si:ch211-120k19.1 (LOC106605747)


Basic Information

Item Value
gene id si:ch211-120k19.1
gene name LOC106605747
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18437073 ~ 18439582 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622383.2
ACTATCCTCACCGCATAACTGAATAACGggtagtgcgtgtgtgtgttatttcaaatAGGAAAATCTATAGGCCTCCATCCCAAAGTGTGAGCGGAAATGATTGCCACCATCTTATTCCATGTAATTGGGAGTTTGGGGTGAACTATTCCTTTAAATATATACACTGTGCTTATCATTGTAAATTCAACTTACCACGGGTAACCAAAGGAGGGAAGTGTGGTTTCAGGAGTGGCATCTATTTTTAGTGCAGCCACATGCGTGAGACCAGGGTCTACTCTGCCTTTGAGAAACGGCATGTTGGTATAGATTTGCTGACTTATACTGTGGACCATTACTTTGAACTTTGACCAGCCAAGCAGACCTCTCTGACCTCTGAGAACCTGCCTCTTATTGGCTGAGAATTCCATTGACCCACCCTTCCGTGTCCTCCAGCAGCAAGCACTGTGAATCTTGTGCCTCTGCCACTGCTGTGTTCCAAGCGGTGGATGAGACAGCTAAGTTGTAAGTAACCATGAGTCGAGCCTGGGCCTTGTTTAAGGCCCACCCCTACATCAGCAATGTGGTCGGATACACAACCCTGTTCGCATCCGCGGACCTCATACAGCAAAGCATGCTTGGAGGGAAACAGAGTGGAGGATTAAACACAGACAAGGGAACACACACCATCCATGGCTCAGAGGGGGCCAAGCTTAACATGGAGGGAACCAATATTTCCACTGGTACTAAAAGTGTCACAACATGGGCTGATATTGACTGGTCCCAGACCGCTCGAGTGGCCTTTGTTGGGTTCTGTTTCCATGCCAATTTCAACTACCATTGGCTGAAGGGGCTGGAGAGGATGTTGCCAGGGGGAGGGGCCAAAAAGGTGTCAGGGAAGGTAGTGCTGGATCAACTGGTTGCTGCCCCCGCTACTATCAGTGCCTTCttcatagGTCTTAGTGTATTAGAAAACAAAGAGGACCCATTGGAAAACTGGAGGGAGAAATTCTGGACTTCATACAAGgcattGAATTTCTCCCTGGTTCCCCCAGTTGCTCGTACAGTGTTTGTGGGTGGCATCACGCTGGTGTGGACAGTATTCCTGTGCCATTTCAGACAGCAGAAAGATGATACACAAACCAAACCCCCCTCTCACTGATATGGATGTTATTGGATGAGTTGTGTGATGACAAAATTGTGACAATTATTTAATTGAATAGCTTTTATGTGCTGCACGCTTATAACTTGATTAAAGTAGTTATTTTAAAGAA
>XM_021622377.2
ACCGCATAACTGAATAACGggtagtgcgtgtgtgtgttatttcaaatAGGAAAATCTATAGGCCTCCATCCCAAAGTGTGAGCGGAAATGATTGCCACCATCTTATTCCATGTAATTGGGAGTTTGGGGTGAACTATTCCTTTAAATATATACACTGTGCTTATCATTGTAAATTCAACTTACCACGGGTAACCAAAGGAGGGAAGTGTGGTTTCAGGAGTGGCATCTATTTTTAGTGCAGCCACATGCGTGAGACCAGGGTCTACTCTGCCTTTGAGAAACGGCATGTTGGTATAGATTTGCTGACTTATACTGTGGACCATTACTTTGCAAGCACTGTGAATCTTGTGCCTCTGCCACTGCTGTGTTCCAAGCGGTGGATGAGACAGCTAAGTTGTAAGTAACCATGAGTCGAGCCTGGGCCTTGTTTAAGGCCCACCCCTACATCAGCAATGTGGTCGGATACACAACCCTGTTCGCATCCGCGGACCTCATACAGCAAAGCATGCTTGGAGGGAAACAGAGTGGAGGATTAAACACAGACAAGGGAACACACACCATCCATGGCTCAGAGGGGGCCAAGCTTAACATGGAGGGAACCAATATTTCCACTGGTACTAAAAGTGTCACAACATGGGCTGATATTGACTGGTCCCAGACCGCTCGAGTGGCCTTTGTTGGGTTCTGTTTCCATGCCAATTTCAACTACCATTGGCTGAAGGGGCTGGAGAGGATGTTGCCAGGGGGAGGGGCCAAAAAGGTGTCAGGGAAGGTAGTGCTGGATCAACTGGTTGCTGCCCCCGCTACTATCAGTGCCTTCttcatagGTCTTAGTGTATTAGAAAACAAAGAGGACCCATTGGAAAACTGGAGGGAGAAATTCTGGACTTCATACAAGACTGGAGTGGTGTACTGGTCAACAATGCAGgcattGAATTTCTCCCTGGTTCCCCCAGTTGCTCGTACAGTGTTTGTGGGTGGCATCACGCTGGTGTGGACAGTATTCCTGTGCCATTTCAGACAGCAGAAAGATGATACACAAACCAAACCCCCCTCTCACTGATATGGATGTTATTGGATGAGTTGTGTGATGACAAAATTGTGACAATTATTTAATTGAATAGCTTTTATGTGCTGCACGCTTATAACTTGATTAAAGTAGTTATTTTAAAGAA
>XM_021622371.2
GTGAGCGGAAATGATTGCCACCATCTTATTCCATGTAATTGGGAGTTTGGGGTGAACTATTCCTTTAAATATATACACTGTGCTTATCATTGTAAATTCAACTTACCACGGGTAACCAAAGGAGGGAAGTGTGGTTTCAGGAGTGGCATCTATTTTTAGTGCAGCCACATGCGTGAGACCAGGGTCTACTCTGCCTTTGAGAAACGGCATGTTGGTATAGATTTGCTGACTTATACTGTGGACCATTACTTTGAAGGCTACTAGGTAAAGCCTTATCACACTCCCTCTGACAGAACTTTGACCAGCCAAGCAGACCTCTCTGACCTCTGAGAACCTGCCTCTTATTGGCTGAGAATTCCATTGACCCACCCTTCCGTGTCCTCCAGCAGCAAGCACTGTGAATCTTGTGCCTCTGCCACTGCTGTGTTCCAAGCGGTGGATGAGACAGCTAAGTTGTAAGTAACCATGAGTCGAGCCTGGGCCTTGTTTAAGGCCCACCCCTACATCAGCAATGTGGTCGGATACACAACCCTGTTCGCATCCGCGGACCTCATACAGCAAAGCATGCTTGGAGGGAAACAGAGTGGAGGATTAAACACAGACAAGGGAACACACACCATCCATGGCTCAGAGGGGGCCAAGCTTAACATGGAGGGAACCAATATTTCCACTGGTACTAAAAGTGTCACAACATGGGCTGATATTGACTGGTCCCAGACCGCTCGAGTGGCCTTTGTTGGGTTCTGTTTCCATGCCAATTTCAACTACCATTGGCTGAAGGGGCTGGAGAGGATGTTGCCAGGGGGAGGGGCCAAAAAGGTGTCAGGGAAGGTAGTGCTGGATCAACTGGTTGCTGCCCCCGCTACTATCAGTGCCTTCttcatagGTCTTAGTGTATTAGAAAACAAAGAGGACCCATTGGAAAACTGGAGGGAGAAATTCTGGACTTCATACAAGACTGGAGTGGTGTACTGGTCAACAATGCAGgcattGAATTTCTCCCTGGTTCCCCCAGTTGCTCGTACAGTGTTTGTGGGTGGCATCACGCTGGTGTGGACAGTATTCCTGTGCCATTTCAGACAGCAGAAAGATGATACACAAACCAAACCCCCCTCTCACTGATATGGATGTTATTGGATGAGTTGTGTGATGACAAAATTGTGACAATTATTTAATTGAATAGCTTTTATGTGCTGCACGCTTATAACTTGATTAAAGTAGTTATTTTAAAGAA
>XM_021622368.2
TGAGCGGAAATGATTGCCACCATCTTATTCCATGTAATTGGGAGTTTGGGGTGAACTATTCCTTTAAATATATACACTGTGCTTATCATTGTAAATTCAACTTACCACGGGTAACCAAAGGAGGGAAGTGTGGTTTCAGGAGTGGCATCTATTTTTAGTGCAGCCACATGCGTGAGACCAGGGTCTACTCTGCCTTTGAGAAACGGCATGTTGGTATAGATTTGCTGACTTATACTGTGGACCATTACTTTGAACTTTGACCAGCCAAGCAGACCTCTCTGACCTCTGAGAACCTGCCTCTTATTGGCTGAGAATTCCATTGACCCACCCTTCCGTGTCCTCCAGCAGCAAGCACTGTGAATCTTGTGCCTCTGCCACTGCTGTGTTCCAAGCGGTGGATGAGACAGCTAAGTTGTAAGTAACCATGAGTCGAGCCTGGGCCTTGTTTAAGGCCCACCCCTACATCAGCAATGTGGTCGGATACACAACCCTGTTCGCATCCGCGGACCTCATACAGCAAAGCATGCTTGGAGGGAAACAGAGTGGAGGATTAAACACAGACAAGGGAACACACACCATCCATGGCTCAGAGGGGGCCAAGCTTAACATGGAGGGAACCAATATTTCCACTGGTACTAAAAGTGTCACAACATGGGCTGATATTGACTGGTCCCAGACCGCTCGAGTGGCCTTTGTTGGGTTCTGTTTCCATGCCAATTTCAACTACCATTGGCTGAAGGGGCTGGAGAGGATGTTGCCAGGGGGAGGGGCCAAAAAGGTGTCAGGGAAGGTAGTGCTGGATCAACTGGTTGCTGCCCCCGCTACTATCAGTGCCTTCttcatagGTCTTAGTGTATTAGAAAACAAAGAGGACCCATTGGAAAACTGGAGGGAGAAATTCTGGACTTCATACAAGACTGGAGTGGTGTACTGGTCAACAATGCAGgcattGAATTTCTCCCTGGTTCCCCCAGTTGCTCGTACAGTGTTTGTGGGTGGCATCACGCTGGTGTGGACAGTATTCCTGTGCCATTTCAGACAGCAGAAAGATGATACACAAACCAAACCCCCCTCTCACTGATATGGATGTTATTGGATGAGTTGTGTGATGACAAAATTGTGACAATTATTTAATTGAATAGCTTTTATGTGCTGCACGCTTATAACTTGATTAAAGTAGTTATTTTAAAGAA

Function

NR:

description
mpv17-like protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622383.2 False 1250 mRNA 0.46 5 18437073 18439582
XM_021622377.2 False 1175 mRNA 0.46 6 18437082 18439582
XM_021622371.2 False 1234 mRNA 0.47 6 18437159 18439582
XM_021622368.2 True 1193 mRNA 0.47 6 18437160 18439582

Neighbor

gene id symbol gene type direction distance location
LOC110534321 LOC105018956 coding upstream 3375 18349751 ~ 18433698 (+)
LOC110536604 LOC106574921 coding upstream 93269 18304486 ~ 18343804 (+)
LOC110536617 NA coding upstream 158120 18277408 ~ 18278953 (+)
LOC110536448 NA coding upstream 342930 18090308 ~ 18094143 (+)
trim108 LOC106573777 coding upstream 350135 18076971 ~ 18086938 (+)
LOC110536674 rpl18 coding downstream 6498 18446080 ~ 18456914 (+)
LOC110536658 LOC106577300 coding downstream 17702 18457284 ~ 18481741 (+)
LOC110536690 LOC106577286 coding downstream 45500 18485082 ~ 18493053 (+)
LOC110536732 LOC106577252 coding downstream 84706 18524288 ~ 18538706 (+)
LOC110536755 tfpt coding downstream 102903 18542485 ~ 18545382 (+)
G118240 NA non-coding upstream 154885 18281977 ~ 18282188 (+)
G118224 NA non-coding upstream 179906 18255837 ~ 18257167 (+)
G119026 NA non-coding downstream 43228 18482810 ~ 18483250 (+)
G119053 NA non-coding downstream 99425 18539007 ~ 18539206 (+)
G119054 NA non-coding downstream 100014 18539596 ~ 18540230 (+)
G119016 NA non-coding downstream 101432 18541014 ~ 18561243 (+)
G117735 NA other upstream 979051 17455765 ~ 17458022 (+)
LOC110520798 fam189b other upstream 1015413 17395343 ~ 17421816 (+)
G117714 LOC106605886 other upstream 1363372 17073201 ~ 17073701 (+)
G117704 NA other upstream 1386234 17050132 ~ 17050839 (+)
LOC110536275 s10i other upstream 1438712 16995630 ~ 16998361 (+)
G119153 LOC106605761 other downstream 194257 18633839 ~ 18636041 (+)
G119160 NA other downstream 230931 18670513 ~ 18672320 (+)
G119245 stl2 other downstream 519554 18934673 ~ 18992769 (+)
LOC110503718 LOC102193556 other downstream 817004 19131905 ~ 19259074 (+)

Expression


Co-expression Network