LOC110536674 (rpl18)


Basic Information

Item Value
gene id LOC110536674
gene name rpl18
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18446080 ~ 18456914 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622388.2
CACAGGAAGTAATAGCAAAACAGCCAACGAAAACGCGTGTGACCTCCGCAATCGCGGAGAAGTCTTTATCGCGAGACAGCGACTCTTCCTTTTCCCTTTCCACTCTGAGTCCAAGATGGGAGTTGACATCCGACACAACAAGGACCGTAAGGTGCACAGAAAGGAGCCCAAGAGTCAGGATATCTACCTGAGGCTCCTGGTCAAGCTTTACAGATTCCTGGCCCGTCGCTCCACTGCTCCCTTCAACAAGGTGGTCCTCAGGAGGCTCTTCATGAGCAGGACCCACAGGCCTCCGATATCAGTGTCCCGCATGATCCGTAAGATGAAACTTCCTGGACGTGAGAACAGAACCGCAGTTGTCGTGGGAACTGTCACTGATGATGTCAGAATTCAGGATATCCCCAAGCTCAAGGTGTGCGCTCTGAAGGTGACTGATGGCGCTCGCCGCAGGATCCTGAAGGCCGGAGGCCAGGTCATGACCTTTGACCAGCTGGCTCTGGCTGCCCCCAAAGGACAGGGCACCGTGCTGCTGTCAGGACCCCGCAAGGGCAGAGAGGTGTACAGGCATTTTGGAAAAGCCTGTGGAACCCCCCACAGTCACACCAAgcCCTACATTCGCTCCAAGGGCAGGAAGTTTGAACGTGCTCGTGGGCGCAGATCCAGCCGTGGATACAAGGCCTAAAGTATTTTTTGTTTTCCATGGAATCTGATACAAATAAAAAGAGCAATACAAAATGAA

Function

symbol description
rpl18 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome and rough endoplasmic reticulum. Predicted to be part of cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 18. Orthologous to human RPL18 (ribosomal protein L18).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02883 RP-L18e, RPL18; large subunit ribosomal protein L18e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622388.2 True 739 mRNA 0.53 7 18446080 18456914

Neighbor

gene id symbol gene type direction distance location
si:ch211-120k19.1 LOC106605747 coding upstream 6498 18437073 ~ 18439582 (+)
LOC110534321 LOC105018956 coding upstream 12382 18349751 ~ 18433698 (+)
LOC110536604 LOC106574921 coding upstream 102276 18304486 ~ 18343804 (+)
LOC110536617 NA coding upstream 167127 18277408 ~ 18278953 (+)
LOC110536448 NA coding upstream 351937 18090308 ~ 18094143 (+)
LOC110536658 LOC106577300 coding downstream 370 18457284 ~ 18481741 (+)
LOC110536690 LOC106577286 coding downstream 28168 18485082 ~ 18493053 (+)
LOC110536732 LOC106577252 coding downstream 67374 18524288 ~ 18538706 (+)
LOC110536755 tfpt coding downstream 85571 18542485 ~ 18545382 (+)
LOC110536748 NA coding downstream 88092 18545006 ~ 18556597 (+)
G118240 NA non-coding upstream 163892 18281977 ~ 18282188 (+)
G118224 NA non-coding upstream 188913 18255837 ~ 18257167 (+)
G119026 NA non-coding downstream 25896 18482810 ~ 18483250 (+)
G119053 NA non-coding downstream 82093 18539007 ~ 18539206 (+)
G119054 NA non-coding downstream 82682 18539596 ~ 18540230 (+)
G119016 NA non-coding downstream 84100 18541014 ~ 18561243 (+)
G117735 NA other upstream 988058 17455765 ~ 17458022 (+)
LOC110520798 fam189b other upstream 1024420 17395343 ~ 17421816 (+)
G117714 LOC106605886 other upstream 1372379 17073201 ~ 17073701 (+)
G117704 NA other upstream 1395241 17050132 ~ 17050839 (+)
LOC110536275 s10i other upstream 1447719 16995630 ~ 16998361 (+)
G119153 LOC106605761 other downstream 176925 18633839 ~ 18636041 (+)
G119160 NA other downstream 213599 18670513 ~ 18672320 (+)
G119245 stl2 other downstream 502222 18934673 ~ 18992769 (+)
LOC110503718 LOC102193556 other downstream 799672 19131905 ~ 19259074 (+)

Expression


Co-expression Network