LOC110536908 (LOC106605765)


Basic Information

Item Value
gene id LOC110536908
gene name LOC106605765
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18688948 ~ 18693820 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622588.1
ACTTTCACTTTCAGGCTAGCCTCTGCCTGAgctcacacagacagactgcccagagggcgagagagagatagtgggtctgtttctctcactctgtccaTTAGCCATTTAAAGGGTGAGAAGAGAGTGAGGTCTGTAATATACTGGGtcaacaggggagagagagagagactgacagacagacagacagagagggagggggagaaagaaagggaaaggCTGCAGTTTGACAAACTGGGAGGTGGGAAAATCCAAAGTGAGAGCACAGTGCAGATTGAATgagagaagggggtgtggagATTTGGAAAGTACCAGGGAGACAAAAGGAGGAATTCTAAAAAAGAGGTCGACTAAGCTGGAGTCTCAACAGTAGAGGAAAAAGAAAAGACACACACTTGACGGAACCGCTGAGGAAACTTTGCCTAGTCAGACCagaggatttatttcagctgcgTATTGCATGCTTTCAAACACAGAAATGGAGAAGTGGCCTTTCTCATGAAGATAAAAGGATGTTACGATCAGTTTTTCTGTTGCTATCAATATTGACACTCCAAGGTAGCGGATGTGATTACTTTTTGAGGGGGGTTGTCGATAATCTTCAAACCACCCTTAACTCAGACCACGCTGGATTTCGTAAGGTGTTCCCTAAAGACTATAGGATTTCCCACCACTACAATGTCAACCTGCTGTGCAACACTGATCCGTGTTGTGTGTTCCGAGCTGCGACTGTTCTCTCTGACTCCTGGCTCCAGCTCCGCAGCCAGCTGTGGCCAGAGCACCATAGCTTCGAATTCATCTCCAACCTTATACAAGCCCTGGGTGACAGGGGTATGACAAAATGGAGATTTGAGGATCCTGACCCTTCAgttcttccctctgtctcctcctctccagagaAACTTCTCAACTTCACTTCATCTGTTTTCTCCAAATGGCTGGAGCTGGGGTGCTCGACCCCGGTGGACACTTGTCCTTTCCCCACTCTGGCCTCTCCTACTGGGGAGGAAGAAAGGGCAGCTCTGGAAAGTAAAAAAGTGAGGTTATTAACCACACGAGCAGTTCACATGGAGAATGAAGGGGAAATAGGGATGAGGTTACACACACCTCCACCAACCAATAGGAGCCCACCATCCAAAGGTGGGCTCCTATTAGTTCTTTCTGggtctttttttttaaacctttatttaactaggcaagtcaattaagaacaaattcttacttacaatgacggcctacattgGAGCCTCCTGTTATGTGGACTGCCTGGATGCTACTGTAGAGCTGTTGCTAAAGTTACTGAAGTGGATCTCTAATGGCGCACACAAAATGGTTtggagcacttgttggcttttTCTTCTCAATCTGTCCATTCTAGCTGTTCTAATACAGTAAGCTTTGTCAATCAAGTGACTGACATGCACACTTAATTGTTGCACTGAATGTACAACTGCAGTCAAGATTATGTATAGAATAACAACCTTTTAATTTACTGTCTGCACACCAGAGTTCTATTATCGCCATAAGAAACTATTACGTTATACAACATAGCCATATGTATAAAAAGCCATATTCTATGAAAGCTAACTAAACACTAACAAGTGTTTTATATTGAGCAAGATACAGAACATAAATTATTGTCCAATATTTCTGATCAAATTCATATGATGTTTACAATGCAGTGGAATTTgaatatttgtttatttgttggTCTTCAATGAATGTTGTTTTTTTCTATGAACTTTTGTACATACTGCATCTTGTAAATAAAAACCATGCAGCCGTTA

Function

NR:

description
uncharacterized protein LOC110536908

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622588.1 True 1784 mRNA 0.43 5 18688948 18693820
Loading

Neighbor

gene id symbol gene type direction distance location
grwd1 grwd1 coding downstream 16538 18662604 ~ 18672410 (-)
LOC110534340 LOC106605761 coding downstream 42064 18627912 ~ 18646884 (-)
LOC110536796 rps9 coding downstream 83307 18603045 ~ 18605641 (-)
LOC110536773 LOC106577219 coding downstream 98596 18587019 ~ 18590352 (-)
LOC110536757 lmtk3 coding downstream 102073 18564603 ~ 18586875 (-)
LOC110536927 LOC106577129 coding upstream 2013 18695833 ~ 18708631 (-)
josd2 josd2 coding upstream 61471 18755291 ~ 18757796 (-)
LOC110508916 LOC106605783 coding upstream 368274 19062094 ~ 19077953 (-)
cacng6b LOC106606119 coding upstream 790508 19484328 ~ 19499142 (-)
u2af2a u2af2 coding upstream 812848 19506668 ~ 19513981 (-)
G119499 NA non-coding downstream 4047 18684666 ~ 18684901 (-)
G119458 NA non-coding downstream 61248 18626958 ~ 18627700 (-)
G119448 NA non-coding downstream 86263 18602471 ~ 18602685 (-)
G119447 NA non-coding downstream 86599 18601933 ~ 18602349 (-)
G119532 ube2s non-coding upstream 71764 18765584 ~ 18767871 (-)
G119536 NA non-coding upstream 74958 18768778 ~ 18769085 (-)
G119522 NA non-coding upstream 104198 18798018 ~ 18798306 (-)
G119541 NA non-coding upstream 122220 18816040 ~ 18818685 (-)
LOC110536756 ndufa3 other downstream 146451 18541050 ~ 18543176 (-)
G119087 LOC106605728 other downstream 212195 18476454 ~ 18476753 (-)
G119000 NA other downstream 255280 18427562 ~ 18433668 (-)
khdc4 LOC106573819 other downstream 416841 18268546 ~ 18277594 (-)
G119512 LOC105019016 other upstream 105680 18799500 ~ 18801387 (-)
G119663 NA other upstream 354487 19048307 ~ 19049030 (-)
LOC118944062 LOC106575151 other upstream 999869 19692971 ~ 19695564 (-)
LOC110537275 grl1 other upstream 1230278 19924063 ~ 19928533 (-)

Expression

LOC110536908(LOC106605765) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110536908(LOC106605765) Expression in each Bioproject

Bar chart with 21 bars.
LOC110536908(LOC106605765) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network