grwd1 (grwd1)


Basic Information

Item Value
gene id grwd1
gene name grwd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18662604 ~ 18672410 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622578.2
GGGGCTCATCAGCTGAATTATCGCAaatgagcgagcgagagacaaaCCACGTGATCAATCCACCGGAAGTAAGCAAAGCCTGGCCCCTCTCAAAATGTCGGCGCCCGGAGAAGACACGCTTCCGAACgaagatggagagatagaagaAATGGAAGGGGGTGGCAGCGACGAAGACGAAATGGAAGAAGAGGGAAAGGATGGAGAACAGGAAACTCAAGTTTATGTCCCCGGAAAACAGCCTCTCCAACCCGGAGAGGAGCTCGAGATGGACCGGTCGGCTTACCGCATGTACCACGAGTGTCAGACAGGTGCTCCTTGCCTGAGCTTCGACGTGTTGAGAGATGCGAATGGAGACGGCAGGGAACAGTATCCCCTCTCTATGCTGCTCTGTGCAGGCACACAGGCTGACGCTGCCCTCAGCAACAGACTGCTTCTCATACGCATGCACAACCTCCACGGTACTACAGAGAAAGTGAAGGAGGGGGACGAGAGCAGTGATGGAGAGAGTGAtgaagaggatgatgatgaagataaGAAGCCACAGATGGAGTTGGCCATGATGCCTCACTACGGAGGGATCAACAGAGTCCGAGTGACCCATCGTGGAGATCAGTCATTGGCTGCTGTCTGGTCAGAGAAAGGTCAGGTGGAGATATTTGACCTCCGATCCCAGGTGGAAGCCGTCCACAGTTCAGCTGCCATGTCAACCTTTGTTAAACAGCAGAAGGAAGCCACGCCCCTCTTCAGTTTCTCGGGTCACATGAGTGAGGGCTTTGCCATTGATTGGTCGCCCAAAGTACCCGGTCGGCTGGTCAGTGGCGACTGCAAAAATAACATCCATGTGTGGGAACCACAGGAGGGAGGGACCTCCTGGCAGATCGACCAACGGCCTTTCAGTTCTCACACCAAGTCCGTGGAGGACCTGCAGTGGTCACCCACAGAAGCCACGGTTTTTGCGTCCTGCTCTGTGGATCAGTCCATCCGGGTCTGGGACACCAGAGCCCCGCCCAACTCCATGCTCTGTGCCAAGGAGGCACACTCCTCAGACGTCAACGTCATCAGTTGGAACAGGACTGAACCATTCCTCCTGTCTGGCGGGGATGACGGACTTCTGAAAGTTTGGGACTTGAGGCAGTTCCAGTCGGGCCGGCCGGTGGCTAACTTCAAGCAGCACAGCGCGCCAGTGACATCAGTAGAATGGAACCCTGTGGACTCCAGCGTGTTCGCCGCCTCTGGAGCGGACGACGTGGTCAGCCAATGGGACCTATCGGTAGAGTCAAGTGATGTTGGTGCGAGGGCGGAGGGGGTGAAGGACCTGCCCCCCCAGCTGCTGTTCCTGCACCAGGGTCAGACAGAGGTCAAGGAAATCCACTGGCACCCGCAGATACCTGGAGTGATGGTCTCTACTGCTCTGTCAGGCTTCAATGTGTTCAGGACCATCTCtgtatagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagggtctaagtgtgtgtgcctgtgtttttTACTTCTCAGTCCCCTCACTGCTCTGTTGGCATGCATTTACCATGTACTGTGCATGTATGTTATTCCTTCTGGCCTTCACAAGTAGCATGTGTACCAACATGTTCAAAATAAAACACTTTACCAAA
>XM_036940626.1
GGGGCTCATCAGCTGAATTATCGCAaatgagcgagcgagagacaaaCCACGTGATCAATCCACCGGAAGTAAGCAAAGCCTGGCCCCTCTCAAAATGTCGGCGCCCGGAGAAGACACGCTTCCGAACgaagatggagagatagaagaAATGGAAGGGGGTGGCAGCGACGAAGACGAAATGGAAGAAGAGGGAAAGGATGGAGAACAGGAAACTCAAGTTTATGTCCCCGGAAAACAGCCTCTCCAACCCGGAGAGGAGCTCGAGATGGACCGGTCGGCTTACCGCATGTACCACGAGTGTCAGACAGGTGCTCCTTGCCTGAGCTTCGACGTGTTGAGAGATGCGAATGGAGACGGCAGGGAACAGTATCCCCTCTCTATGCTGCTCTGTGCAGGCACACAGGCTGACGCTGCCCTCAGCAACAGACTGCTTCTCATACGCATGCACAACCTCCACGGTACTACAGAGAAAGTGAAGGAGGGGGACGAGAGCAGTGATGGAGAGAGTGAtgaagaggatgatgatgaagataaGAAGCCACAGATGGAGTTGGCCATGATGCCTCACTACGGAGGGATCAACAGAGTCCGAGTGACCCATCGTGGAGATCAGTCATTGGCTGCTGTCTGGTCAGAGAAAGGTCAGGTGGAGATATTTGACCTCCGATCCCAGGTGGAAGCCGTCCACAGTTCAGCTGCCATGTCAACCTTTGTTAAACAGCAGAAGGAAGCCACGCCCCTCTTCAGTTTCTCGGGTCACATGAGTGAGGGCTTTGCCATTGATTGGTCGCCCAAAGTACCCGGTCGGCTGGTCAGTGGCGACTGCAAAAATAACATCCATGTGTGGGAACCACAGGAGGGAGGGACCTCCTGGCAGATCGACCAACGGCCTTTCAGTTCTCACACCAAGTCCGTGGAGGACCTGCAGTGGTCACCCACAGAAGCCACGGTTTTTGCGTCCTGCTCTGTGGATCAGTCCATCCGGGTCTGGGACACCAGAGCCCCGCCCAACTCCATGCTCTGTGCCAAGGAGGCACACTCCTCAGACGTCAACGTCATCAGTTGGAACAGGACTGAACCATTCCTCCTGTCTGGCGGGGATGACGGACTTCTGAAAGTTTGGGACTTGAGGCAGTTCCAGTCGGGCCGGCCGGTGGCTAACTTCAAGCAGCACAGCGCGCCAGTGACATCAGTAGAATGGAACCCTGTGGACTCCAGCGTGTTCGCCGCCTCTGGAGCGGACGACGTGGTCAGCCAATGGGACCTATCGGTAGAGTCAAGTGATGTTGGTGCGAGGGCGGAGGGGGTGAAGGACCTGCCCCCCCAGCTGCTGTTCCTGCACCAGGGTCAGACAGAGGTCAAGGAAATCCACTGGCACCCGCAGATACCTGGAGTGATGGTCTCTACTGCTCTGTCAGGCTTCAATGTGTTCAGGACCATCTCtgtatagttgtgtgtgtgtgtgtgtgtgtgagggtctaagtgtgtgtgcctgtgtttttTACTTCTCAGTCCCCTCACTGCTCTGTTGGCATGCATTTACCATGTACTGTGCATGTATGTTATTCCTTCTGGCCTTCACAAGTAGCATGTGTACCAACATGTTCAAAATAAAACACTTTACCAAA

Function

symbol description
grwd1 Predicted to be located in nucleus. Is expressed in several structures, including alar plate midbrain region; digestive system; midbrain; pectoral fin bud; and segmental plate. Orthologous to human GRWD1 (glutamate rich WD repeat containing 1).

NR:

description
PREDICTED: glutamate-rich WD repeat-containing protein 1

GO: NA

KEGG:

id description
K14848 RRB1, GRWD1; ribosome assembly protein RRB1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622578.2 False 1658 mRNA 0.54 7 18662604 18672410
XM_036940626.1 True 1628 mRNA 0.54 8 18662604 18672410

Neighbor

gene id symbol gene type direction distance location
LOC110534340 LOC106605761 coding downstream 15720 18627912 ~ 18646884 (-)
LOC110536796 rps9 coding downstream 56963 18603045 ~ 18605641 (-)
LOC110536773 LOC106577219 coding downstream 72252 18587019 ~ 18590352 (-)
LOC110536757 lmtk3 coding downstream 75729 18564603 ~ 18586875 (-)
LOC110536762 prpf31 coding downstream 98411 18559793 ~ 18564193 (-)
LOC110536908 LOC106605765 coding upstream 16538 18688948 ~ 18693820 (-)
LOC110536927 LOC106577129 coding upstream 23423 18695833 ~ 18708631 (-)
josd2 josd2 coding upstream 82881 18755291 ~ 18757796 (-)
LOC110508916 LOC106605783 coding upstream 389684 19062094 ~ 19077953 (-)
cacng6b LOC106606119 coding upstream 811918 19484328 ~ 19499142 (-)
G119458 NA non-coding downstream 34904 18626958 ~ 18627700 (-)
G119448 NA non-coding downstream 59919 18602471 ~ 18602685 (-)
G119447 NA non-coding downstream 60255 18601933 ~ 18602349 (-)
G119148 NA non-coding downstream 62111 18600195 ~ 18600493 (-)
G119499 NA non-coding upstream 12256 18684666 ~ 18684901 (-)
G119532 ube2s non-coding upstream 93174 18765584 ~ 18767871 (-)
G119536 NA non-coding upstream 96368 18768778 ~ 18769085 (-)
G119522 NA non-coding upstream 125608 18798018 ~ 18798306 (-)
LOC110536756 ndufa3 other downstream 120107 18541050 ~ 18543176 (-)
G119087 LOC106605728 other downstream 185851 18476454 ~ 18476753 (-)
G119000 NA other downstream 228936 18427562 ~ 18433668 (-)
khdc4 LOC106573819 other downstream 390497 18268546 ~ 18277594 (-)
G119512 LOC105019016 other upstream 127090 18799500 ~ 18801387 (-)
G119663 NA other upstream 375897 19048307 ~ 19049030 (-)
LOC118944062 LOC106575151 other upstream 1021279 19692971 ~ 19695564 (-)
LOC110537275 grl1 other upstream 1251688 19924063 ~ 19928533 (-)

Expression


Co-expression Network