LOC110536617


Basic Information

Item Value
gene id LOC110536617
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18277408 ~ 18278953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475489.2
CGCTAGGGGACGCAGTGAGCAGGCCGCGCCTCACCGGATGATGTAGTCCTGTGGCTGCCTGCTATCATCGTTTTCCTGCCACCCCAGGTGAGTGTTGCGGATATGAACCAGATGAATGTCGGTTCAGGTTTCCCAAATGAAACCCCACAGCACACAGCTTGGTCTACGTGAAAATGTAGGACCAGACATCTTACAAGCAGGATGCTGAGGTGATGATGCCAGAGCCAGTGTTGAGTACACTGGTGGTCTATCCATCATCAGGCTACTGCATGTGTTCACAGAGGTTCTACTGATGCCCACTCTGACCGTGGAGCCTTCAGGACGATAAACAGCGCCACTGGCCACCCCACCACAgctgttattgttttgttgctgAGCTGAGGAGCGTCGGGCAGCATGGTTAAAAAAAGATCTGTACATATTAGTGCTCTTCTATCAGGGAGGGAGTGTTTGTTGTTTGCGCTAACTTCTGTCATTGTAATATCGAAGGACAAGTGGCAAAAAATGTTTGTCAAAGCAGTgtattcctctgtctctccctctttccatgtCTCTGCCCATAAACAGTCCTCCCTTGTCAAGTTGGGTATCAAAGctcccctgacctctgacctattGACACTTAGCTCATCTGAGCCCCATTCCCGAACTTACACTtcaaaataaactcagcaaaaaagaaacgt
>TU136152
CCGCCGTTTTGCGTTCCACCAAATGACATCAATCTTCTATTTGGTTGAATTTCTCTTTGCGTAAAACACTAACGTTTTATACCGCAATACCGACTCCGCCAGACTTACAATATAGCTTGTCCAGACAGTGGAGTACTGCAAGAGCTTTCACTCTATGCGATATCgttcccacttcctgttttttgGGGAAAGGACCGGTGCTGTGTTGAATTTTGCTTCCCTCACACAGATTATTTTCTTCAATCATGTGCGACGCTAGGGGACGCAGTGAGCAGGCCGCGCCTCACCGGATGATGTAGTCCTGTGGCTGCCTGCTATCATCGTTTTCCTGCCACCCCAGGTGAGTGTTGCGGATATGAACCAGATGAATGTCGGTTCAGGTTTCCCAAATGAAACCCCACAGCACACAGCTTGGTCTACGTGAAAATGTAGGACCAGACATCTTACAAGCAGGATGCTGAGGTGATGATGCCAGAGCCAGTGTTGAGTACACTGGTGGTCTATCCATCATCAGGCTACTGCATGTGTTCACAGAGGTTCTACTGATGCCCACTCTGACCGTGGAGCCTTCAGGACGATAAACAGCGCCACTGGCCACCCCACCACAgctgttattgttttgttgctgAGCTGAGGAGCGTCGGGCAGCATGGTTAAAAAAAGATCTGTACATATTAGTGCTCTTCTATCAGGGAGGGAGTGTTTGTTGTTTGCGCTAACTTCTGTCATTGTAATATCGAAGGACAAGTGGCAAAAAATGTTTGTCAAAGCAGTgtattcctctgtctctccctctttccatgtCTCTGCCCATAAACAGTCCTCCCTTGTCAAGTTGGGTATCAAAGctcccctgacctctgacctattGACACTTAGCTCATCTGAGCCCCATTCCCGAACTTACACTtcaaaataaactcagcaaaaaagaaacgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475489.2 False 686 mRNA 0.49 3 18277661 18278953
TU136152 True 939 lncRNA 0.47 3 18277408 18278953

Neighbor

gene id symbol gene type direction distance location
LOC110536448 NA coding upstream 183518 18090308 ~ 18094143 (+)
trim108 LOC106573777 coding upstream 190723 18076971 ~ 18086938 (+)
LOC110536431 LOC107573682 coding upstream 206429 18052505 ~ 18071232 (+)
LOC110536418 LOC106575022 coding upstream 229746 18016795 ~ 18047915 (+)
polr3c LOC106605790 coding upstream 745424 17523084 ~ 17532237 (+)
LOC110536604 LOC106574921 coding downstream 25533 18304486 ~ 18343804 (+)
LOC110534321 LOC105018956 coding downstream 70798 18349751 ~ 18433698 (+)
si:ch211-120k19.1 LOC106605747 coding downstream 158120 18437073 ~ 18439582 (+)
LOC110536674 rpl18 coding downstream 167127 18446080 ~ 18456914 (+)
LOC110536658 LOC106577300 coding downstream 178331 18457284 ~ 18481741 (+)
G118224 NA non-coding upstream 20494 18255837 ~ 18257167 (+)
G118223 NA non-coding upstream 21887 18254431 ~ 18255774 (+)
G118222 NA non-coding upstream 25855 18251222 ~ 18251806 (+)
G118221 LOC106594169 non-coding upstream 26463 18249710 ~ 18251198 (+)
G118179 NA non-coding upstream 122147 18155275 ~ 18155514 (+)
G118240 NA non-coding downstream 3024 18281977 ~ 18282188 (+)
G119026 NA non-coding downstream 203857 18482810 ~ 18483250 (+)
G117735 NA other upstream 819639 17455765 ~ 17458022 (+)
LOC110520798 fam189b other upstream 856001 17395343 ~ 17421816 (+)
G117714 LOC106605886 other upstream 1203960 17073201 ~ 17073701 (+)
G117704 NA other upstream 1226822 17050132 ~ 17050839 (+)
LOC110536275 s10i other upstream 1279300 16995630 ~ 16998361 (+)
G119153 LOC106605761 other downstream 354886 18633839 ~ 18636041 (+)
G119160 NA other downstream 391560 18670513 ~ 18672320 (+)
G119245 stl2 other downstream 680183 18934673 ~ 18992769 (+)
LOC110503718 LOC102193556 other downstream 977633 19131905 ~ 19259074 (+)

Expression


Co-expression Network