LOC110536509 (LOC106593149)


Basic Information

Item Value
gene id LOC110536509
gene name LOC106593149
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18288741 ~ 18292776 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622281.2
CCGAGGGGGCGAGAGCCACActatgaggagggagaggagaggaaacatagCATTGCGAGGCACAAAGTTAGGTGGAACAGCTTTAGATCCATCAACCATCACCTGTCTGACAACGAATAATAAAGATTTGAGGATATCTATTTTTTCTATAGACAAAAACTGGACCAACTATAGGCCTCTGTGGATTTTTGAATGGAAACTGAATCGGACATTCAGACACATTAAATGGAGGAAGATGTTATTTGCAACTACCGGAATTGGATTGAATAAGCCAAGTGGAATCAAAATAATAGTTCCTCTCCCTCTGACATTTATATAAACCCAGCTAACCTCCACACCACCACCATTTCAGAAGTCTCAACTAAAAAGTATGGATTTCTCTagctccctgcctccctcacgTTCTCCATTATACACCTCCCCCTTCATCCCCAACTCCTCCTTCCCCTCCGCCTCTCCAtacatctctccttcccccagcctGGCCTCAACCGCTCTCTTCTgctccctcctgtccctcctggcTCTCCTGGGCATTGGGGGGAACCTCTACACCATGGGTCTCCTCATCAGACgcaggagaggcaggaggaggcgaGGGTGTTCTAGCTGCTGTTTAGGAGGGAGAGGAGTACCGTTAccatcctgcctctcctcctctcccccctccctctccccttcctcctctcccacctcttcttcctccacctccctccatctccaggtGCTGAGTCTAGCTCTGGCGGACCTCCTCTACCTCTTCACGGCTCCCTTCATCGTGTACGACAGCCTGGCAGCTGACTGGGCGTTTGGGGAGCTGGGCTGTCGCCTCCTCTTCAGCCTGGACCTGATCACCCTGCACGCCTCCATCTACACCCTCACCGCCATGAGTCTGGACCGCTATCGGGCTGTGGCCAACCCCCTGGCCACCtcgtcctccccctcctctgggTTGCTCCGTGTGGCCCTGGCCTGGGGCCTGGCGGTGGCCCTCAGCCTGCCCATGATGATCACCCTCCACCTGGAGGACGGAGACGACGGACAGCTGTGTGTCCCTGCCTGGGACGAGCAGAGCTCCAAAGTGTATATGAGCGTGCTGTTCTGTACCAGTATGATAGGGCCGGGGCTGGCCATCGGGGCGCTGTATGCTACTCTGGGCCGTCTCTACTGGGTGTCCCAGACCCAGCCCTGGGccagtggtagtgggggtagcaCGTCCTACCCTCCGCGGGCCCCAAGGCCCAAGGTCCTGCTCCTCATCCTGGGGATAGTTCTGGCCTTCTGGGCCTGTTTCTTGCCCTTCTGGGTGTGGCAGCTGCTGCCGCTATACCGGCCCGACATGCTGCGGACAGTACCGGTGGGTACCCAGGTGACGGTGAACCGGATCCTAACGGGGCTGACGTACGGGAACTCTTGCGTGAACCCATTCTTCTACACGCTGCTCACAGGGGGGAAACGACGGAGGAACAGGCAGACACCGACGTCAGCGAATCAGCTCTGCCGCAAGAGCAGTCCGCAGTAGTGTTCGTGACAGCACAGACAGTCCGGTATAATAGACTGCTCTGGGGGCTGGTGGGGGGCTGCTTACAAACTGTCCGATTCAAACACCCCCGTCTCCCCCTGAAATATCAAAGGGCATTTCACTGTGTAATTGTTACTTCATAAGGACTATATTAAAGACAGCACTTTGTATGCACGGATGTGACTGGACCATACTTCCTATTTGGAGATTAAAAATGTGACGGGCTGAGCGAAAATACCAAAGCTTCAAAACTTGAGAAATATCTCATTGATTGTATGAATTCACAAAAATACATGGAGTATGACAACAGGGAAGCAGCGTTTGTGTGTTCTGTTATCATTTAGGGGGCTTTAGTGAGGACCTCGTGTCACGGACCCTTAACGTTTGATATGCACGCCTAAAGTCAGACCTTTTTTATTAGCAATACCTGCATGTTGGGTTTGGACTTTTATTTTGTAACGAACTCTGCAATGCTTTGCATGGTGACGATGACGCCTGTATTTATATCCAGTTTGGTGTGtataatatgatataatatatCAAATAAAA

Function

NR:

description
urotensin-2 receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622281.2 True 2071 mRNA 0.53 2 18288741 18292776

Neighbor

gene id symbol gene type direction distance location
khdc4 LOC106573819 coding downstream 11147 18268546 ~ 18277594 (-)
LOC110536568 LOC106573533 coding downstream 22955 18256000 ~ 18265786 (-)
LOC118938207 LOC106594169 coding downstream 38059 18249720 ~ 18250682 (-)
LOC110534298 cyp11b coding downstream 39999 18224491 ~ 18248742 (-)
pk LOC106573729 coding downstream 64441 18198290 ~ 18224300 (-)
LOC110536706 LOC106577267 coding upstream 207023 18496988 ~ 18516011 (-)
LOC110536756 ndufa3 coding upstream 248274 18541050 ~ 18543176 (-)
LOC110536762 prpf31 coding upstream 267017 18559793 ~ 18564193 (-)
LOC110536757 lmtk3 coding upstream 271827 18564603 ~ 18586875 (-)
LOC110536773 LOC106577219 coding upstream 294243 18587019 ~ 18590352 (-)
G118892 NA non-coding downstream 162 18288374 ~ 18288579 (-)
G118891 NA non-coding downstream 2175 18286287 ~ 18286566 (-)
G118887 NA non-coding downstream 21284 18266870 ~ 18267457 (-)
G118831 NA non-coding downstream 143755 18144638 ~ 18144986 (-)
G118915 NA non-coding upstream 51432 18344208 ~ 18348747 (-)
G118916 NA non-coding upstream 56254 18349030 ~ 18349250 (-)
G118983 NA non-coding upstream 103839 18396615 ~ 18398422 (-)
G119000 NA non-coding upstream 134916 18427562 ~ 18433668 (-)
G119079 rpl18 non-coding upstream 153376 18446152 ~ 18456914 (-)
LOC110534274 LOC105018985 other downstream 123628 18157725 ~ 18188504 (-)
LOC110536462 LOC108436080 other downstream 135955 18127347 ~ 18153075 (-)
LOC110536375 LOC106575046 other downstream 285445 17999431 ~ 18009077 (-)
LOC118938160 LOC106574957 other downstream 368990 17809976 ~ 17919784 (-)
G119087 LOC106605728 other upstream 183678 18476454 ~ 18476753 (-)
LOC110534340 LOC106605761 other upstream 345105 18627912 ~ 18646884 (-)
G119512 LOC105019016 other upstream 506724 18799500 ~ 18801387 (-)

Expression


Co-expression Network