LOC110536927 (LOC106577129)


Basic Information

Item Value
gene id LOC110536927
gene name LOC106577129
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18695833 ~ 18708631 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940648.1
gcgaggctctttgaaaggagggagtagtgtaacgaccctgggtttataagcgggGAAATCGAtcctgccgcacgagcatgcttttgcagCGCAGTCGATAGCGCGTTGGACCTCGGGCTAGAAGGctgagggttcgagacctgctccctgctgtttcattacaacaTCAATGTTTACACTGAATCCAAAGACAAAGCATTGACAATAACGCACCTCTGATCACCAGTCATCTCTCCCAGGCCAGGTGTGTCCAGGTCGTGAGGGTCCTATCTTCTTTGGGGATGAGCAGCATGGTTTTGTGTTCTCTCACACGTTCTTCATCAAGGACAGCCTGGCCCGGGGCTTTCAGCGGTGGTACAGTATCGTCATGGTAGCCATGGACAGGATCTACCTCATCAACTCCTGGCCCTTCCTGCTGCGCCACCTCAGACTCACTATACAGAGTCTACAGAGCACAGCACTGaagGTGTTTGAcagtgagcagtgtgtgtgtcctcagagGGCGGTGAGGATGAACAGTGTGttctctcctgctgtcttccCCCACCAGAGGAGTGGTAACGCGGCCCGCTCCCTGCCCTCCCTCACCCAGCACACCAAACTCTGGGCCAGCCTACACTCCTCCTTCAGCTGGTTACTGAAGGCCTGTGGTAGTCGTCTGACAGAGAAGCTGCTGGAGGGAGCTCCCACAGAGGACACACTGGTTCTTGTAGAGAGACAGACCGAGCAAGAGGAGGAAATGAGTTGCTGGGAAGGAGCAGAAGGGGGCGGGTCTAGACCCCAGTACCACCAATCGGAAAGCGAGCTGTACAGAGACTTCTTGTTTGACGAGGGGAAAGCAGAGGGGTATCCTGGTCCAAAGTTCAGGTCCTTGAGACATTTAAGACAGGTGCTCGGGACCACTAATTTCCGCCAGCTAGCATGGCATGTGCTCATGGGAAATCAGGTCATATTGAGAGGGGCTGACCCAGGGCTCATCCATTCAGCATTCACCATGCTGAAGGCCTTGCTCCCGGTGGGCTGTGTCCGCTCTGTGACGTACAGCGCCCAGTATGAGGAAGCATACCGATGTAACTTCCTGGGCCTCAGCCCTGACGTGCCCATCCCCACACACGTCAGCTCCTCAGAGTTCTCAGTGTTGGTGGATGTGGTCAGTCTGGAGAGGGGCTCTCTGTACTCTGCTGCTTGTGGTGAAGACATCCTCTCACTCTATCAGTTCAACATCAGCAGTACCAACTCACAGCCTACAGATAAAGgTCCCACGTTGTTGAATAAGATGGAGGTGGCGTTGTCCAATGAGAACCTGTCAGTGGACGTGGTCTCTCACTGTCTGCTGTGTCTGAAGGAGGAGTGGATGAATAAAGTGAAGGTGCTGTTTAAGTTCTCCAAGGTAGATGGGCGTGGGAGGGAGGACACCCAGAAGGTGTTGGCCCTGCTGGGTGCCACGGGGCCTGGGGAGGAGGACAACGTCAGGCTGCTCAAGTTCTGGATGACAGGACTCAGCAAAACCTACAAGAGCCATCTGATGACCGCtgtcagaggaggggagaggcccCTTAGCCAGTGAGAGAGCAGTGGAGGAGAATATGAGCGGTAGCGGGAGAGACCATACAGCTGGAGTGaaatatactgtatctcagtataggaggctggtgggaggaggtaTAGGAGGGTGGgcttattgtaatggctggaatggaataaatggaacggaatCAAACGtgatttccatatgtttgatgtgtttgacacTGTTCCATTTATACCTTTCCAGCCATGACAATGAGCCcgtcctatagctcctcccagcACCCTCTGTGcatctactactgtatttgaacagacagagagaaagggaaagaaaaCGAGTGTGAATGAGTGAGTAATGACAGATAGACTGAAGGATATGTTTGTGTCCAGGTGCTGACTTGATTAAAACCCATCCTTCACCATAAAGAACAAAAATCCACTCCATGGGTCGGTTTTAAATTAATAATTCATTCAGATACATTACGTAATAAGTAATTTGTATCTTTTTTTTAGTAATCAAATGGGAATTATTATAGGAACACTGTCCACAATTTTATGTCTAAATTATTATAAAAGTTTCAATAGTTTTGTTAACACATTGTACAGAgatattcaaataaaataactgCTTGAGCTGAAACTGAAA
>XM_036940644.1
CGCGTGACTCTCCTCGTCACATGACGACTACCACGAACCTAGAGAGCGAGCGTATCAGAGCAGTGAAAAAGTATAAACAAAAGCTAATACAGCAACAAGACTACTTTGGGAATTAACTAGAAATTAGAATTTGCGTGTGCATTGGCGATGTATTTCCCATGCTTGTAAGAAAAATGATCATGATCTATTTTCGAGACATTGGTTCGTGCTGTGCTAGGGGTTAGCTTGTCAGTAATGTCATTTTGTGATGCAATATGATCGTCTGTAATTTGTTGCAGTGATTGTTCACGCTGCTTTAATCAAGGTGTGTCCAGGTCGTGAGGGTCCTATCTTCTTTGGGGATGAGCAGCATGGTTTTGTGTTCTCTCACACGTTCTTCATCAAGGACAGCCTGGCCCGGGGCTTTCAGCGGTGGTACAGTATCGTCATGGTAGCCATGGACAGGATCTACCTCATCAACTCCTGGCCCTTCCTGCTGCGCCACCTCAGACTCACTATACAGAGTCTACAGAGCACAGCACTGaagGTGTTTGAcagtgagcagtgtgtgtgtcctcagagGGCGGTGAGGATGAACAGTGTGttctctcctgctgtcttccCCCACCAGAGGAGTGGTAACGCGGCCCGCTCCCTGCCCTCCCTCACCCAGCACACCAAACTCTGGGCCAGCCTACACTCCTCCTTCAGCTGGTTACTGAAGGCCTGTGGTAGTCGTCTGACAGAGAAGCTGCTGGAGGGAGCTCCCACAGAGGACACACTGGTTCTTGTAGAGAGACAGACCGAGCAAGAGGAGGAAATGAGTTGCTGGGAAGGAGCAGAAGGGGGCGGGTCTAGACCCCAGTACCACCAATCGGAAAGCGAGCTGTACAGAGACTTCTTGTTTGACGAGGGGAAAGCAGAGGGGTATCCTGGTCCAAAGTTCAGGTCCTTGAGACATTTAAGACAGGTGCTCGGGACCACTAATTTCCGCCAGCTAGCATGGCATGTGCTCATGGGAAATCAGGTCATATTGAGAGGGGCTGACCCAGGGCTCATCCATTCAGCATTCACCATGCTGAAGGCCTTGCTCCCGGTGGGCTGTGTCCGCTCTGTGACGTACAGCGCCCAGTATGAGGAAGCATACCGATGTAACTTCCTGGGCCTCAGCCCTGACGTGCCCATCCCCACACACGTCAGCTCCTCAGAGTTCTCAGTGTTGGTGGATGTGGTCAGTCTGGAGAGGGGCTCTCTGTACTCTGCTGCTTGTGGTGAAGACATCCTCTCACTCTATCAGTTCAACATCAGCAGTACCAACTCACAGCCTACAGATAAAGgTCCCACGTTGTTGAATAAGATGGAGGTGGCGTTGTCCAATGAGAACCTGTCAGTGGACGTGGTCTCTCACTGTCTGCTGTGTCTGAAGGAGGAGTGGATGAATAAAGTGAAGGTGCTGTTTAAGTTCTCCAAGGTAGATGGGCGTGGGAGGGAGGACACCCAGAAGGTGTTGGCCCTGCTGGGTGCCACGGGGCCTGGGGAGGAGGACAACGTCAGGCTGCTCAAGTTCTGGATGACAGGACTCAGCAAAACCTACAAGAGCCATCTGATGACCGCtgtcagaggaggggagaggcccCTTAGCCAGTGAGAGAGCAGTGGAGGAGAATATGAGCGGTAGCGGGAGAGACCATACAGCTGGAGTGaaatatactgtatctcagtataggaggctggtgggaggaggtaTAGGAGGGTGGgcttattgtaatggctggaatggaataaatggaacggaatCAAACGtgatttccatatgtttgatgtgtttgacacTGTTCCATTTATACCTTTCCAGCCATGACAATGAGCCcgtcctatagctcctcccagcACCCTCTGTGcatctactactgtatttgaacagacagagagaaagggaaagaaaaCGAGTGTGAATGAGTGAGTAATGACAGATAGACTGAAGGATATGTTTGTGTCCAGGTGCTGACTTGATTAAAACCCATCCTTCACCATAAAGAACAAAAATCCACTCCATGGGTCGGTTTTAAATTAATAATTCATTCAGATACATTACGTAATAAGTAATTTGTATCTTTTTTTTAGTAATCAAATGGGAATTATTATAGGAACACTGTCCACAATTTTATGTCTAAATTATTATAAAAGTTTCAATAGTTTTGTTAACACATTGTACAGAgatattcaaataaaataactgCTTGAGCTGAAACTGAAA
>TU137859
GACGACTACCACGAACCTAGAGAGCGAGCGTATCAGAGCAGTGAAAAAGTATAAACAAAAGCTAATACAGCAACAAGACTACTTTGGGAATTAACTAGAAATTAGAATTTGCGTGTGCATTGGCGATGTATTTCCCATGCTTGTAAGAAAAATGATCATGATCTATTTTCGAGACATTGGTTCGTGCTGTGCTAGGGGTTAGCTTGTCAGTAATGTCATTTTGTGATGCAATATGATCGTCTGTAATTTGTTGCAGTGATTGTTCACGCTGCTTTAATCAAGATGAATGCTCTGGTAGCTCTCTGTCATTTCTGTGAGCTCCATGGCCCCCGGACCCTGTTCTGCACCGAGGCTCTGCACCCCCCgtctatgtgtatgtgtgcgtgttgcCATTTTTCTTGCATTAAGACTCATAACTGTTTGTCAATATATAAGCCTTTAGTTAAGGGTGGCAGGTAACCTGGCGGTTAGAGCATTAGGCCAGTAACGACAAGGTTGCTGGGTCCAATAcccaagccgacaaggtgaaaaatctgtcaatgtgcccttgagcaaggcattaaACCCAAATTTTCACCAGGGGTGCTGTACTATGGCTGTACTATGGCTGTACTATGGTTGATCCTATAAAACAAGATATTTCACTGCAGCTATCTGGTGTATGGAACAATATATATCAGGGG
>TU137858
GACGACTACCACGAACCTAGAGAGCGAGCGTATCAGAGCAGTGAAAAAGTATAAACAAAAGCTAATACAGCAACAAGACTACTTTGGGAATTAACTAGAAATTAGAATTTGCGTGTGCATTGGCGATGTATTTCCCATGCTTGTAAGAAAAATGATCATGATCTATTTTCGAGACATTGGTTCGTGCTGTGCTAGGGGTTAGCTTGTCAGTAATGTCATTTTGTGATGCAATATGATCGTCTGTAATTTGTTGCAGTGATTGTTCACGCTGCTTTAATCAAGATGAATGCTCTGGTAGCTCTCTGTCATTTCTGTGAGCTCCATGGCCCCCGGACCCTGTTCTGCACCGAGGCTCTGCACCCCCCg

Function

NR:

description
folliculin isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940648.1 False 2176 mRNA 0.50 10 18695833 18708034
XM_036940644.1 False 2236 mRNA 0.49 10 18695833 18708631
TU137859 False 683 lncRNA 0.39 2 18706501 18708609
TU137858 True 366 lncRNA 0.42 2 18706818 18708609

Neighbor

gene id symbol gene type direction distance location
LOC110536908 LOC106605765 coding downstream 2013 18688948 ~ 18693820 (-)
grwd1 grwd1 coding downstream 23423 18662604 ~ 18672410 (-)
LOC110534340 LOC106605761 coding downstream 48949 18627912 ~ 18646884 (-)
LOC110536796 rps9 coding downstream 90192 18603045 ~ 18605641 (-)
LOC110536773 LOC106577219 coding downstream 105481 18587019 ~ 18590352 (-)
josd2 josd2 coding upstream 46660 18755291 ~ 18757796 (-)
LOC110508916 LOC106605783 coding upstream 353463 19062094 ~ 19077953 (-)
cacng6b LOC106606119 coding upstream 775697 19484328 ~ 19499142 (-)
u2af2a u2af2 coding upstream 798037 19506668 ~ 19513981 (-)
LOC110534365 LOC106576897 coding upstream 805648 19514279 ~ 19524832 (-)
G119499 NA non-coding downstream 10932 18684666 ~ 18684901 (-)
G119458 NA non-coding downstream 68133 18626958 ~ 18627700 (-)
G119448 NA non-coding downstream 93148 18602471 ~ 18602685 (-)
G119447 NA non-coding downstream 93484 18601933 ~ 18602349 (-)
G119532 ube2s non-coding upstream 56953 18765584 ~ 18767871 (-)
G119536 NA non-coding upstream 60147 18768778 ~ 18769085 (-)
G119522 NA non-coding upstream 89387 18798018 ~ 18798306 (-)
G119541 NA non-coding upstream 107409 18816040 ~ 18818685 (-)
G119553 NA non-coding upstream 111291 18819922 ~ 18820244 (-)
LOC110536756 ndufa3 other downstream 153336 18541050 ~ 18543176 (-)
G119087 LOC106605728 other downstream 219080 18476454 ~ 18476753 (-)
G119000 NA other downstream 262165 18427562 ~ 18433668 (-)
khdc4 LOC106573819 other downstream 423726 18268546 ~ 18277594 (-)
G119512 LOC105019016 other upstream 90869 18799500 ~ 18801387 (-)
G119663 NA other upstream 339676 19048307 ~ 19049030 (-)
LOC118944062 LOC106575151 other upstream 985058 19692971 ~ 19695564 (-)
LOC110537275 grl1 other upstream 1215467 19924063 ~ 19928533 (-)

Expression


Co-expression Network