LOC110536448


Basic Information

Item Value
gene id LOC110536448
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18090308 ~ 18094143 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622219.2
CTCTTCCTCAGCTTCCTTCTCAGCCTCTCTCTGGAGTCCAATCAGACTCTGTTAAGAGGTCTACCAACACAGACAAGAAGCAGCTCACAGAGCCATAAGGAAACAGTAGAATACATCAAGGAGAATCCCTCTCCAGAGAAGTGCATCAGcctgttccactgtctgaatgagCTGGATGACCATTCTTTAGTGGAGGAGATCCAAAGGCACCTGGGATCGGGAATTCTCTCTAAGGCCAAACGTTCACCTCCAGAGTGGTCAGCTCTGATCTTTGTGTTGCTGACCCCAGAAGAGATGCTGGATATTTTCGACCTGAGAAAATACTCTGGTTCGGAGGAGGGTCTGCTGAGGCTGCTGCCAGTGGTCAAAACCTCCAGAGTAGTGCTACTGATGGGTTACAACCTGACAGAAAAATGCTGTGAAGCACTGGCCTCTTCTCTCAGCTCCTCTCAACTGAGAACGCTGAACCTGAATGATAATGATCTgcaggattcaggagtgaagctgctctctggtGGACTGAGGAGTCCACACTGTAAACTGGAAGTTCTTATTTTGTTATTATATGGgatcacagaggaaggctgtgcttcctTGACCTTGGTTCCGAgttcaaacccctcacacctgagagagctaaATCTGGACTACAGTCACATAGGAGACTCAGGAGTGAAGATTCTCTCTGCTGCACTGGAGCATCCAGACTGTAATGTAAAACTCAGATGCCTATGAGCTgacactggacccaaacacagctCACAGACGCCTCTCCGTCTGAGGGGAACATAACGGAGAcgggagacagaggagaaaccgtatcctgatcacccagaCAGATTTCAATGCTGGTCACAGGTTTTGTCTAGACAGAGGAGCAACCATATCCAGATTAGAGTTGCTGTTATCCAATATATGTATGATATAGGCTACTGCACAGTACGCATGACAGACAAACATAAAAGCccatagatgtagctagctatatgctctctttggtaaataaatgaaactagtgtgaactgtattactgtactgtattatactgtattatatgggCTGGAATTACGCACATTGTTCAAACCACGATAAAGCAGAAGAGAACATGCGGAGCACATGCGGCCTACAAAGTTACAAGTATAGGCTAAAGAATTTGATTtaaattttgaaatataatagggCCTATTTGTATACCTAGTAGGCTGACGCATATATACCTTTCATAATATTCCCCTAATGTTATTAGCCTACTTCCTCTTTCTCtattgttgcttcattccttcATCGCTTTCAACAGTTCAATTAAATACTTTTCGTTGTCCTTATCTTCATCATTCTAATGACATCCATTAATAATATTGGACTAGAATTAGAAACATAAtgctttcacttctcttcacgAAGATTGAATGGTCATGATTCCGAATAAATAACTGATATAGCCTACAGCTATCGCGCCCATTTGCTCTTCTTTCAAACTACCCGTGAGTTCTATTGGCTGTTGTATTTAGCAATCATAAACATATAATGCCCAGCAATGTATTTTAGTCTAGTTTTTCCTGCATGGGATTGGAAGAGCTACGGAACGTTTTTTAAGGAGAGGTCAGCGGAGCACAGGTGTGTGCGTACTGTAAATTAGACTCTTACTATGCACAACCCATTattaattagctaaatataaggctattactgcattgaatgtattacctgaaagaggtaggctaggacaTCTATATATAGGGCTATATATCAATCTAGAACAAGAtgatctattttggatgcaatttgaatggagttGATAGAGAGAACAAGACTGCGAGAGAGTGCTCGCGCGTGCACTGATACAATGCAATGGTGTTTGAGTGATAGGATGTTTTAAAACTACAGCTGCAATTGAAAAAAAGTATAATCTTTCAAATTAAAAAACAAGGTGACCCCCGAAAGCCAGATGGACGGGCATTCGctctttatattactgtagcataggctATGCTGCAACAACTGTACgcctacctgtcacaagaaaacACGTTGACATGATGAAATGATAGTTCGAAATGCATTGTGAACAGCGCTCCATACTGAGATAGGATGTCTGTCCCCACCTTGAGTGTTGATTCATCATACAGACGCCGTAGAGAAGACCGatttagacattgcatatcatttaacagttccatttcacgcgATGCTGTTCATATAAATGATTTATTATAATTTACTGGTTTCTCACAGTTATTTATCCCGGGAAAGGGGAGTGGTTTTGGGGCAGTAAATCTCGGTAACCGGGCTCCAGCCA

Function

NR:

description
protein NLRC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622219.2 True 2299 mRNA 0.42 4 18090308 18094143

Neighbor

gene id symbol gene type direction distance location
trim108 LOC106573777 coding upstream 3370 18076971 ~ 18086938 (+)
LOC110536431 LOC107573682 coding upstream 19076 18052505 ~ 18071232 (+)
LOC110536418 LOC106575022 coding upstream 42393 18016795 ~ 18047915 (+)
polr3c LOC106605790 coding upstream 558071 17523084 ~ 17532237 (+)
gba gba coding upstream 575281 17506575 ~ 17515027 (+)
LOC110536617 NA coding downstream 183518 18277408 ~ 18278953 (+)
LOC110536604 LOC106574921 coding downstream 210343 18304486 ~ 18343804 (+)
LOC110534321 LOC105018956 coding downstream 255608 18349751 ~ 18433698 (+)
si:ch211-120k19.1 LOC106605747 coding downstream 342930 18437073 ~ 18439582 (+)
LOC110536674 rpl18 coding downstream 351937 18446080 ~ 18456914 (+)
G118123 NA non-coding upstream 54090 18029843 ~ 18036218 (+)
G118124 NA non-coding upstream 55347 18034386 ~ 18034961 (+)
G118122 NA non-coding upstream 60599 18028616 ~ 18029709 (+)
G118161 NA non-coding downstream 33513 18127656 ~ 18127977 (+)
G118179 NA non-coding downstream 61132 18155275 ~ 18155514 (+)
G118221 LOC106594169 non-coding downstream 155567 18249710 ~ 18251198 (+)
G118222 NA non-coding downstream 157079 18251222 ~ 18251806 (+)
G118223 NA non-coding downstream 160288 18254431 ~ 18255774 (+)
G117735 NA other upstream 632286 17455765 ~ 17458022 (+)
LOC110520798 fam189b other upstream 668648 17395343 ~ 17421816 (+)
G117714 LOC106605886 other upstream 1016607 17073201 ~ 17073701 (+)
G117704 NA other upstream 1039469 17050132 ~ 17050839 (+)
LOC110536275 s10i other upstream 1091947 16995630 ~ 16998361 (+)
LOC110536658 LOC106577300 other downstream 363215 18457284 ~ 18481741 (+)
G119153 LOC106605761 other downstream 539696 18633839 ~ 18636041 (+)
G119160 NA other downstream 576370 18670513 ~ 18672320 (+)
G119245 stl2 other downstream 864993 18934673 ~ 18992769 (+)
LOC110503718 LOC102193556 other downstream 1162443 19131905 ~ 19259074 (+)

Expression


Co-expression Network