LOC110536418 (LOC106575022)


Basic Information

Item Value
gene id LOC110536418
gene name LOC106575022
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18016795 ~ 18047915 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940059.1
tctccaaccccctccactccccccaTTCTCTATACTCCACTATTATTTTAATTCTCCCTCTTCACTCACTCTTTCATttttccttccctctttctcctcctctcgctctttctttctctgtctgtctgtctgtctgtctgtctgtctctctctcgctctctctctctgttttttcaCTAAGCTTTTCAGTGACCAACACTGGACTCATGCCCACTCACTTGTCCACCCTTTGcattcttcctttctttctctcttggctctctctctcactcaatcactctttccctctccatctctacttTACTGAGACCTAAACGGCTATTTTGAATGATAGAGGGGACCCAGTGTGTAACGCACACACTCTGAGCTAATTTAGAGAGCTGTAGCAGGTTGGATCAggagcccctgtctctctctctctctatctctctgtctgtccgctCATCTGTGGTTGTGTATGGGAGAGGAGGGCTAACATGGACTTGGtgggtctctctctgcctctattacTTGTGTTTTGGCAATGGACAACTACCACAGGCGCCGCCGTGACGTACTGGACGTACACgggTTCAGTAGGCCAGTCCAAGTGGGCGGATTACTTCCCAGACTGTGGTGGTAAGGCCCAGTCTCCGGTTGACGTGGCAACGGTCCAGACCCAGTATGACCCCAGCCTGGGCCCTCTTACCCCCCTCGGTTATAGCCAGCACGGCAACAAACCCTTCAGCCTCTACAACAACggacatacagTGGTGGTTCCTCTCCCAGGCTGGATGGGTTTAGGGGGGCTGCCCTGGCAGTTCACGGCCGTCCAGATGCACCTACACTGGGGCAATGGAGCCCCGGAGGCAGGGGGCAGCGAACACACCATCAACGGTCAGAGCTCCGCTGCAGAACTGCATGTGGTGCACTACAACTCAGAGCTGTACCCTAACATGTCAGTGGCTATGACCCAGCAGGATGGACTGGCAGTCCTGGGAGTCCTCATAGAGACAGGTGAGGAGGCTAACCAGGCCTTTTGGAACATTCTCAACTACCTGGGTCGCATCAGACATGCAGGTCAGAGTGTGTCCATCCCAGCCTTTGATGTCCAGTCCCTCCTGCCCTCTGACCTGGGGCGGTACTACCGATACAATGGctctctcaccactcctccctgCTTCCAGAGTGTCCTCTGGACCCTCTTCACAGAGACCGTCaaaatctcacacacacagCTGATGAAGCTGGAGACAGTGCTGTATGCCAGTAAGGAGGACGCTGACCGCGTCGTCATGCAGGACAACTACCGTACACCCCAACCACTTAACGACCGGACCATCCTCTCATCCTTCCCAttagAATCAGTGAAGGTGTACACTGCCGgagAGATCGCAGCGATAGTAATAGGAGCTCTGTGTGGCTGTGTTGGTGTGGCTGTCATCATTCGCTTCATAGTGAAGACTATACGgactatggagcCAGGGAAGGAGCTGAAACCGGACGTGGCCCTCAACACGACCACTGAACCAGGAAAAAAAGAAGATCCTGTCCCCCCCTCAGTCTGAGACCAATCAGAGACCTCCATGAACATGTCACACAATTTGTAATTGAAGACTGTATAGTCCAAACAATGTGATTCTGAAATCAGCCCTGCACATTCCTTGCCAGTggaaggactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcttgtcTGAATTCAGCTGTAAATACATTAAGCATCGAAATAAAGGAGTTGAATGAC
>XM_036940051.1
tccaaccccctccactccccccaTTCTCTATACTCCACTATTATTTTAATTCTCCCTCTTCACTCACTCTTTCATttttccttccctctttctcctcctctcgctctttctttctctgtctgtctgtctgtctgtctgtctgtctctctctcgctctctctctctgttttttcaCTAAGCTTTTCAGTGACCAACACTGGACTCATGCCCACTCACTTGTCCACCCTTTGcattcttcctttctttctctcttggctctctctctcactcaatcactctttccctctccatctctacttTACTGAGACCTAAACGGCTATTTTGAATGATAGAGGGGACCCAGTGTGTAACGCACACACTCTGAGCTAATTTAGAGAGCTGTAGCAGGTTGGATCAggagcccctgtctctctctctctctatctctctgtctgtccgctCATCTGTGGTTGTGTATGGGAGAGGAGGGCTAACATGGACTTGGtgggtctctctctgcctctattacTTGTGTTTTGGCAATGGACAACTACCACAGGCGCCGCCGgTTCAGTAGGCCAGTCCAAGTGGGCGGATTACTTCCCAGACTGTGGTGGTAAGGCCCAGTCTCCGGTTGACGTGGCAACGGTCCAGACCCAGTATGACCCCAGCCTGGGCCCTCTTACCCCCCTCGGTTATAGCCAGCACGGCAACAAACCCTTCAGCCTCTACAACAACggacatacagTGGTGGTTCCTCTCCCAGGCTGGATGGGTTTAGGGGGGCTGCCCTGGCAGTTCACGGCCGTCCAGATGCACCTACACTGGGGCAATGGAGCCCCGGAGGCAGGGGGCAGCGAACACACCATCAACGGTCAGAGCTCCGCTGCAGAACTGCATGTGGTGCACTACAACTCAGAGCTGTACCCTAACATGTCAGTGGCTATGACCCAGCAGGATGGACTGGCAGTCCTGGGAGTCCTCATAGAGACAGGTGAGGAGGCTAACCAGGCCTTTTGGAACATTCTCAACTACCTGGGTCGCATCAGACATGCAGGTCAGAGTGTGTCCATCCCAGCCTTTGATGTCCAGTCCCTCCTGCCCTCTGACCTGGGGCGGTACTACCGATACAATGGctctctcaccactcctccctgCTTCCAGAGTGTCCTCTGGACCCTCTTCACAGAGACCGTCaaaatctcacacacacagCTGATGAAGCTGGAGACAGTGCTGTATGCCAGTAAGGAGGACGCTGACCGCGTCGTCATGCAGGACAACTACCGTACACCCCAACCACTTAACGACCGGACCATCCTCTCATCCTTCCCAttagAATCAGTGAAGGTGTACACTGCCGgagAGATCGCAGCGATAGTAATAGGAGCTCTGTGTGGCTGTGTTGGTGTGGCTGTCATCATTCGCTTCATAGTGAAGACTATACGCTCCACCTCTAGCTGGGACGTCCTACCCAGTGTCCGGCCCGCCCCCGTGCCCAGgactatggagcCAGGGAAGGAGCTGAAACCGGACGTGGCCCTCAACACGACCACTGAACCAGGAAAAAAAGAAGATCCTGTCCCCCCCTCAGTCTGAGACCAATCAGAGACCTCCATGAACATGTCACACAATTTGTAATTGAAGACTGTATAGTCCAAACAATGTGATTCTGAAATCAGCCCTGCACATTCCTTGCCAGTggaaggactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcttgtcTGAATTCAGCTGTAAATACATTAAGCATCGAAATAAAGGAGTTGAATGAC
>XM_036940041.1
caaccccctccactccccccaTTCTCTATACTCCACTATTATTTTAATTCTCCCTCTTCACTCACTCTTTCATttttccttccctctttctcctcctctcgctctttctttctctgtctgtctgtctgtctgtctgtctgtctctctctcgctctctctctctgttttttcaCTAAGCTTTTCAGTGACCAACACTGGACTCATGCCCACTCACTTGTCCACCCTTTGcattcttcctttctttctctcttggctctctctctcactcaatcactctttccctctccatctctacttTACTGAGACCTAAACGGCTATTTTGAATGATAGAGGGGACCCAGTGTGTAACGCACACACTCTGAGCTAATTTAGAGAGCTGTAGCAGGTTGGATCAggagcccctgtctctctctctctctatctctctgtctgtccgctCATCTGTGGTTGTGTATGGGAGAGGAGGGCTAACATGGACTTGGtgggtctctctctgcctctattacTTGTGTTTTGGCAATGGACAACTACCACAGGCGCCGCCGTGACGTACTGGACGTACACgggTTCAGTAGGCCAGTCCAAGTGGGCGGATTACTTCCCAGACTGTGGTGGTAAGGCCCAGTCTCCGGTTGACGTGGCAACGGTCCAGACCCAGTATGACCCCAGCCTGGGCCCTCTTACCCCCCTCGGTTATAGCCAGCACGGCAACAAACCCTTCAGCCTCTACAACAACggacatacagTGGTGGTTCCTCTCCCAGGCTGGATGGGTTTAGGGGGGCTGCCCTGGCAGTTCACGGCCGTCCAGATGCACCTACACTGGGGCAATGGAGCCCCGGAGGCAGGGGGCAGCGAACACACCATCAACGGTCAGAGCTCCGCTGCAGAACTGCATGTGGTGCACTACAACTCAGAGCTGTACCCTAACATGTCAGTGGCTATGACCCAGCAGGATGGACTGGCAGTCCTGGGAGTCCTCATAGAGACAGGTGAGGAGGCTAACCAGGCCTTTTGGAACATTCTCAACTACCTGGGTCGCATCAGACATGCAGGTCAGAGTGTGTCCATCCCAGCCTTTGATGTCCAGTCCCTCCTGCCCTCTGACCTGGGGCGGTACTACCGATACAATGGctctctcaccactcctccctgCTTCCAGAGTGTCCTCTGGACCCTCTTCACAGAGACCGTCaaaatctcacacacacagCTGATGAAGCTGGAGACAGTGCTGTATGCCAGTAAGGAGGACGCTGACCGCGTCGTCATGCAGGACAACTACCGTACACCCCAACCACTTAACGACCGGACCATCCTCTCATCCTTCCCAttagAATCAGTGAAGGTGTACACTGCCGgagAGATCGCAGCGATAGTAATAGGAGCTCTGTGTGGCTGTGTTGGTGTGGCTGTCATCATTCGCTTCATAGTGAAGACTATACGCTCCACCTCTAGCTGGGACGTCCTACCCAGTGTCCGGCCCGCCCCCGTGCCCAGgactatggagcCAGGGAAGGAGCTGAAACCGGACGTGGCCCTCAACACGACCACTGAACCAGGAAAAAAAGAAGATCCTGTCCCCCCCTCAGTCTGAGACCAATCAGAGACCTCCATGAACATGTCACACAATTTGTAATTGAAGACTGTATAGTCCAAACAATGTGATTCTGAAATCAGCCCTGCACATTCCTTGCCAGTggaaggactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcttgtcTGAATTCAGCTGTAAATACATTAAGCATCGAAATAAAGGAGTTGAATGAC
>TU135991
actgtagacgTATGATCATTTCCCTGTAGTTCTACTGGTAGACAACACTCATTCCAAAgactacagaacacactgtagacgTATGATCATTTCCCTGAATTCCAACTGAATTATCGACTGCATAAACGAAGTAGCACAGCAGTATTTTTACATGAACCCTCTGTCATGACATCACGATCATGTCAAGCCTGTTATTATGTAGGCCTTCTGACAGACGTACAGGTAATAAGACAATGCTCAAAATAACATATTCCTTTTCTCACTTGCAGAATCAGTGAAGGTGTACACTGCCGgagAGATCGCAGCGATAGTAATAGGAGCTCTGTGTGGCTGTGTTGGTGTGGCTGTCATCATTCGCTTCATAGTGAAGACTATACGCTCCACCTCTAGCTGGGACGTCCTACCCAGTGTCCGGCCCGCCCCCGTGCCCAGgactatggagcCAGGGAAGGAGCTGAAACCGGACGTGGCCCTCAACACGACCACTGAACCAGGAAAAAAAGAAGATCCTGTCCCCCCCTCAGTCTGAGACCAATCAGAGACCTCCATGAACATGTCACACAATTTGTAATTGAAGACTGTATAGTCCAAACAATGTGATTCTGAAATCAGCCCTGCACA

Function

NR:

description
carbonic anhydrase 14-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940059.1 False 1810 mRNA 0.52 11 18016795 18047915
XM_036940051.1 False 1841 mRNA 0.52 11 18016797 18047915
XM_036940041.1 False 1860 mRNA 0.52 12 18016799 18047915
TU135991 True 621 lncRNA 0.37 4 18043863 18047744

Neighbor

gene id symbol gene type direction distance location
polr3c LOC106605790 coding upstream 484558 17523084 ~ 17532237 (+)
gba gba coding upstream 501768 17506575 ~ 17515027 (+)
dap3 LOC106605893 coding upstream 520827 17484825 ~ 17495968 (+)
rusc1 LOC106605889 coding upstream 564309 17426432 ~ 17452486 (+)
fdps LOC106605924 coding upstream 590799 17422056 ~ 17425996 (+)
LOC110536431 LOC107573682 coding downstream 4590 18052505 ~ 18071232 (+)
trim108 LOC106573777 coding downstream 29056 18076971 ~ 18086938 (+)
LOC110536448 NA coding downstream 42393 18090308 ~ 18094143 (+)
LOC110536617 NA coding downstream 229746 18277408 ~ 18278953 (+)
LOC110536604 LOC106574921 coding downstream 256571 18304486 ~ 18343804 (+)
G118109 NA non-coding upstream 11448 18005044 ~ 18005347 (+)
G118108 LOC106575046 non-coding upstream 12293 17999528 ~ 18004502 (+)
G118107 NA non-coding upstream 17680 17998454 ~ 17999115 (+)
G118106 NA non-coding upstream 30457 17986106 ~ 17986338 (+)
G118105 NA non-coding upstream 33593 17982543 ~ 17983202 (+)
G118161 NA non-coding downstream 79741 18127656 ~ 18127977 (+)
G118179 NA non-coding downstream 107360 18155275 ~ 18155514 (+)
G118221 LOC106594169 non-coding downstream 201795 18249710 ~ 18251198 (+)
G118222 NA non-coding downstream 203307 18251222 ~ 18251806 (+)
G117735 NA other upstream 558773 17455765 ~ 17458022 (+)
LOC110520798 fam189b other upstream 595135 17395343 ~ 17421816 (+)
G117714 LOC106605886 other upstream 943094 17073201 ~ 17073701 (+)
G117704 NA other upstream 965956 17050132 ~ 17050839 (+)
LOC110536275 s10i other upstream 1018434 16995630 ~ 16998361 (+)
LOC110536658 LOC106577300 other downstream 409443 18457284 ~ 18481741 (+)
G119153 LOC106605761 other downstream 585924 18633839 ~ 18636041 (+)
G119160 NA other downstream 622598 18670513 ~ 18672320 (+)
G119245 stl2 other downstream 911221 18934673 ~ 18992769 (+)
LOC110503718 LOC102193556 other downstream 1208671 19131905 ~ 19259074 (+)
G118123 NA non-coding upstream 7645 18029843 ~ 18036218 (+)
G118124 NA non-coding upstream 8902 18034386 ~ 18034961 (+)
G118122 NA non-coding upstream 14154 18028616 ~ 18029709 (+)

Expression


Co-expression Network