LOC110536755 (tfpt)


Basic Information

Item Value
gene id LOC110536755
gene name tfpt
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18542485 ~ 18545382 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622420.2
TGTAGTATTGCCGGGCTGGGGAACATGGGAACTGTAGTCTACATAATGTCGTATAATTATTGCGCCAGTTGCAACAACACAAAAAGGTTGTTTGACAGCGTGAAACCTGCGGTGATGCTTTGACCGCTGCGGTCAATGGATCGGATGATGGAGGATTTCTCCGGCCTGGCCCTGCCGCCTCTCTTTGGGGGCCACATCCTGGAAGCAGAGCTGGAGCCAGGTGGGGTGGAACTGGGCCCAGGGGAGGTAGAGCTTGGCCCTGGGGTCAGTGAGTTGCTAGAGGGCAGAGGTCAAGGGTCAGGAGCAAGGCcagagcagcagcaggaggagatgagagaattGGAGAAGAGGAAGTACCTGGCTTTGATCAAGAGGTGTAAGGAGATCGAACAGGTGAATGAGAAGATCCTTGGTCGCCTTCACCAGGTACAAAGACTAACACGTCGcatgaagaaagagagaagGTTCCTAATGAAGACCCTCGATGCCCATGGAGATGACTATAGAAATGCACAGCTCACCATATCGCTTGAGGAAGAGTCTGGTGCCCATTTAGACATCGGCCCTGGAGTAGAAGATGATGGGCTGAATGACCTTCCTAgctcctccccctctgtcccttTCCAATCCACAGTGGGATCCAAGAAGAAGAGGCATCGAGTTCCAAAACAGGAGAAAGACCCACAGACTGAAGCAGACCTCTCCATGTTGGCAGAGACGCAGTTCAGTGACTTTCCCAGCCCAACCGCTTTGTCTCACTGACCAGGGGAATGGCCGGCTGCTAGTGGGAGGAGAAATGAAGCAGCATTCTGTTGCTTGGCCTCCCACTTCCCCAGACGTGATGTCACTGAAACACATACAGCCAGGGCTGTAATGAAAAACAAGGTGGATAAGATTATAATTTATGCACAACTATGGTCTGGAAATGGCTGAAGGTCTTGACCATGGTAATCCACCCACCCATTCTGCTCGAGTAGAGAATGCATGGTCCGGTCCTTGTGGAAGTTACATTGACAGTACATGTATTGATGTGAACCTTTTATCAGGATACTCTGAACATGTTTTATGATTGTTTGTCGACGTGACGCTTACTAAATGTTCCGTATAAAATGTTTATTCAGAA

Function

symbol description
tfpt Predicted to act upstream of or within apoptotic process. Orthologous to human TFPT (TCF3 fusion partner).

NR:

description
TCF3 fusion partner homolog isoform X1

GO: NA

KEGG:

id description
K11670 TEPT, INO80F; TCF3 fusion partner

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622420.2 True 1123 mRNA 0.50 7 18542485 18545382

Neighbor

gene id symbol gene type direction distance location
LOC110536732 LOC106577252 coding upstream 3779 18524288 ~ 18538706 (+)
LOC110536690 LOC106577286 coding upstream 49432 18485082 ~ 18493053 (+)
LOC110536658 LOC106577300 coding upstream 63713 18457284 ~ 18481741 (+)
LOC110536674 rpl18 coding upstream 85571 18446080 ~ 18456914 (+)
si:ch211-120k19.1 LOC106605747 coding upstream 102903 18437073 ~ 18439582 (+)
LOC110536807 LOC106577172 coding downstream 60692 18606074 ~ 18621580 (+)
cdc42ep5 LOC106605762 coding downstream 107578 18652960 ~ 18657794 (+)
leng9 LOC106605766 coding downstream 162253 18707635 ~ 18720399 (+)
ttyh1 LOC106592928 coding downstream 176033 18721415 ~ 18755200 (+)
ube2s ube2s coding downstream 215461 18760843 ~ 18767906 (+)
G119054 NA non-coding upstream 2255 18539596 ~ 18540230 (+)
G119053 NA non-coding upstream 3279 18539007 ~ 18539206 (+)
G119026 NA non-coding upstream 59235 18482810 ~ 18483250 (+)
LOC110534321 LOC105018956 non-coding upstream 108787 18349751 ~ 18433698 (+)
G119064 NA non-coding downstream 31927 18577309 ~ 18577580 (+)
G119065 NA non-coding downstream 33338 18578720 ~ 18579099 (+)
G119066 NA non-coding downstream 34822 18580204 ~ 18580412 (+)
G119071 NA non-coding downstream 40494 18585876 ~ 18586079 (+)
G119076 NA non-coding downstream 47129 18592511 ~ 18592815 (+)
G117735 NA other upstream 1084463 17455765 ~ 17458022 (+)
LOC110520798 fam189b other upstream 1120825 17395343 ~ 17421816 (+)
G117714 LOC106605886 other upstream 1468784 17073201 ~ 17073701 (+)
G117704 NA other upstream 1491646 17050132 ~ 17050839 (+)
G119153 LOC106605761 other downstream 88457 18633839 ~ 18636041 (+)
G119160 NA other downstream 125131 18670513 ~ 18672320 (+)
G119245 stl2 other downstream 413754 18934673 ~ 18992769 (+)
LOC110503718 LOC102193556 other downstream 711204 19131905 ~ 19259074 (+)
G119794 u2af2 other downstream 961269 19506651 ~ 19507338 (+)

Expression


Co-expression Network