC106574957 | coding | downstream | 46617 | 17809976 ~ 17919784 (-) |
| LOC110519442 | LOC105018974 | coding | downstream | 157870 | 17733938 ~ 17808531 (-) |
| LOC110536315 | LOC105018975 | coding | downstream | 244290 | 17685997 ~ 17722111 (-) |
| LOC110536375 | LOC106575046 | coding | upstream | 22386 | 17999431 ~ 18009077 (-) |
| LOC118936999 | LOC106605786 | coding | upstream | 118579 | 18095624 ~ 18099207 (-) |
| LOC118944060 | LOC105018963 | coding | upstream | 122326 | 18099371 ~ 18102318 (-) |
| LOC110536479 | LOC106605789 | coding | upstream | 143027 | 18120072 ~ 18127143 (-) |
| LOC110536462 | LOC108436080 | coding | upstream | 150302 | 18127347 ~ 18153075 (-) |
| G118751 | NA | non-coding | downstream | 35872 | 17930313 ~ 17930529 (-) |
| G118747 | NA | non-coding | downstream | 41023 | 17925134 ~ 17925378 (-) |
| G118746 | NA | non-coding | downstream | 44111 | 17922074 ~ 17922290 (-) |
| G118741 | NA | non-coding | downstream | 62493 | 17902611 ~ 17903908 (-) |
| G118726 | NA | non-coding | downstream | 93887 | 17871564 ~ 17872514 (-) |
| G118699 | NA | non-coding | upstream | 2197 | 17979242 ~ 17982144 (-) |
| G118760 | NA | non-coding | upstream | 5578 | 17982623 ~ 17983119 (-) |
| G118762 | NA | non-coding | upstream | 7857 | 17984902 ~ 17985117 (-) |
| G118767 | NA | non-coding | upstream | 39719 | 18016764 ~ 18017600 (-) |
| G118779 | NA | non-coding | upstream | 66303 | 18043348 ~ 18044371 (-) |
| G118606 | NA | other | downstream | 256378 | 17682022 ~ 17710023 (-) |
| LOC110536309 | LOC106574682 | other | downstream | 299835 | 17663193 ~ 17666667 (-) |
| LOC110520799 | ash1l | other | downstream | 482150 | 17455727 ~ 17484284 (-) |
| G118494 | NA | other | downstream | 634373 | 17331115 ~ 17332028 (-) |
| LOC110534274 | LOC105018985 | other | upstream | 185264 | 18157725 ~ 18188504 (-) |
| khdc4 | LOC106573819 | other | upstream | 291503 | 18268546 ~ 18277594 (-) |
| G119000 | NA | other | upstream | 450517 | 18427562 ~ 18433668 (-) |
