trim108 (LOC106573777)


Basic Information

Item Value
gene id trim108
gene name LOC106573777
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18076971 ~ 18086938 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940106.1
ACTAGTTAGGCCTAAACAGGTGGCCCCAACATGAACATTTCCAGTCCAGCTAGTTTTACAGGTGCGAGAGAATGTGTTGTGGACGTATGAACTCTGAACAAAGGGAATTGACAGTGAAACTTAAATGTCTTTCTTCACCTGTTGAGCACCGAGGATCAAGACAGTGAACTTTTCAAAGacagaaaaacatttaaataatagTAAAGGTGTACCAGAACTTTAATACAGATATGACATCAGTCCTGTCCGAGCAGCTCCAGTGCccagtctgtttgtgcctttTCACCGACCCGGTGAGTCTACCGTGCGACCACACCTTCTGCCGCCCCTGCATCAGCGCTCACCTGTTGCGGAGCTCAGCGAAGAGCCAGAGCCGCTGCCCAGAGTGCCGCGGCCCTTTCAGCCAGAAGGATCTCCGGGCTCACCGTGTCTTGACCAATATGGCAGATGTGGCCCGAGAGGAGGAGGTGAGTGGCATCGCAGCGAGGGGACCAGAGGCACCGCAGGGACGCACTGTAGCCTCAGAGCTGGTGTGTCCAGAGCATGACGAGAAGTTCAAGTTGTTCTGTGAGACAGACCAGAGGTTGGTGTGTGTGATCtgcagagatggagaaaagcaccGGGGACACACGTTCACACCTGTGAAAGAGGCAGCAAAGATCAGTAAGAACGTTCTGAGGGGAGCTCTGGGGTTCCTGGTGAAAGAGAACCGTGAAATGGAAGGACTGAACCAACAGCAGGCCTCTGAGATCATCAAGACCAAGGAGAAATCTAAAAGCCTGTCGGCTCACATCTCCTCCTGTTTCGAGGAGCTGCACCAGTtcctgaggaggagggaggaggagttgaaggaggagcaggagagggaagagaagaaaaCTGTGGCGGCCATGCTGAAGAATGATTGTGTAATAGAGAACAGGCTGATGATTGGGAGGGAGATGGAAGTAACTTTGCAGTCCGCTCTGGCGATACCTGAGTCTGACTACTTTCTAGAGTGGTGGAGTGAAAGAGGCCTTCCTGTTATTGAGGGGATGAAGATGAAGGACACAGCCAAACCTAAGTCAAGGGTTAGAGGTCTGTTTGTGACCCCTGACTCTCTCAATCTCGGCCTCTACGAGACTCACCTGCCCTTCTGCATGTGGAAGGAGATGCTAAAGGTCATCAAACCAGTTCCAGTGCGCCTCACCCTTAGCAGCAGTGATGATTCCTATTTAAAGGTTTCAGAGGGTGGGGCCAGTGTCAGGCACGCAGACCGGAAGGGCGGCTTCGGCTTCAATTACTACCATGACTACGCCGCCACCACCACTGTCGTCTCCACAGAAACCGTCCAAACAGGGCAGCACTACTGGGAAGTGGAGGTGGGGGGGAAGCTGGACTGGGGGGTGGGGCTAAAGGTGAAGGAAGATTCCGGCAAAGAGTCTGTCCTTTCTCCGGAGAGGGAGATAATGTTGCACCTGAAGCCTGAGAAGGGCCTGGTGTTCAGCCATGATGGTGTGGAGACGCCCCTGATGGCAGCTGCAGGTGACCCAGGTACTCAAGCTGAGGCCCAGGCCAGGCCTCGTAAGGTGGGGCTGTACCTAGACTGTGACAGGGAGAGGGTGTCCTTCTATGATGCAGACAGCATGgttctcctccactcctcatGGTGCAGCTTCATCTCCCCGTGTTCCTTATGCCTCTGCCCCGGGCCGTACATGCAGGGCCGCAACAATAACCCACTGACTGTCTGTTGGTACTGACCCAGCAGGCAAACTGGTTGCAATGACGTCATtatgatatattttctgaagtcATGGTCAGGTTTTGTTCACGTCTTTTAAGTAACCAGAAAAGGATGTATAAAATAGTACTTATTTTCCATGATATCTTCAGGGGTAGACCAGTTGGTAGTTATGTAGTATAGTTATTTGGCATGTTCTAAACCAAAAAATAAATTAGAAAGTTGTAATTTGGATAGAAGCCACATGCCAAATTTGGCTACCTGGGGACCTGGCCCTGGTGTCCACTACCTTTCTTGATTATGTTGAGTATTTCAGAAACTATTTACCAGCTAGAATTATCAAATTATCAATTTTGAGTTCATCCTTTTCTAAaatctttttaaaaatgttttattgttgaCGTTAGGGGCATATTCTGTTAATAACTGCTTTGTGGTGTCCTTTTGTAGTAATCTTACCATGTGTTTGTTGGTGACGGCAGGGTTATGCTTTGTGTAAAACAGCGCCGGCGCTATGGGTTGGCAAAGTCGGGCATGGCCACTCCAGATAGAATTTGTGTCCCCCAAGTTTTGTTTCcccataaaaataaatatataaatctgttgctgtgcccttgagcaaggtaactttacttaactctaattgctctAGGGGTGCTGTACAATGGCGActctggccgtgaccccactccctgcgggtgtctcagggggTGTTGGGATtttcaaaaaacacattttcaataaACACTTGTGTGTAACAAGATAAATATAAGCAACCCCAAATAATTATTAATTACCATGCCCGGTTTTGCCAATGTAGAGCTTCCAGGCCTGCCAGTAGTGCACAATCTCACAATCTAAGGAGGGGGCGGAAGGGGGGATGTAATAACGTAATATTACGttaaaataaaacaatatattCT
>XM_036940097.1
AGTTAGGCCTAAACAGGTGGCCCCAACATGAACATTTCCAGTCCAGCTAGTTTTACAGGTGCGAGAGAATGTGTTGTGGACGTATGAACTCTGAACAAAGGGAATTGACAGTGAAACTTAAATGTCTTTCTTCACCTGTTGAGCACCGAGGATCAAGACAGTGAACTTTTCAAAGacagaaaaacatttaaataatagTAAAGGTGTACCAGAACTTTAATACAGATATGACATCAGTCCTGTCCGAGCAGCTCCAGTGCccagtctgtttgtgcctttTCACCGACCCGGTGAGTCTACCGTGCGACCACACCTTCTGCCGCCCCTGCATCAGCGCTCACCTGTTGCGGAGCTCAGCGAAGAGCCAGAGCCGCTGCCCAGAGTGCCGCGGCCCTTTCAGCCAGAAGGATCTCCGGGCTCACCGTGTCTTGACCAATATGGCAGATGTGGCCCGAGAGGAGGAGGTGAGTGGCATCGCAGCGAGGGGACCAGAGGCACCGCAGGGACGCACTGTAGCCTCAGAGCTGGTGTGTCCAGAGCATGACGAGAAGTTCAAGTTGTTCTGTGAGACAGACCAGAGGTTGGTGTGTGTGATCtgcagagatggagaaaagcaccGGGGACACACGTTCACACCTGTGAAAGAGGCAGCAAAGATCAGTAAGAACGTTCTGAGGGGAGCTCTGGGGTTCCTGGTGAAAGAGAACCGTGAAATGGAAGGACTGAACCAACAGCAGGCCTCTGAGATCATCAAGACCAAGGAGAAATCTAAAAGCCTGTCGGCTCACATCTCCTCCTGTTTCGAGGAGCTGCACCAGTtcctgaggaggagggaggaggagttgaaggaggagcaggagagggaagagaagaaaaCTGTGGCGGCCATGCTGAAGAATGATTGTGTAATAGAGAACAGGCTGATGATTGGGAGGGAGATGGAAGTAACTTTGCAGTCCGCTCTGGCGATACCTGAGTCTGACTACTTTCTAGAGTGGTGGAGTGAAAGAGGCCTTCCTGTTATTGAGGGGATGAAGATGAAGGACACAGCCAAACCTAAttACAGGTCAAGGGTTAGAGGTCTGTTTGTGACCCCTGACTCTCTCAATCTCGGCCTCTACGAGACTCACCTGCCCTTCTGCATGTGGAAGGAGATGCTAAAGGTCATCAAACCAGTTCCAGTGCGCCTCACCCTTAGCAGCAGTGATGATTCCTATTTAAAGGTTTCAGAGGGTGGGGCCAGTGTCAGGCACGCAGACCGGAAGGGCGGCTTCGGCTTCAATTACTACCATGACTACGCCGCCACCACCACTGTCGTCTCCACAGAAACCGTCCAAACAGGGCAGCACTACTGGGAAGTGGAGGTGGGGGGGAAGCTGGACTGGGGGGTGGGGCTAAAGGTGAAGGAAGATTCCGGCAAAGAGTCTGTCCTTTCTCCGGAGAGGGAGATAATGTTGCACCTGAAGCCTGAGAAGGGCCTGGTGTTCAGCCATGATGGTGTGGAGACGCCCCTGATGGCAGCTGCAGGTGACCCAGGTACTCAAGCTGAGGCCCAGGCCAGGCCTCGTAAGGTGGGGCTGTACCTAGACTGTGACAGGGAGAGGGTGTCCTTCTATGATGCAGACAGCATGgttctcctccactcctcatGGTGCAGCTTCATCTCCCCGTGTTCCTTATGCCTCTGCCCCGGGCCGTACATGCAGGGCCGCAACAATAACCCACTGACTGTCTGTTGGTACTGACCCAGCAGGCAAACTGGTTGCAATGACGTCATtatgatatattttctgaagtcATGGTCAGGTTTTGTTCACGTCTTTTAAGTAACCAGAAAAGGATGTATAAAATAGTACTTATTTTCCATGATATCTTCAGGGGTAGACCAGTTGGTAGTTATGTAGTATAGTTATTTGGCATGTTCTAAACCAAAAAATAAATTAGAAAGTTGTAATTTGGATAGAAGCCACATGCCAAATTTGGCTACCTGGGGACCTGGCCCTGGTGTCCACTACCTTTCTTGATTATGTTGAGTATTTCAGAAACTATTTACCAGCTAGAATTATCAAATTATCAATTTTGAGTTCATCCTTTTCTAAaatctttttaaaaatgttttattgttgaCGTTAGGGGCATATTCTGTTAATAACTGCTTTGTGGTGTCCTTTTGTAGTAATCTTACCATGTGTTTGTTGGTGACGGCAGGGTTATGCTTTGTGTAAAACAGCGCCGGCGCTATGGGTTGGCAAAGTCGGGCATGGCCACTCCAGATAGAATTTGTGTCCCCCAAGTTTTGTTTCcccataaaaataaatatataaatctgttgctgtgcccttgagcaaggtaactttacttaactctaattgctctAGGGGTGCTGTACAATGGCGActctggccgtgaccccactccctgcgggtgtctcagggggTGTTGGGATtttcaaaaaacacattttcaataaACACTTGTGTGTAACAAGATAAATATAAGCAACCCCAAATAATTATTAATTACCATGCCCGGTTTTGCCAATGTAGAGCTTCCAGGCCTGCCAGTAGTGCACAATCTCACAATCTAAGGAGGGGGCGGAAGGGGGGATGTAATAACGTAATATTACGttaaaataaaacaatatattCT

Function

NR:

description
nuclear factor 7, brain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940106.1 False 2646 mRNA 0.49 6 18076971 18086938
XM_036940097.1 True 2649 mRNA 0.49 6 18076974 18086938

Neighbor

gene id symbol gene type direction distance location
LOC110536431 LOC107573682 coding upstream 5739 18052505 ~ 18071232 (+)
LOC110536418 LOC106575022 coding upstream 29056 18016795 ~ 18047915 (+)
polr3c LOC106605790 coding upstream 544734 17523084 ~ 17532237 (+)
gba gba coding upstream 561944 17506575 ~ 17515027 (+)
dap3 LOC106605893 coding upstream 581003 17484825 ~ 17495968 (+)
LOC110536448 NA coding downstream 3370 18090308 ~ 18094143 (+)
LOC110536617 NA coding downstream 190723 18277408 ~ 18278953 (+)
LOC110536604 LOC106574921 coding downstream 217548 18304486 ~ 18343804 (+)
LOC110534321 LOC105018956 coding downstream 262813 18349751 ~ 18433698 (+)
si:ch211-120k19.1 LOC106605747 coding downstream 350135 18437073 ~ 18439582 (+)
G118123 NA non-coding upstream 40753 18029843 ~ 18036218 (+)
G118124 NA non-coding upstream 42010 18034386 ~ 18034961 (+)
G118122 NA non-coding upstream 47262 18028616 ~ 18029709 (+)
G118161 NA non-coding downstream 40718 18127656 ~ 18127977 (+)
G118179 NA non-coding downstream 68337 18155275 ~ 18155514 (+)
G118221 LOC106594169 non-coding downstream 162772 18249710 ~ 18251198 (+)
G118222 NA non-coding downstream 164284 18251222 ~ 18251806 (+)
G118223 NA non-coding downstream 167493 18254431 ~ 18255774 (+)
G117735 NA other upstream 618949 17455765 ~ 17458022 (+)
LOC110520798 fam189b other upstream 655311 17395343 ~ 17421816 (+)
G117714 LOC106605886 other upstream 1003270 17073201 ~ 17073701 (+)
G117704 NA other upstream 1026132 17050132 ~ 17050839 (+)
LOC110536275 s10i other upstream 1078610 16995630 ~ 16998361 (+)
LOC110536658 LOC106577300 other downstream 370420 18457284 ~ 18481741 (+)
G119153 LOC106605761 other downstream 546901 18633839 ~ 18636041 (+)
G119160 NA other downstream 583575 18670513 ~ 18672320 (+)
G119245 stl2 other downstream 872198 18934673 ~ 18992769 (+)
LOC110503718 LOC102193556 other downstream 1169648 19131905 ~ 19259074 (+)

Expression


Co-expression Network