LOC110536690 (LOC106577286)


Basic Information

Item Value
gene id LOC110536690
gene name LOC106577286
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18485082 ~ 18493053 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622389.2
GTCACTTCCTGTACCACCACCTCCTTTGTCTGTGCCCCAGGTTTCGGTACGCAAGGctggttatttatttatttcctttttatttggaggatatattttcatatatatccattACTTTTTCATTTATTGAATGACAGTCGACTCTGAAATATTTATGCCTAAAAGCAAAGCGCCAAAAATGGATGACCTGGACTACAtCCCGGTAGACCTGAGTCCAGAGGAGCGCTCTGAGCTGGAGGACATCCGTCGGAGGAAGGGAGCTCTGCTGCAGGAGATCCAGAGGCTCAGAGACGAGCTCAGAGAGGCCATCATAGAGGTGGAAGGACTGGAGACCAGCACAGAGGGCAGTAAAACTCTACAGAAGAACAGGCATGTGGCCATGGGAAGGAAGAAGTTTAACATGGACCCCAAAAAGggtattgTGTTCCTGGTGGAGAATGAGTTGCTCAGACACACTCAAGAGGATGTTGCCCAGTTCCTGTACAAAGGAGAGGGACTCAACAAGACTGCGATAGGAGACTACCTGGGAGAGAGGGAGGACTTTAATCTCAAGGTTCTGCAGGCGTTTGTTGACCTTCATGAGTTCACTGATCTCAACCTGGTCCAGGCTCTCAGGCAGTTCCTGTGGAGTTTCCGTCTGCCTGGCGAGGCTCAAAAGATTGACAGGATGATGGAGGCCTTTGCACAGAGATACTGTCACTGCAACCCTGGGGTCTTCCAGAGCACTGATACGTGCTATGTGCTGTCGTTTGCTATCATCATGCTGAACACCAGCCTCCACAACCCCAACGTGAGAGACAAGCCTGGATTGGACCGCTTCATCTCCATGAACAGAGGCATCAACGAGGGTGGAGACCTACCAGAGGACCTGCtcagaAATCTTTATGACAGCATCAAGAACGAGCCCTTCAAGATCCCTGAGGATGATGGGAACGACCTGACACACACCTTCTTCAACCCTGACAGAGAGGGCTGGCTCCTCAAACTAGGAGGACGGGTGAAGACCTGGAAAAGAAGATGGTTCATTCTCACAGACAACTGCCTTTACTACTTTGAGTATACTACAGATAAGGAGCCCAGAGGTATCATTCCCCTAGAGAACCTGAGTATCCGGGAGGTTGAAGACCCCAGGAAACCTAACTGCTTTGAGCTGTACATCCCCAACAACCGTGGTCAGCTGATCAAGGCCTGTAAGACGGAGGCAGACGGCAGAGTGGTGGAGGGGAACCACAACGTGTACCGCATCTCTGCCCCCACACCTGAGGAGAAAGACGAATGGATCCACCACATCAActcTGCGGTCAGCGTGGACCCCTTCTATGAGATGCTGGCTGCCAGGAAGAAACGCATATCGTTAAAGAAGAATGAGGAACAACCGTAGAACattcccttcttcctctctcctcttcatcccctcctccacctcttcatcTCTCATTCCAACATGGGACACAAGCCTTTCTTTCCTCCCTAGATTCATTCCATTCCTCACTTTTTTCCCTCTTTCTTTGTGAGGAGGATTTGTTGCTATCCTGTTTAAGAGACTGGCCAGCACAAACAGGCAGTTCAGAAGTGAACTGTGaaataaatatgtattttattCAGGGTAGCAAGCAGGGCAACTGAACCTTCCATCACAAACAGGCTGCAACTCATCAGTCTGAAGTGACTTCCTCTCCATCTGTAACCGATCTAACATTGGGGCAATGGTCCAGTTCTAACCGGTCACTGTGTGAAGGACAGAATGCCCGGCGGCTGAGGAAGCCACTTTAACCTGTTAAGATGCAGCCCTAGTTGTCTGCTGTGCTTTACTCTAACATCTTGGCTCCAGGTTAGCATGTCTATATCAGCATTATCAAAGTGCCACTTTAATACTGTAGCCTCTGTGAAGGAGATGACGCTGGTCCTTACTGCTTAGACCATAAAAATGTCATTCATGTTAAATTTGTTATGATCAACAATCTACGGGAAATGTTCCCAGAAAAACTGACCAATACGGCAACAATTGAGCAGTGAACACTAAAGCCGACGACTCTTGTCAATGACCACTGGCGTTTCCTTCACAAGACTGTTATAAACTCCCTCATACAGACACGTAAACTGTTAACCCCAACTCTATAATACGCTACAGTGGGTTTTAAGAAGTTACAATGGCAGCTTATTACAATGTATACTTCATTTATTTGTAAATACTTGTTAGAATATTGTTTACAACACACATAGATttaatttattgtttatttttgtttgttaCATCTTTTGTTTTGTAAGAGCTACTGTAGAACTGCATGTGGAGATGAGGGTTAATCCTCCATACACACAGATGGACCAGACTCGTGTTAGTGTTGGGTACATTTGAGAAAGATTGTTAGTGTTCCCTGTTGACACAATAGAATCAACCTCCAATTGGAACATTTAGAATATTCAGGACAGGAGagtgatgacatcacaaaacTTTTTGGATAGAAATGTTTAGTATAGAAAAGGCATGGTTCTGTGTGGTATGGAACAAGGAATCCTGTCAGTTCTATACATTCTATTTCTATCTGTACTGTTGATAATGTTGCACTGTCCTGAAGGAACCTCTATTATCCTCTAAGAGCCTGAATGAATGAGGCTCACTGAAGCACAAACAGGTGTCCCAGATGCCTGTAATGGCTTTCTTTCCACCATAACCATCATGGATATATGAAAGGGCTGGTTAGGTGTCCTTCATAATACTGATGCCCATCCAATCCTGTCAGATCTGTGACCTAAAAGAAAAGCAAGCTATGGGTGGTTATTGGGACATCACCCTATGATAAGTCTGAAACGACCTGTCTAATATGAGAACTGAAATCTGAAATGATGGTTCTGAAGTTGAATCATCAGTCAAGCCAGGAAAAGGCATCAGATTCCTCTTAATGTGATTGAATTGAAAAGGACAACAAACATGGAGCACTAATATATCTTTCAATATTATGTAATTGCTGaaatattcaaatgtattgaatGAATAACAATGTTAAGGATACATGTCAAATGATACATTATGCCTGAATTGACTCGTAGATATTTTCATTTGTCATTGGATTAACATTTCATTAGACTGAATATGGAAAATGCAGAATTAGGATTGTCTGCTGCACTTTATCAATATTTAAGCATTATACAGGCTTTAAAGAGCTGTACCTTTTAGATTGGCAATACTAACTATCTGTAGTAGACTCCAGTGGTGGCCCGGCTGTCCTGCATCATCCTCACTGGTTGTGATGAAGGCTTCACAAGTCCATATTTTGATCACTTCCAGCTCTGACAACTATAGAAGTTTTACTCTAAATGTTGTTTACATAGGAAAGTCTAGGTACAAAAAAATGATCTCTTAGTCTTCTCTAGTTATTCTCTGAGTGTGTGGTGTTATAGACACACAGCAGTGAGCCAACCTACAGGCATGGCTGCTGTACACTACACGACACTGAAACACAGACCTGTCTGGGTATTCTTGAAGTGCAAAGTTGCCAAAATGGAGTTGGGACGTCACACTGTTCCAACTCAACAAAGAGACAGACTTTTGTGAGAAAGGACACTAATTAATATTTCTGTCCCCCAGACCCCAACATCACTACTTCTGTCCCccagaccccaccaccactacttctgtcccccagaccccaacatcactacttctgtccccca
>XM_036940418.1
ATTTAGTTACTTTAGTTGAAAACATCGGAGGATTGACAGTAGCTAGAGAGAAGTGTCATTTGGAATGAATACGTTTTTTTACAAATTGTCCTGCATAGTTCACATATGCAGCGCCAAcatCCCGGTAGACCTGAGTCCAGAGGAGCGCTCTGAGCTGGAGGACATCCGTCGGAGGAAGGGAGCTCTGCTGCAGGAGATCCAGAGGCTCAGAGACGAGCTCAGAGAGGCCATCATAGAGGTGGAAGGACTGGAGACCAGCACAGAGGGCAGTAAAACTCTACAGAAGAACAGGCATGTGGCCATGGGAAGGAAGAAGTTTAACATGGACCCCAAAAAGggtattgTGTTCCTGGTGGAGAATGAGTTGCTCAGACACACTCAAGAGGATGTTGCCCAGTTCCTGTACAAAGGAGAGGGACTCAACAAGACTGCGATAGGAGACTACCTGGGAGAGAGGGAGGACTTTAATCTCAAGGTTCTGCAGGCGTTTGTTGACCTTCATGAGTTCACTGATCTCAACCTGGTCCAGGCTCTCAGGCAGTTCCTGTGGAGTTTCCGTCTGCCTGGCGAGGCTCAAAAGATTGACAGGATGATGGAGGCCTTTGCACAGAGATACTGTCACTGCAACCCTGGGGTCTTCCAGAGCACTGATACGTGCTATGTGCTGTCGTTTGCTATCATCATGCTGAACACCAGCCTCCACAACCCCAACGTGAGAGACAAGCCTGGATTGGACCGCTTCATCTCCATGAACAGAGGCATCAACGAGGGTGGAGACCTACCAGAGGACCTGCtcagaAATCTTTATGACAGCATCAAGAACGAGCCCTTCAAGATCCCTGAGGATGATGGGAACGACCTGACACACACCTTCTTCAACCCTGACAGAGAGGGCTGGCTCCTCAAACTAGGAGGAGGACGGGTGAAGACCTGGAAAAGAAGATGGTTCATTCTCACAGACAACTGCCTTTACTACTTTGAGTATACTACAGATAAGGAGCCCAGAGGTATCATTCCCCTAGAGAACCTGAGTATCCGGGAGGTTGAAGACCCCAGGAAACCTAACTGCTTTGAGCTGTACATCCCCAACAACCGTGGTCAGCTGATCAAGGCCTGTAAGACGGAGGCAGACGGCAGAGTGGTGGAGGGGAACCACAACGTGTACCGCATCTCTGCCCCCACACCTGAGGAGAAAGACGAATGGATCCACCACATCAActcTGCGGTCAGCGTGGACCCCTTCTATGAGATGCTGGCTGCCAGGAAGAAACGCATATCGTTAAAGAAGAATGAGGAACAACCGTAGAACattcccttcttcctctctcctcttcatcccctcctccacctcttcatcTCTCATTCCAACATGGGACACAAGCCTTTCTTTCCTCCCTAGATTCATTCCATTCCTCACTTTTTTCCCTCTTTCTTTGTGAGGAGGATTTGTTGCTATCCTGTTTAAGAGACTGGCCAGCACAAACAGGCAGTTCAGAAGTGAACTGTGaaataaatatgtattttattCAGGGTAGCAAGCAGGGCAACTGAACCTTCCATCACAAACAGGCTGCAACTCATCAGTCTGAAGTGACTTCCTCTCCATCTGTAACCGATCTAACATTGGGGCAATGGTCCAGTTCTAACCGGTCACTGTGTGAAGGACAGAATGCCCGGCGGCTGAGGAAGCCACTTTAACCTGTTAAGATGCAGCCCTAGTTGTCTGCTGTGCTTTACTCTAACATCTTGGCTCCAGGTTAGCATGTCTATATCAGCATTATCAAAGTGCCACTTTAATACTGTAGCCTCTGTGAAGGAGATGACGCTGGTCCTTACTGCTTAGACCATAAAAATGTCATTCATGTTAAATTTGTTATGATCAACAATCTACGGGAAATGTTCCCAGAAAAACTGACCAATACGGCAACAATTGAGCAGTGAACACTAAAGCCGACGACTCTTGTCAATGACCACTGGCGTTTCCTTCACAAGACTGTTATAAACTCCCTCATACAGACACGTAAACTGTTAACCCCAACTCTATAATACGCTACAGTGGGTTTTAAGAAGTTACAATGGCAGCTTATTACAATGTATACTTCATTTATTTGTAAATACTTGTTAGAATATTGTTTACAACACACATAGATttaatttattgtttatttttgtttgttaCATCTTTTGTTTTGTAAGAGCTACTGTAGAACTGCATGTGGAGATGAGGGTTAATCCTCCATACACACAGATGGACCAGACTCGTGTTAGTGTTGGGTACATTTGAGAAAGATTGTTAGTGTTCCCTGTTGACACAATAGAATCAACCTCCAATTGGAACATTTAGAATATTCAGGACAGGAGagtgatgacatcacaaaacTTTTTGGATAGAAATGTTTAGTATAGAAAAGGCATGGTTCTGTGTGGTATGGAACAAGGAATCCTGTCAGTTCTATACATTCTATTTCTATCTGTACTGTTGATAATGTTGCACTGTCCTGAAGGAACCTCTATTATCCTCTAAGAGCCTGAATGAATGAGGCTCACTGAAGCACAAACAGGTGTCCCAGATGCCTGTAATGGCTTTCTTTCCACCATAACCATCATGGATATATGAAAGGGCTGGTTAGGTGTCCTTCATAATACTGATGCCCATCCAATCCTGTCAGATCTGTGACCTAAAAGAAAAGCAAGCTATGGGTGGTTATTGGGACATCACCCTATGATAAGTCTGAAACGACCTGTCTAATATGAGAACTGAAATCTGAAATGATGGTTCTGAAGTTGAATCATCAGTCAAGCCAGGAAAAGGCATCAGATTCCTCTTAATGTGATTGAATTGAAAAGGACAACAAACATGGAGCACTAATATATCTTTCAATATTATGTAATTGCTGaaatattcaaatgtattgaatGAATAACAATGTTAAGGATACATGTCAAATGATACATTATGCCTGAATTGACTCGTAGATATTTTCATTTGTCATTGGATTAACATTTCATTAGACTGAATATGGAAAATGCAGAATTAGGATTGTCTGCTGCACTTTATCAATATTTAAGCATTATACAGGCTTTAAAGAGCTGTACCTTTTAGATTGGCAATACTAACTATCTGTAGTAGACTCCAGTGGTGGCCCGGCTGTCCTGCATCATCCTCACTGGTTGTGATGAAGGCTTCACAAGTCCATATTTTGATCACTTCCAGCTCTGACAACTATAGAAGTTTTACTCTAAATGTTGTTTACATAGGAAAGTCTAGGTACAAAAAAATGATCTCTTAGTCTTCTCTAGTTATTCTCTGAGTGTGTGGTGTTATAGACACACAGCAGTGAGCCAACCTACAGGCATGGCTGCTGTACACTACACGACACTGAAACACAGACCTGTCTGGGTATTCTTGAAGTGCAAAGTTGCCAAAATGGAGTTGGGACGTCACACTGTTCCAACTCAACAAAGAGACAGACTTTTGTGAGAAAGGACACTAATTAATATTTCTGTCCCCCAGACCCCAACATCACTACTTCTGTCCCccagaccccaccaccactacttctgtcccccagaccccaacatcactacttctgtccccca

Function

NR:

description
PREDICTED: cytohesin-2 isoform X2

GO: NA

KEGG:

id description
K18441 CYTH; cytohesin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622389.2 False 3675 mRNA 0.44 12 18485082 18493053
XM_036940418.1 True 3600 mRNA 0.44 12 18486070 18493053

Neighbor

gene id symbol gene type direction distance location
LOC110536658 LOC106577300 coding upstream 6310 18457284 ~ 18481741 (+)
LOC110536674 rpl18 coding upstream 28168 18446080 ~ 18456914 (+)
si:ch211-120k19.1 LOC106605747 coding upstream 45500 18437073 ~ 18439582 (+)
LOC110534321 LOC105018956 coding upstream 51384 18349751 ~ 18433698 (+)
LOC110536604 LOC106574921 coding upstream 141278 18304486 ~ 18343804 (+)
LOC110536732 LOC106577252 coding downstream 31235 18524288 ~ 18538706 (+)
LOC110536755 tfpt coding downstream 49432 18542485 ~ 18545382 (+)
LOC110536748 NA coding downstream 51953 18545006 ~ 18556597 (+)
LOC110536807 LOC106577172 coding downstream 113021 18606074 ~ 18621580 (+)
cdc42ep5 LOC106605762 coding downstream 159907 18652960 ~ 18657794 (+)
G119026 NA non-coding upstream 1832 18482810 ~ 18483250 (+)
G118240 NA non-coding upstream 202894 18281977 ~ 18282188 (+)
G119053 NA non-coding downstream 45954 18539007 ~ 18539206 (+)
G119054 NA non-coding downstream 46543 18539596 ~ 18540230 (+)
G119016 NA non-coding downstream 47961 18541014 ~ 18561243 (+)
G119064 NA non-coding downstream 84256 18577309 ~ 18577580 (+)
G119065 NA non-coding downstream 85667 18578720 ~ 18579099 (+)
G117735 NA other upstream 1027060 17455765 ~ 17458022 (+)
LOC110520798 fam189b other upstream 1063422 17395343 ~ 17421816 (+)
G117714 LOC106605886 other upstream 1411381 17073201 ~ 17073701 (+)
G117704 NA other upstream 1434243 17050132 ~ 17050839 (+)
G119153 LOC106605761 other downstream 140786 18633839 ~ 18636041 (+)
G119160 NA other downstream 177460 18670513 ~ 18672320 (+)
G119245 stl2 other downstream 466083 18934673 ~ 18992769 (+)
LOC110503718 LOC102193556 other downstream 763533 19131905 ~ 19259074 (+)
G119794 u2af2 other downstream 1013598 19506651 ~ 19507338 (+)

Expression


Co-expression Network